FFCP PHASE1:Hg19::chr19:47523058..47523114,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4861 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7894 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc002pfw.2,uc002pfx.2_5end | |||
|description=CAGE_peak_1_at_NPAS1_5end | |||
|id=chr19:47523058..47523114,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.16e-25!180;CL:0000393!2.37e-12!60;CL:0000211!2.37e-12!60;CL:0000057!1.96e-11!75;CL:0000680!4.28e-10!57;CL:0000056!4.28e-10!57;CL:0000355!4.28e-10!57;CL:0000187!2.15e-09!54;CL:0000183!5.77e-09!59;CL:0002620!1.18e-07!23;CL:0002334!3.04e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;9.99e-10;12!CL:0002620;3.91e-07;23!CL:0000540;9.68e-07;6!CL:0000404;9.68e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.99e-12,76;CL:0002334,9.93e-10,12;CL:0000393,1.54e-09,61;CL:0000211,1.54e-09,61;CL:0002620,3.16e-07,23;CL:0000680,8.81e-07,58;CL:0000056,8.81e-07,58;CL:0000355,8.81e-07,58;CL:0000540,9.63e-07,6;CL:0000031,9.63e-07,6;CL:0000404,9.63e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;9.68e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.97e-14!365;UBERON:0000956!1.63e-11!25;UBERON:0000203!1.63e-11!25;UBERON:0001869!3.53e-11!32;UBERON:0002619!4.05e-11!22;UBERON:0002020!4.06e-11!34;UBERON:0003528!4.06e-11!34;UBERON:0005743!4.13e-11!86;UBERON:0001893!7.22e-11!34;UBERON:0002791!2.21e-10!33;UBERON:0001950!2.73e-10!20;UBERON:0001017!3.24e-10!82;UBERON:0000073!5.67e-10!94;UBERON:0001016!5.67e-10!94;UBERON:0003056!3.02e-09!61;UBERON:0004290!6.04e-09!70;UBERON:0001134!6.26e-09!61;UBERON:0002036!6.26e-09!61;UBERON:0003082!6.26e-09!61;UBERON:0002780!6.28e-09!41;UBERON:0001890!6.28e-09!41;UBERON:0006240!6.28e-09!41;UBERON:0003075!1.93e-08!86;UBERON:0007284!1.93e-08!86;UBERON:0003080!2.06e-08!42;UBERON:0000914!3.94e-08!83;UBERON:0002329!3.94e-08!83;UBERON:0003077!3.94e-08!83;UBERON:0003059!3.94e-08!83;UBERON:0007282!3.94e-08!83;UBERON:0009618!3.94e-08!83;UBERON:0007285!3.94e-08!83;UBERON:0002385!3.97e-08!63;UBERON:0001015!3.97e-08!63;UBERON:0000383!3.97e-08!63;UBERON:0000486!4.25e-08!82;UBERON:0002346!4.42e-08!90;UBERON:0000119!9.60e-08!312;UBERON:0000483!1.92e-07!309;UBERON:0000955!3.68e-07!69;UBERON:0006238!3.68e-07!69;UBERON:0000468!3.96e-07!659;UBERON:0001049!8.68e-07!57;UBERON:0005068!8.68e-07!57;UBERON:0006241!8.68e-07!57;UBERON:0007135!8.68e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;6.74e-15;22!UBERON:0000956;1.22e-14;25!UBERON:0000203;1.22e-14;25!UBERON:0001950;9.39e-14;20!UBERON:0001869;9.36e-12;32!UBERON:0003528;3.72e-11;34!UBERON:0002020;3.72e-11;34!UBERON:0002791;1.77e-10;32!UBERON:0001893;2.51e-10;34!UBERON:0004457;4.66e-09;9!UBERON:0000042;4.66e-09;9!UBERON:0003688;1.20e-07;6!UBERON:0002358;1.20e-07;6!UBERON:0003684;1.20e-07;6!UBERON:0001178;1.20e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,5.06e-15,22;UBERON:0000956,9.03e-15,25;UBERON:0000203,9.03e-15,25;UBERON:0001950,6.94e-14,20;UBERON:0001869,4.49e-13,32;UBERON:0003528,1.21e-12,34;UBERON:0002020,1.21e-12,34;UBERON:0001893,8.25e-12,34;UBERON:0002791,8.91e-12,32;UBERON:0001017,2.10e-09,81;UBERON:0004457,1.45e-08,12;UBERON:0000042,1.45e-08,12;UBERON:0001016,1.93e-08,89;UBERON:0002780,1.99e-08,41;UBERON:0001890,1.99e-08,41;UBERON:0003080,1.99e-08,41;UBERON:0006240,1.99e-08,41;UBERON:0003688,1.20e-07,6;UBERON:0002358,1.20e-07,6;UBERON:0003684,1.20e-07,6;UBERON:0001178,1.20e-07,6;UBERON:0003056,1.73e-07,61 | |||
