FFCP PHASE1:Hg19::chr6:133008504..133008532,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8876 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12705 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc003qdn.2_5end | |||
|coexpression_cluster_id=C2842 | |||
|description=CAGE_peak_2_at_VNN1_5end | |||
|id=chr6:133008504..133008532,- | |||
|ontology_enrichment_celltype=CL:0000066!2.43e-09!254;CL:0000220!7.75e-08!246;CL:0002321!1.31e-07!248;CL:0000076!4.71e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002619;9.01e-10;3!CL:0002621;1.60e-09;3!CL:0002166;5.31e-09;3!CL:0000077;5.28e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.06e-10,253;CL:0002619,9.16e-10,3;CL:0002621,1.65e-09,3;CL:0002166,5.18e-09,3;CL:0000077,5.70e-08,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.05e-10!14;DOID:120!5.47e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.85e-21;14!DOID:120;2.01e-11;27!DOID:193;1.91e-10;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.64e-21,14;DOID:120,1.67e-11,27;DOID:193,1.61e-10,29 | |||
|ontology_enrichment_uberon=UBERON:0000992!3.06e-07!13;UBERON:0002100!3.08e-07!216;UBERON:0003104!5.81e-07!238;UBERON:0009142!5.81e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0000992;2.20e-11;13!UBERON:0001949;1.60e-09;3!UBERON:0002294;1.66e-09;7!UBERON:0001173;1.66e-09;7!UBERON:0002118;2.35e-08;5!UBERON:0001708;7.91e-07;4!UBERON:0008895;7.91e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000992,1.61e-11,13;UBERON:0001949,1.65e-09,3;UBERON:0002118,1.59e-08,5;UBERON:0004176,8.11e-08,22;UBERON:0002294,2.46e-07,9;UBERON:0001173,2.46e-07,9;UBERON:0004912,2.46e-07,9;UBERON:0001708,7.77e-07,4;UBERON:0008895,7.77e-07,4 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0.631719873426831,0,0.245733936501509,0,0,0,0,0,0,1.80808358407193,0.730310090387373,1.46379839637152,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.369754010166788,0,0,0,0,0,0,35.602560404148,27.5309616116133,40.4393641185673,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0.736555271975129,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0,0.208994966536811,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662045904066094,0,0.354668382198357,0.560677600142307,0,0,1.24484414159907,1.75123873690594,0.817309515567294,0,0,0.234321431833797,0,0,0.597794722207204,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0.567160915800105,0,0,0.211931901159562,0.300091096084402,0.103052529238439,0,0,0,0,0,0,0,0,0,0,13.3349988682675,23.7289124914026,16.6346665325622,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0.4115740113314,0,0,0,0.590789906681404,0,0.368965315629341,0,2.74375713521564,0,1.00528972411631,0.555530670951178,0,0,0,0,0,0.288732895522148,0,0.380508304469197,0,0,4.67812311566055,7.25413221931637,3.12125440806329,5.62403003920662,5.03946384596579,4.82035330624114,0,0.290633938513962,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.428933980974443,0,0,0,0,0,61.192193543096,20.9168030064071,15.795732606765,0,0,0,0,0,0,0.579125226670317,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0.521301686808497,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0.154209693802656,0,0.246381468041427,2.59627214591811,0,0,1.20303882181971,0,0,0,0,0,0.308061348417659,0,0,0.633309773357254,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0,0,0.618246069886334,0,0,1.14853107599234,0.650060246036521,0,0.096670718292122,0,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0,0.826424576804891,0.192190067365106,5.74257206225629,0,0,0.31481234683064,1.3940745403212,0.616067160352178,0,0,0.55597265731176,0,0,0,0.190630193923825,0,0,0,0,0.359744915166629,0,0,0.404364963146632,