FFCP PHASE1:Hg19::chr5:73109300..73109311,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64283 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt=B5MDA3 | |||
|association_with_transcript=-31bp_to_ENST00000296799,NM_001244364,uc011csr.1_5end | |||
|coexpression_cluster_id=C4518 | |||
|description=CAGE_peak_5_at_RGNEF_5end | |||
|id=chr5:73109300..73109311,+ | |||
|ontology_enrichment_celltype=CL:1000497!6.61e-16!18;CL:0002518!6.61e-16!18;CL:1000507!2.85e-14!12;CL:1000494!2.85e-14!12;CL:1000449!1.41e-12!16;CL:0000066!1.69e-08!254;CL:0000239!9.86e-08!3;CL:1000615!9.86e-08!3;CL:0002306!9.86e-08!3;CL:0002681!1.05e-07!13;CL:0002584!1.05e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.06e-39;10!CL:1000494;1.06e-39;10!CL:1000497;1.71e-31;17!CL:0002518;1.71e-31;17!CL:1000449;2.13e-26;15!CL:0000239;7.83e-16;3!CL:1000615;7.83e-16;3!CL:0002306;7.83e-16;3!CL:0000313;9.37e-13;1!CL:0002681;5.10e-09;12!CL:0002584;5.10e-09;12!CL:0000159;5.26e-07;2!CL:0002535;7.83e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,7.37e-40,10;CL:1000494,7.37e-40,10;CL:1000497,1.30e-31,17;CL:0002518,1.30e-31,17;CL:1000449,1.67e-26,15;CL:0000239,7.27e-16,3;CL:1000615,7.27e-16,3;CL:0002306,7.27e-16,3;CL:0000313,9.92e-13,1;CL:0002681,4.96e-09,12;CL:0002584,4.96e-09,12;CL:0000159,5.41e-07,2;CL:0002535,9.02e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0003918;1.13e-10;10!UBERON:0007687;1.13e-10;10 | |||
|ontology_enrichment_disease=DOID:120!2.68e-10!27;DOID:193!2.32e-09!29;DOID:299!9.19e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:4468;2.23e-23;2!DOID:2152;9.37e-13;1!DOID:120;2.78e-10;27!DOID:193;1.45e-09;29!DOID:299;2.10e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,2.23e-23,2;DOID:2152,9.92e-13,1;DOID:120,3.04e-10,27;DOID:193,1.57e-09,29;DOID:299,2.17e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0002113!1.46e-17!27;UBERON:0003918!1.46e-17!27;UBERON:0005095!1.46e-17!27;UBERON:0007687!1.46e-17!27;UBERON:0009773!2.85e-14!12;UBERON:0001231!2.85e-14!12;UBERON:0004810!2.85e-14!12;UBERON:0000489!4.47e-14!32;UBERON:0006555!6.67e-14!17;UBERON:0005103!6.67e-14!17;UBERON:0000083!6.67e-14!17;UBERON:0009201!6.67e-14!17;UBERON:0004819!6.67e-14!17;UBERON:0006553!6.67e-14!17;UBERON:0003074!6.67e-14!17;UBERON:0003060!6.67e-14!17;UBERON:0000058!2.75e-13!26;UBERON:0000080!5.74e-13!18;UBERON:0002120!5.74e-13!18;UBERON:0004875!5.74e-13!18;UBERON:0005721!5.74e-13!18;UBERON:0005754!5.74e-13!18;UBERON:0007297!5.74e-13!18;UBERON:0004211!1.41e-12!16;UBERON:0001285!1.41e-12!16;UBERON:0007684!1.41e-12!16;UBERON:0003220!1.41e-12!16;UBERON:0004208!1.41e-12!16;UBERON:0006554!1.54e-11!44;UBERON:0004876!2.21e-11!20;UBERON:0003100!2.41e-11!41;UBERON:0001008!3.59e-11!45;UBERON:0000992!7.58e-11!13;UBERON:0003887!1.05e-10!21;UBERON:0005172!1.22e-10!55;UBERON:0005173!1.22e-10!55;UBERON:0002417!4.17e-10!61;UBERON:0000916!4.17e-10!61;UBERON:0003134!5.14e-10!37;UBERON:0000474!5.14e-10!37;UBERON:0003886!4.11e-09!63;UBERON:0003133!6.07e-09!48;UBERON:0000466!1.33e-08!126;UBERON:0002553!1.52e-08!70;UBERON:0003103!5.15e-08!69;UBERON:0006853!9.86e-08!3;UBERON:0007685!9.86e-08!3;UBERON:0004134!9.86e-08!3;UBERON:0001225!1.05e-07!13;UBERON:0008987!1.05e-07!13;UBERON:0005156!2.81e-07!59;UBERON:0000990!2.81e-07!59;UBERON:0000464!4.04e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.06e-39;10!UBERON:0009773;1.06e-39;10!UBERON:0001231;1.06e-39;10!UBERON:0004810;1.06e-39;10!UBERON:0002113;1.85e-36;24!UBERON:0011143;1.85e-36;24!UBERON:0000489;5.23e-30;29!UBERON:0006554;5.65e-29;30!UBERON:0001008;5.65e-29;30!UBERON:0006555;2.13e-26;15!UBERON:0004819;2.13e-26;15!UBERON:0001285;2.13e-26;15!UBERON:0007684;2.13e-26;15!UBERON:0006853;7.83e-16;3!UBERON:0007685;7.83e-16;3!UBERON:0004134;7.83e-16;3!UBERON:0004911;9.37e-13;1!UBERON:0005172;5.09e-12;52!UBERON:0005173;5.09e-12;52!UBERON:0001225;5.10e-09;12!UBERON:0008987;5.10e-09;12!UBERON:0002417;8.53e-09;58!UBERON:0000916;8.53e-09;58!UBERON:0003103;6.58e-08;61!UBERON:0001851;2.59e-07;15!UBERON:0000353;2.59e-07;15!UBERON:0004909;5.26e-07;2!UBERON:0006955;7.83e-07;2!UBERON:0004801;7.83e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,7.37e-40,10;UBERON:0002113,1.09e-33,26;UBERON:0003918,1.09e-33,26;UBERON:0011143,1.09e-33,26;UBERON:0005095,1.09e-33,26;UBERON:0007687,1.09e-33,26;UBERON:0000489,4.25e-28,31;UBERON:0004211,1.67e-26,15;UBERON:0009773,1.67e-26,15;UBERON:0001231,1.67e-26,15;UBERON:0001285,1.67e-26,15;UBERON:0007684,1.67e-26,15;UBERON:0004208,1.67e-26,15;UBERON:0006555,7.84e-25,16;UBERON:0004819,7.84e-25,16;UBERON:0006554,3.52e-18,47;UBERON:0001008,8.86e-18,48;UBERON:0006853,7.27e-16,3;UBERON:0007685,7.27e-16,3;UBERON:0004134,7.27e-16,3;UBERON:0005172,1.10e-15,54;UBERON:0005173,1.10e-15,54;UBERON:0002417,5.27e-14,60;UBERON:0000916,5.27e-14,60;UBERON:0004911,9.92e-13,1;UBERON:0003103,3.17e-12,68;UBERON:0005177,1.02e-09,101;UBERON:0001225,4.96e-09,12;UBERON:0008987,4.96e-09,12;UBERON:0009569,1.25e-08,112;UBERON:0001851,2.54e-07,15;UBERON:0000353,2.54e-07,15;UBERON:0004909,5.41e-07,2;UBERON:0006955,9.02e-07,2;UBERON:0004801,9.02e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0.189069634328136,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0.268675568108545,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0.129271715757778,0,0,0.26593811658487,1.04007436911366,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0.117141414992713,0,0,0,0,0.368738337083406,0,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,7.47048769912823,1.56869953835371,2.92278449306521,10.9773694048591,0,0,0.863663664408557,0,0.812839312631559,0.501689773854853,3.05851527654046,0.831076008928724,2.68649705666614,0,0,0,0,0,0.103041011647722,0,0,0,0.650060246036521,0,0,0,0,0,0.107420244868274,0,0,0,0.165284915360978,0.576570202095319,0.893288987462089,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0.192444225451024,0,0,0.282431402330337,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01546198283421,0,0,0,0,0.716084698702437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,2.53197677433632,6.69254513452506,0.282706142867882,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0.394584402849391,1.20990716048664,0,0,0.60129367765797,0,0,0,0,0,2.27687636823834,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.329663433524666,0.337017719270924,0.393709926058995,0,0,0,0,0,0,0,0.77380195455795,0,0,4.4131196087551,2.62272940674991,