|phase1_expression=34.7005704406763,20.3395497696434,29.177561647866,26.0190575718139,12.0679495495368,35.7658794881151,2.53299878168311,10.7392378482561,0.261185628199839,0.737201809504527,0,0,0.263766978228454,0,0,0,0.602694528023977,0,0,0,0.408001382488506,0,1.71741592278634,0.410623275218653,2.13422487311165,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,2.68280343881454,9.97327982379537,0.722878304769133,1.00267582127178,1.30361867064741,0,0,0.0945348171640679,0,0.175669571386252,1.57174890597255,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0,1.53316637465883,0,0,0,0,0,6.46063537203914,6.33152558322899,1.45650098894541,0.860509862246441,5.32002573297536,6.16745360156538,1.06748995729705,1.97334038733728,0.622422070799533,0.942974704487816,4.90385709340376,0,0,0,0.936480230490962,0.570471821544449,2.83952493048422,0.587172493218824,0.323745888736263,0.280901613404497,0,0,0,1.18800285728205,0.494533858557114,0.910161361938026,5.74894513452991,0,0.250237039743928,0,2.63386572528503,7.66219489497549,0.600952235626387,2.38207584636044,7.17558542755448,3.41691822109708,2.7551147150743,14.7044637081357,3.7098910525838,7.21393512127762,12.8420630868797,9.45147460551091,20.4617710838517,10.3497847440087,4.87864462804187,3.71785930683267,4.61512470271599,6.54888638479662,4.57813599238317,0,0,0,5.3668430697022,3.44577397635862,8.01738205799677,4.45742536566093,8.32658807889574,1.82488679537915,0,1.28648187638577,0,1.39310378409594,4.33127689001751,0.236613600079688,0,0,0.330881918197182,0,0,0.134831308160164,0,0.38474715694639,0,2.80483547606892,1.2347220339942,0,0,0,0,0,0.737930631258681,2.74508496477641,0,1.1240175325762,0,1.11106134190236,0.977424915930974,3.11980435583874,0,0,0.70445216541493,0.144366447761074,0,0,0,0,0,0.234004265139238,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0.925447434329912,0,0,0.560655421726804,1.30788020649984,0.5867062865676,0.904902010304444,32.1890801266694,4.22651376278,0.26593811658487,2.08014873822732,6.17297698229141,7.09245660116391,8.52550972851518,0.57191197463259,0,1.64648067356154,1.30294473717494,0.355391948742546,0.791951872933429,0.602878754119172,0.871533458600294,0.399891964728228,0,0,0,10.0642439306465,2.29723871668228,0,6.22559618670591,1.02738161275192,0.716243852959582,0,0,0,0,0.254094624222463,2.60279707715243,24.7452420088863,36.518545842888,19.1381625495949,0,0,0,0,1.00034104211935,0,1.45579603071565,2.85486382075459,0.946214490203608,3.16281820480326,3.61135319673263,2.27407504055985,1.03473071292505,5.31380478828349,3.87175253937577,0.173767228936166,0,0.686286847621712,0,0,0,0.909382714338778,4.99306318531491,1.20956117331872,21.089163664596,20.8708283671765,25.8207286878428,21.6555162242135,20.4682899626681,32.8141999132959,41.5570586045975,2.62156479464514,4.79416658345443,3.03870477251094,0,9.64546141217662,1.81289174387433,0.200506470303285,0.0920809889358963,1.60740227430449,0.910455840033585,0.917870904715969,0,0.15403067420883,0,0,0.105551628892876,0,0,0.215915916102