FFCP PHASE1:Hg19::chr5:176836529..176836573,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2161 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3530 | |||
|TSSclassifier=strong | |||
|UniProt=P00748,Q8IZZ5 | |||
|association_with_transcript=3bp_to_ENST00000253496,NM_000505,uc003mgo.3,uc010jkl.2_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_F12_5end | |||
|id=chr5:176836529..176836573,- | |||
|ontology_enrichment_celltype=CL:0000181!2.52e-20!12;CL:0000417!2.52e-20!12;CL:0000668!2.52e-20!12;CL:0000414!2.52e-20!12;CL:0000412!2.52e-20!12;CL:0000182!2.52e-20!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.53e-39;12!CL:0002535;6.58e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.22e-39,12;CL:0000223,6.02e-08,58;CL:0002535,6.58e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.84e-30;11!UBERON:0009497;2.26e-25;13!UBERON:0001041;5.17e-11;30!UBERON:0003104;1.20e-10;31 | |||
|ontology_enrichment_disease=DOID:114!2.53e-14!2;DOID:178!5.40e-08!1;DOID:326!5.40e-08!1;DOID:3978!5.40e-08!1;DOID:3394!5.40e-08!1;DOID:5844!5.40e-08!1;DOID:1287!1.35e-07!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!1.09e-24!26;UBERON:0002107!2.53e-22!19;UBERON:0006925!2.53e-22!19;UBERON:0008836!2.53e-22!19;UBERON:0008835!4.01e-19!22;UBERON:0003894!4.01e-19!22;UBERON:0009854!3.05e-18!23;UBERON:0002368!7.66e-18!35;UBERON:0007499!1.09e-16!25;UBERON:0009497!1.09e-16!25;UBERON:0000015!1.09e-16!25;UBERON:0002423!1.09e-16!25;UBERON:0006235!1.09e-16!25;UBERON:0004161!1.09e-16!25;UBERON:0009856!5.28e-16!26;UBERON:0000949!1.71e-13!45;UBERON:0003929!2.87e-13!54;UBERON:0002365!3.11e-13!31;UBERON:0002330!3.11e-13!31;UBERON:0005172!9.34e-11!55;UBERON:0005173!9.34e-11!55;UBERON:0002530!6.97e-10!59;UBERON:0002417!1.57e-09!61;UBERON:0000916!1.57e-09!61;UBERON:0005911!4.58e-08!82;UBERON:0007190!9.94e-08!1;UBERON:0004921!1.77e-07!129;UBERON:0004185!1.77e-07!129;UBERON:0001007!8.63e-07!155;UBERON:0001555!8.63e-07!155;UBERON:0007026!8.63e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;6.06e-44;19!UBERON:0006925;6.06e-44;19!UBERON:0002423;2.89e-33;25!UBERON:0002365;1.04e-25;31!UBERON:0002330;1.04e-25;31!UBERON:0002368;1.12e-22;33!UBERON:0000949;1.35e-16;43!UBERON:0005172;3.64e-12;52!UBERON:0005173;3.64e-12;52!UBERON:0002417;2.42e-10;58!UBERON:0000916;2.42e-10;58!UBERON:0002530;1.15e-08;57!UBERON:0006955;6.58e-08;2!UBERON:0004801;6.58e-08;2!UBERON:0001007;1.65e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.42e-44,19;UBERON:0006925,5.42e-44,19;UBERON:0008836,5.42e-44,19;UBERON:0008835,6.39e-38,22;UBERON:0003894,6.39e-38,22;UBERON:0009854,3.01e-36,23;UBERON:0007499,2.65e-33,25;UBERON:0009497,2.65e-33,25;UBERON:0000015,2.65e-33,25;UBERON:0002423,2.65e-33,25;UBERON:0006235,2.65e-33,25;UBERON:0004161,2.65e-33,25;UBERON:0009856,5.33e-32,26;UBERON:0002365,9.67e-27,31;UBERON:0002330,9.67e-27,31;UBERON:0002368,1.30e-23,35;UBERON:0005172,5.63e-19,54;UBERON:0005173,5.63e-19,54;UBERON:0000949,3.23e-18,45;UBERON:0002417,5.46e-17,60;UBERON:0000916,5.46e-17,60;UBERON:0003929,4.62e-15,54;UBERON:0002530,1.01e-13,59;UBERON:0001041,2.00e-11,87;UBERON:0005177,1.05e-09,101;UBERON:0005911,1.17e-09,82;UBERON:0009569,1.19e-08,112;UBERON:0004921,4.39e-08,118;UBERON:0006955,6.58e-08,2;UBERON:0004801,6.58e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37528029272598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,770.670611716732,205.410888285624,352.110784382117,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,266.876220167601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,263.508498374205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.78672220923124,0,0,0,0,0,0,0,0,0,8.72399471485697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.0053795638408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0.858452096273142,0,0.0671834724867263,0,0,1.57566364614447,2.22522817629149,1.81989568406299,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,552.208816499015,300.790637830742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22469987149797,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0.202117188958219,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@F12 | |||
}} |
Revision as of 09:19, 22 January 2014
Short description: | p1@F12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_F12_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 3bp_to_ENST00000253496, NM_000505, uc003mgo.3, uc010jkl.2_5end |
EntrezGene: | F12 |
HGNC: | 3530 |
UniProt: | P00748Q8IZZ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.22e-39 | 12 |
endodermal cell | 6.02e-08 | 58 |
epithelial cell of cervix | 6.58e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
liver | 5.42e-44 | 19 |
digestive gland | 5.42e-44 | 19 |
liver bud | 5.42e-44 | 19 |
hepatic diverticulum | 6.39e-38 | 22 |
liver primordium | 6.39e-38 | 22 |
digestive tract diverticulum | 3.01e-36 | 23 |
epithelial sac | 2.65e-33 | 25 |
epithelium of foregut-midgut junction | 2.65e-33 | 25 |
anatomical boundary | 2.65e-33 | 25 |
hepatobiliary system | 2.65e-33 | 25 |
foregut-midgut junction | 2.65e-33 | 25 |
septum transversum | 2.65e-33 | 25 |
sac | 5.33e-32 | 26 |
exocrine gland | 9.67e-27 | 31 |
exocrine system | 9.67e-27 | 31 |
endocrine gland | 1.30e-23 | 35 |
abdomen element | 5.63e-19 | 54 |
abdominal segment element | 5.63e-19 | 54 |
endocrine system | 3.23e-18 | 45 |
abdominal segment of trunk | 5.46e-17 | 60 |
abdomen | 5.46e-17 | 60 |
gut epithelium | 4.62e-15 | 54 |
gland | 1.01e-13 | 59 |
foregut | 2.00e-11 | 87 |
trunk region element | 1.05e-09 | 101 |
endo-epithelium | 1.17e-09 | 82 |
subdivision of trunk | 1.19e-08 | 112 |
subdivision of digestive tract | 4.39e-08 | 118 |
uterine epithelium | 6.58e-08 | 2 |
cervix epithelium | 6.58e-08 | 2 |