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0,1.36869470307464,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0.155262956876259,0.414706207840855,0,0,0,0,0,0.363697318405119,0.214821114084977,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02496607435179,0,0,0,0,0,0,0,0.491545817507439,0.211312123358627,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0.225630985047772,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,3.45484145949794,0.47775168788705,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0.31020638566432,0,6.37575961247416,0,0.731507549893617,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0,0,0.217716747896961,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0.366724332548599,0,0,0,0 | |||
|short_description=p5@RGNEF | |||
}} |
Revision as of 05:56, 22 January 2014
Short description: | p5@RGNEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RGNEF_5end |
Coexpression cluster: | C4518_Renal_renal_serous_kidney_Sertoli_mesothelioma_mesenchymal |
Association with transcript: | -31bp_to_ENST00000296799, NM_001244364, uc011csr.1_5end |
EntrezGene: | RGNEF |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 7.37e-40 | 10 |
nephron tubule epithelial cell | 7.37e-40 | 10 |
kidney cell | 1.30e-31 | 17 |
kidney epithelial cell | 1.30e-31 | 17 |
epithelial cell of nephron | 1.67e-26 | 15 |
brush border epithelial cell | 7.27e-16 | 3 |
kidney cortex tubule cell | 7.27e-16 | 3 |
epithelial cell of proximal tubule | 7.27e-16 | 3 |
serous secreting cell | 9.92e-13 | 1 |
kidney cortical cell | 4.96e-09 | 12 |
renal cortical epithelial cell | 4.96e-09 | 12 |
seromucus secreting cell | 5.41e-07 | 2 |
epithelial cell of cervix | 9.02e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 7.37e-40 | 10 |
kidney | 1.09e-33 | 26 |
kidney mesenchyme | 1.09e-33 | 26 |
upper urinary tract | 1.09e-33 | 26 |
kidney rudiment | 1.09e-33 | 26 |
kidney field | 1.09e-33 | 26 |
cavitated compound organ | 4.25e-28 | 31 |
nephron epithelium | 1.67e-26 | 15 |
renal tubule | 1.67e-26 | 15 |
nephron tubule | 1.67e-26 | 15 |
nephron | 1.67e-26 | 15 |
uriniferous tubule | 1.67e-26 | 15 |
nephrogenic mesenchyme | 1.67e-26 | 15 |
excretory tube | 7.84e-25 | 16 |
kidney epithelium | 7.84e-25 | 16 |
urinary system structure | 3.52e-18 | 47 |
renal system | 8.86e-18 | 48 |
renal cortex tubule | 7.27e-16 | 3 |
region of nephron tubule | 7.27e-16 | 3 |
proximal tubule | 7.27e-16 | 3 |
abdomen element | 1.10e-15 | 54 |
abdominal segment element | 1.10e-15 | 54 |
abdominal segment of trunk | 5.27e-14 | 60 |
abdomen | 5.27e-14 | 60 |
epithelium of female gonad | 9.92e-13 | 1 |
compound organ | 3.17e-12 | 68 |
trunk region element | 1.02e-09 | 101 |
cortex of kidney | 4.96e-09 | 12 |
renal parenchyma | 4.96e-09 | 12 |
subdivision of trunk | 1.25e-08 | 112 |
cortex | 2.54e-07 | 15 |
parenchyma | 2.54e-07 | 15 |
epithelium of gonad | 5.41e-07 | 2 |
uterine epithelium | 9.02e-07 | 2 |
cervix epithelium | 9.02e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 2.23e-23 | 2 |
ovary epithelial cancer | 9.92e-13 | 1 |
female reproductive organ cancer | 3.04e-10 | 27 |
reproductive organ cancer | 1.57e-09 | 29 |
adenocarcinoma | 2.17e-07 | 25 |