FFCP PHASE1:Hg19::chr8:57354262..57354270,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:57354262..57354270,+ | |||
|coexpression_cluster_id=C309 | |coexpression_cluster_id=C309 | ||
|description=CAGE_peak_at_chr8:57354262..57354270,+ | |description=CAGE_peak_at_chr8:57354262..57354270,+ | ||
Latest revision as of 19:02, 31 July 2015
| Short description: | p@chr8:57354262..57354270, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr8:57354262..57354270, + |
| Coexpression cluster: | C309_normal_Chondrocyte_small_Fibroblast_tenocyte_neuroepithelioma_Osteoblast |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p@chr8:57354262..57354270+ |
|---|
0
2
4
6
8
10
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| chondroblast | 1.82e-58 | 6 |
| chondrocyte | 1.82e-58 | 6 |
| GAG secreting cell | 3.25e-39 | 9 |
| carbohydrate secreting cell | 3.25e-39 | 9 |
| extracellular matrix secreting cell | 8.97e-24 | 15 |
| stromal cell | 5.80e-13 | 28 |
| secretory cell | 3.59e-10 | 36 |
Showing 1 to 7 of 7 entries
| Ontology term | p-value | n |
|---|---|---|
| primary palate mesenchyme | 1.07e-23 | 1 |
| pneumatized bone | 1.07e-23 | 1 |
| subdivision of skeleton | 1.07e-23 | 1 |
| intramembranous bone | 1.07e-23 | 1 |
| head bone | 1.07e-23 | 1 |
| dermal bone | 1.07e-23 | 1 |
| irregular bone | 1.07e-23 | 1 |
| mesenchyme derived from head neural crest | 1.07e-23 | 1 |
| facial mesenchyme | 1.07e-23 | 1 |
| head or neck bone | 1.07e-23 | 1 |
Showing 1 to 10 of 48 entries
| Ontology term | p-value | n |
|---|---|---|
| teratoma | 1.85e-12 | 2 |
| peripheral nerve sheath neoplasm | 2.90e-12 | 2 |
| neurofibroma | 2.90e-12 | 2 |
| peripheral nervous system neoplasm | 1.30e-08 | 3 |
Showing 1 to 4 of 4 entries
