FFCP PHASE1:Hg19::chr4:71588392..71588404,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22902 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30285 | |||
|TSSclassifier=strong | |||
|UniProt=B4DG59 | |||
|association_with_transcript=18bp_to_AK294421_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_23_at_RUFY3_5end | |||
|id=chr4:71588392..71588404,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002553;5.05e-34;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,3.61e-34,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.84e-14;10!UBERON:0005564;2.84e-14;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!1.13e-34!69;UBERON:0006238!1.13e-34!69;UBERON:0001049!3.65e-34!57;UBERON:0005068!3.65e-34!57;UBERON:0006241!3.65e-34!57;UBERON:0007135!3.65e-34!57;UBERON:0001017!3.81e-33!82;UBERON:0002616!8.19e-33!59;UBERON:0005743!2.69e-31!86;UBERON:0002780!5.61e-31!41;UBERON:0001890!5.61e-31!41;UBERON:0006240!5.61e-31!41;UBERON:0003080!3.87e-30!42;UBERON:0000073!8.84e-30!94;UBERON:0001016!8.84e-30!94;UBERON:0002791!1.11e-27!33;UBERON:0001893!9.02e-27!34;UBERON:0003075!1.24e-24!86;UBERON:0007284!1.24e-24!86;UBERON:0002020!1.31e-23!34;UBERON:0003528!1.31e-23!34;UBERON:0002346!2.96e-23!90;UBERON:0001869!4.40e-22!32;UBERON:0003056!1.75e-21!61;UBERON:0007023!1.99e-20!115;UBERON:0000153!7.31e-20!129;UBERON:0007811!7.31e-20!129;UBERON:0000033!1.21e-19!123;UBERON:0002619!1.11e-17!22;UBERON:0001950!5.94e-16!20;UBERON:0000956!2.27e-15!25;UBERON:0000203!2.27e-15!25;UBERON:0004121!1.28e-14!169;UBERON:0002420!3.28e-14!9;UBERON:0007245!3.28e-14!9;UBERON:0010009!3.28e-14!9;UBERON:0010011!3.28e-14!9;UBERON:0000454!3.28e-14!9;UBERON:0000924!4.08e-14!173;UBERON:0006601!4.08e-14!173;UBERON:0009663!5.00e-13!7;UBERON:0001871!1.53e-11!7;UBERON:0002308!4.52e-10!9;UBERON:0000125!4.52e-10!9;UBERON:0000369!6.44e-09!4;UBERON:0002435!6.44e-09!4;UBERON:0000204!6.44e-09!4;UBERON:0010082!6.44e-09!4;UBERON:0000025!2.49e-08!194;UBERON:0004733!1.85e-07!12;UBERON:0002028!1.85e-07!12;UBERON:0007277!1.85e-07!12;UBERON:0000349!2.14e-07!5;UBERON:0002298!2.68e-07!8;UBERON:0004732!7.30e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;3.11e-27;5!UBERON:0001954;9.07e-18;2!UBERON:0003022;9.07e-18;2!UBERON:0002421;9.07e-18;2!UBERON:0002600;9.07e-18;2!UBERON:0000473;1.44e-17;8!UBERON:0002619;1.20e-13;22!UBERON:0003135;4.52e-13;11!UBERON:0000956;3.64e-12;25!UBERON:0000203;3.64e-12;25!UBERON:0002791;1.38e-09;32!UBERON:0001869;1.38e-09;32!UBERON:0000349;6.55e-08;5!UBERON:0002780;1.11e-07;41!UBERON:0001890;1.11e-07;41!UBERON:0003528;2.31e-07;34!UBERON:0002020;2.31e-07;34!UBERON:0000991;2.60e-07;21!UBERON:0001950;2.86e-07;20!UBERON:0003101;5.09e-07;22!UBERON:0000079;5.09e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,4.63e-27,5;UBERON:0001954,9.07e-18,2;UBERON:0003022,9.07e-18,2;UBERON:0002421,9.07e-18,2;UBERON:0002600,9.07e-18,2;UBERON:0000473,1.22e-17,8;UBERON:0002619,1.36e-13,22;UBERON:0003135,4.00e-13,11;UBERON:0000956,4.09e-12,25;UBERON:0000203,4.09e-12,25;UBERON:0002791,1.05e-09,32;UBERON:0001869,1.05e-09,32;UBERON:0003528,3.43e-09,34;UBERON:0002020,3.43e-09,34;UBERON:0001893,3.43e-09,34;UBERON:0000349,6.55e-08,5;UBERON:0002780,8.93e-08,41;UBERON:0001890,8.93e-08,41;UBERON:0003080,8.93e-08,41;UBERON:0006240,8.93e-08,41;UBERON:0000991,2.44e-07,21;UBERON:0009196,2.44e-07,21;UBERON:0009117,2.44e-07,21;UBERON:0005564,2.44e-07,21;UBERON:0001950,3.14e-07,20;UBERON:0004176,4.79e-07,22;UBERON:0003101,4.79e-07,22;UBERON:0000079,4.79e-07,22 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.221158519862449,0.295547618953547,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59045937961861,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.1251909307065,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,1.60114149657094,0,0,0.128458450192919,0,0,1.02558182120378,1.00828678488687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0.535701835878287,0,0,0.682986574053893,0,0,0,0.135939465953663,0,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0.198950775161368,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,5.22873017705852,1.60778478093707,0,0.20686599172379,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p23@RUFY3 | |||
}} |
Revision as of 01:24, 22 January 2014
Short description: | p23@RUFY3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_RUFY3_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 18bp_to_AK294421_5end |
EntrezGene: | RUFY3 |
HGNC: | 30285 |
UniProt: | B4DG59 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 3.61e-34 | 1 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 4.63e-27 | 5 |
Ammon's horn | 9.07e-18 | 2 |
lobe parts of cerebral cortex | 9.07e-18 | 2 |
hippocampal formation | 9.07e-18 | 2 |
limbic lobe | 9.07e-18 | 2 |
testis | 1.22e-17 | 8 |
regional part of cerebral cortex | 1.36e-13 | 22 |
male reproductive organ | 4.00e-13 | 11 |
cerebral cortex | 4.09e-12 | 25 |
pallium | 4.09e-12 | 25 |
regional part of telencephalon | 1.05e-09 | 32 |
cerebral hemisphere | 1.05e-09 | 32 |
brain grey matter | 3.43e-09 | 34 |
gray matter | 3.43e-09 | 34 |
telencephalon | 3.43e-09 | 34 |
limbic system | 6.55e-08 | 5 |
regional part of forebrain | 8.93e-08 | 41 |
forebrain | 8.93e-08 | 41 |
anterior neural tube | 8.93e-08 | 41 |
future forebrain | 8.93e-08 | 41 |
gonad | 2.44e-07 | 21 |
indifferent external genitalia | 2.44e-07 | 21 |
indifferent gonad | 2.44e-07 | 21 |
gonad primordium | 2.44e-07 | 21 |
neocortex | 3.14e-07 | 20 |
external genitalia | 4.79e-07 | 22 |
male organism | 4.79e-07 | 22 |
male reproductive system | 4.79e-07 | 22 |