FFCP PHASE1:Hg19::chr7:33945169..33945180,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=168667 | |EntrezGene=entrezgene:168667 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=24154 | |HGNC=HGNC:24154 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=F8WDG9 | |UniProt=uniprot:F8WDG9 | ||
|association_with_transcript=18bp_to_ENST00000444773_5end | |association_with_transcript=18bp_to_ENST00000444773_5end | ||
|cluster_id=chr7:33945169..33945180,+ | |||
|coexpression_cluster_id=C4684 | |coexpression_cluster_id=C4684 | ||
|description=CAGE_peak_4_at_BMPER_5end | |description=CAGE_peak_4_at_BMPER_5end | ||
Revision as of 09:34, 31 July 2015
| Short description: | p4@BMPER |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_BMPER_5end |
| Coexpression cluster: | C4684_Smooth_lung_Fibroblast_mesenchymal_Chondrocyte_basal_mesodermal |
| Association with transcript: | 18bp_to_ENST00000444773_5end |
| EntrezGene: | 168667 |
| HGNC: | 24154 |
| UniProt: | F8WDG9 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@BMPER |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| vascular associated smooth muscle cell | 1.46e-17 | 32 |
| smooth muscle cell | 1.47e-13 | 43 |
| smooth muscle myoblast | 1.47e-13 | 43 |
| smooth muscle cell of the subclavian artery | 3.64e-13 | 5 |
| skin fibroblast | 2.10e-11 | 23 |
| muscle precursor cell | 4.25e-10 | 58 |
| myoblast | 4.25e-10 | 58 |
| multi-potent skeletal muscle stem cell | 4.25e-10 | 58 |
| muscle cell | 1.18e-09 | 55 |
| fibroblast | 1.21e-09 | 76 |
Showing 1 to 10 of 12 entries
| Ontology term | p-value | n |
|---|---|---|
| systemic artery | 2.94e-19 | 33 |
| systemic arterial system | 2.94e-19 | 33 |
| artery | 3.85e-16 | 42 |
| arterial blood vessel | 3.85e-16 | 42 |
| arterial system | 3.85e-16 | 42 |
| thoracic segment blood vessel | 3.64e-13 | 5 |
| subclavian artery | 3.64e-13 | 5 |
| epithelial tube open at both ends | 1.92e-11 | 59 |
| blood vessel | 1.92e-11 | 59 |
| blood vasculature | 1.92e-11 | 59 |
Showing 1 to 10 of 38 entries
| Ontology term | p-value | n |
|---|---|---|
| musculoskeletal system disease | 7.84e-09 | 5 |
| myotonic disease | 7.84e-09 | 5 |
| muscle tissue disease | 7.84e-09 | 5 |
| myopathy | 7.84e-09 | 5 |
| muscular disease | 7.84e-09 | 5 |
| myotonic dystrophy | 7.84e-09 | 5 |
Showing 1 to 6 of 6 entries