0,0.842516912477962,0,0.731140468893853,0,0,0,0,0,5.30751180192976,1.75380354101505,0.578775534266688,0,0.608731130888112,0,0,0,0,1.07001315444375,0.354761064070598,0,0,0,0,0.769776901804097,0.670302275535787,2.17781969722645,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0.121360521749513,0,0,0,0,0,0,0,4.11842208584752,0,0,0,0.276283915531148,0,0,0,0.311039587661807,2.78591888556713,0.358042349351218,0,0.887790650732402,0,0,0,0,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,3.30431961956303,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0.326465616318295,0,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0.992975867626496,0,0,0,0,0,1.46988596121566,0.174118413160805,0,0,0,0,0,0.969890164884194,0,0,0.137041924646751,0.397429223405979,0,0,12.2642994984847,8.5381197895741,1.9980960958213,0,0,0,47.9702477300538,6.95814199166422,0,0.271808412147228,0.627617077873999,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0.196854963029498,0,0,0.136203406111576,0,0,0,4.94942561413301,3.0952078182318,0,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,0,0,4.32110745600634,0.326587360109409,3.59190574687462,0,0.511164065356265,0,0.146552233678082,0,0,0,0,0.704815022316672,0.106787412567695,0,0.828478110694391,0,0,0,19.1502377331055,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0.554805861502613,0,0,0,0,0.151230923763239,0,0,1.27437413730962,35.9842489730884,3.72631096503023,0,5.0509925766019,2.60872530905867,26.4453391835104,4.56966254602554,2.44122439922797,1.63663793282303,13.641140744396,0.464033759878494,1.99047944349308,0,0,0,0,0.963099152036517,15.4397945789947,0,0,0.694567422971502,0,0.71635536432595,0,2.41212454536578,3.18040462702586,2.12205442098006,0.337884881306145,0,0,2.12701969324168,0,0,0,0,0.327609848846413,0.245772908753719,1.47918486351039,0,0,0,0,1.10463570151104,1.39879507719444,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366857197043358,0.346576998451015,0,1.3807198521202,0,0.300841313397029,0,0.781514011233092,0,0.163771917510097,2.36569737947272,0,0,0,0.0634158101939068,0,0,0,0,0.255524855279191,0,0,0,0,0.177404740325278,0,13.5475527455561,0,0,0,0.778619813244484,0.078493092850514,0,0,0,4.31855182437243,1.43325506366115,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0.0852134047591577,0,2.2910686854405,0,0,0,0,0.121917924982269,0,0.205325613712494,0,0,0,0,0,0,0,0.150962843566674,0.385870790539723,0,0,0,0,0,0.297046400327086,0,0,0.0939839179798536,0,0,1.78553938605658,1.05868461514708,0,0,0,0,0,0,0,0,0.371995018166751,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| |||
|short_description=p2@VNN1 | |||
}} |
Revision as of 13:56, 22 January 2014
Short description: | p2@VNN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VNN1_5end |
Coexpression cluster: | C2842_tubular_Mesothelial_CD14_giant_mesenchymal_mesothelioma_Gingival |
Association with transcript: | 0bp_to_uc003qdn.2_5end |
EntrezGene: | VNN1 |
HGNC: | 12705 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.06e-10 | 253 |
adult endothelial progenitor cell | 9.16e-10 | 3 |
gingival epithelial cell | 1.65e-09 | 3 |
epithelial cell of Malassez | 5.18e-09 | 3 |
mesothelial cell | 5.70e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
female gonad | 1.61e-11 | 13 |
gingival epithelium | 1.65e-09 | 3 |
right ovary | 1.59e-08 | 5 |
external genitalia | 8.11e-08 | 22 |
biliary system | 2.46e-07 | 9 |
biliary tree | 2.46e-07 | 9 |
biliary bud | 2.46e-07 | 9 |
jaw skeleton | 7.77e-07 | 4 |
splanchnocranium | 7.77e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.64e-21 | 14 |
female reproductive organ cancer | 1.67e-11 | 27 |
reproductive organ cancer | 1.61e-10 | 29 |