139,6.16909010761157,1.35473218771926,1.00337954770971,0,0,0,0,0,1.28225062558195,4.26419039409617,3.57916234130733,0,0.915694648183434,0.247528499761764,0,0,6.42735719376638,0.48335359146061,6.77813915304435,4.91211759123615,0.689182862422653,1.82614416276065,2.75531718437034,2.81247870473133,1.24644849905432,0,0,0.127612712494584,0,25.1016596620534,9.4443704049192,3.485186350803,1.54016790088044,6.38767236380426,6.95946393660058,0.37064843820784,1.14499909393593,0,0,1.14378116354295,1.535386747868,0.42793898803392,9.86430068570404,2.35484592059769,0.179872457583315,0.823611089208164,1.06031162111118,5.66110948405285,7.92551605865041,0.842516912477962,0.975267478179181,1.46228093778771,0,0.818999468447914,0.989838023675989,11.3008116620243,20.4005177112066,3.98063385144732,7.89211593456773,2.89387767133344,0.655894752046633,1.62328301570163,0.30982349809975,2.53526042279017,0.430234056612155,0.88424136911809,0.35667105148125,0,1.47775344708365,2.30506425071931,1.89736586882858,0.699869440489966,0,0,0,0.0941438007767792,0,0,0.886860307073351,0.689170200620878,0,0,0,0,0,0,0,0,4.27296284509893,37.536714355271,6.61608583148786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,3.03401304373784,0,0,0,0,0,2.98244294329889,4.50142132513641,0,0,0,2.39097585901284,0.276283915531148,0,8.07922591767023,0.123084805461069,19.2844544350321,0,0,0,0,0,0,11.6319929531426,3.71072392647405,21.9575177801314,0,0,0,0.1137934482855,0.508507300585533,0,1.37897349296586,1.16641845353302,0,0,0.120596438625408,0,0,0,3.94893714877151,0,0,0,0,0,0,0.217294743844016,0,0.457987967009312,0,0,0.156980256395025,0,1.80476528493745,1.176375205906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| |||
|short_description=p1@NPAS1 | |||
}} |
Revision as of 00:07, 21 January 2014
Short description: | p1@NPAS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NPAS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc002pfw.2, uc002pfx.2_5end |
EntrezGene: | NPAS1 |
HGNC: | 7894 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.99e-12 | 76 |
preadipocyte | 9.93e-10 | 12 |
electrically responsive cell | 1.54e-09 | 61 |
electrically active cell | 1.54e-09 | 61 |
skin fibroblast | 3.16e-07 | 23 |
muscle precursor cell | 8.81e-07 | 58 |
myoblast | 8.81e-07 | 58 |
multi-potent skeletal muscle stem cell | 8.81e-07 | 58 |
neuron | 9.63e-07 | 6 |
neuroblast | 9.63e-07 | 6 |
electrically signaling cell | 9.63e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 5.06e-15 | 22 |
cerebral cortex | 9.03e-15 | 25 |
pallium | 9.03e-15 | 25 |
neocortex | 6.94e-14 | 20 |
cerebral hemisphere | 4.49e-13 | 32 |
brain grey matter | 1.21e-12 | 34 |
gray matter | 1.21e-12 | 34 |
telencephalon | 8.25e-12 | 34 |
regional part of telencephalon | 8.91e-12 | 32 |
central nervous system | 2.10e-09 | 81 |
cavity lining | 1.45e-08 | 12 |
serous membrane | 1.45e-08 | 12 |
nervous system | 1.93e-08 | 89 |
regional part of forebrain | 1.99e-08 | 41 |
forebrain | 1.99e-08 | 41 |
anterior neural tube | 1.99e-08 | 41 |
future forebrain | 1.99e-08 | 41 |
omentum | 1.20e-07 | 6 |
peritoneum | 1.20e-07 | 6 |
abdominal cavity | 1.20e-07 | 6 |
visceral peritoneum | 1.20e-07 | 6 |
pre-chordal neural plate | 1.73e-07 | 61 |