FFCP PHASE1:Mm9::chr2:125549260..125549273,-: Difference between revisions
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{{FFCP|EntrezGene=271849|HGNC=|MCL_coexpression_id=107|UniProt=Q6S5L9|association_with_transcript=-137bp_to_ENSMUST00000042246_5end|description=CAGE_peak_4_at_Shc4_5end|id=chr2:125549260..125549273,-|ontology_enrichment_celltype=CL:0000107!2.44e-10!9|ontology_enrichment_celltype_v019_2=CL:0000107,4.74e-43,9;CL:0000221,3.46e-19,44;CL:0000133,3.46e-19,44;CL:0000540,4.44e-19,33;CL:0000047,4.44e-19,33;CL:0000031,4.44e-19,33;CL:0000404,4.44e-19,33;CL:0002319,8.20e-17,43;CL:0000393,7.34e-16,39;CL:0000211,7.34e-16,39;CL:0002321,3.03e-11,70;CL:0002611,7.94e-10,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.86e-12!102;UBERON:0000924!2.86e-12!102;UBERON:0006601!2.86e-12!102;UBERON:0000010!5.08e-12!11;UBERON:0002410!2.44e-10!9;UBERON:0000073!5.23e-10!75;UBERON:0001016!5.23e-10!75;UBERON:0001017!7.02e-09!73;UBERON:0005743!7.02e-09!73|ontology_enrichment_uberon_v019_2=UBERON:0000010,4.57e-43,11;UBERON:0002410,4.74e-43,9;UBERON:0000011,9.88e-16,3;UBERON:0010313,1.92e-15,3;UBERON:0002342,1.92e-15,3;UBERON:0002005,1.92e-15,3;UBERON:0005428,1.92e-15,3;UBERON:0005062,1.92e-15,3;UBERON:0000013,5.14e-15,3;UBERON:0001016,2.98e-10,75;UBERON:0002256,7.94e-10,2;UBERON:0001017,5.55e-09,73;UBERON:0004121,5.87e-09,95;UBERON:0000924,5.87e-09,95;UBERON:0006601,5.87e-09,95;UBERON:0001948,1.64e-08,5;UBERON:0002315,1.64e-08,5;UBERON:0002240,3.57e-07,6;UBERON:0005174,3.57e-07,6;UBERON:0001137,3.57e-07,6|phase1_expression=0.960893082628764,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367093504323363,0,0,0,0,0,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0.599200221036809,0.768436610643109,0,0,0,1.42825492201902,1.76694832761291,0,0.0958454710182364,0,0,0.255374676170375,0.46081959976873,0,0,0,0.558365998002762,0,0.30559649555362,0,1.13897344639282,0,0.605809546665472,2.64500460373749,0,0,0,0,0,0,0.280888840263504,0,0,0,4.22530259330042,0,0,0,0,0,0,0.11418387971906,0,0,0,0.608930956624282,0,0.150722640552623,0.23517741427141,0.125666591329675,0,0,0,0,0,0,1.86391761218122,0.585561594023094,0.41889341362691,0,0,0,0,0,0.915001205637253,0.125654352112864,0.521472960576829,0.511430914660661,0,0.973447578406546,0,0.124406970610093,2.0217820674694,0.210441855886474,0,0,0,0,0.136072998302656,0,0.187403449119458,0.258703370739016,0,0,0,0,0.278047249225598,0,0.205782136407943,0,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,0.210289948564127,0.720332286654991,0,0,0.213288250535234,0.232236671860439,0.38660238396628,0.403367049246685,0,0,0,0.164698954724011,0,0.198956472041151,0.38992817423824,0,0.216138049874694,0,0.189667900953082,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585400943573396,0,0.221464689648775,0,0.163863314715738,0,0,0,0,0,0,0.80275294993896,0.234423373184406,0,0,5.36363973007636,3.51394869866975,10.5557464889071,6.69112634267146,8.02075226696619,7.35998980050964,4.85772842009873,2.33804686329049,5.13874111330481,0.321321316421807,0,0.178065603667255,0,0,0,0,0.302323556964751,0.188605079755898,0,0,0,0,0.356497378384721,0,0,0,0,0.18006109403131,0.129358683782755,0,0.354680467284547,0,0,0,0,0,0,0.32977250588296,0.322928853391811,0.180938774784468,0.238744688006273,0.492422699235184,0,0.927126510052548,0.170870880797853,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.216010681643603,0.418176592028937,0,0,0.165306911450672,0,0.129614973291793,0,0,0,0,0,0,0.168956125490778,0,0.13020438484395,0.524296722128554,1.93267296660805,1.72818003754719,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0.100966449948148,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,1.12950368523413,0.460325236507177,0,0.171853182343688,0.685082519770642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192075457214608,0.114870937911227,0,0.231768651889711,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0,0,0.145346416632329,0.188218760830661,0.0846146078916765,0,0,0,0,0,0.29551344712669,0.409231043169689,0.309873682371932,0.192906610981141,0,0.233931608445408,0.429742108096597,0,0.441182838239031,0.463735671240843|short_description=p4@Shc4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:271849 | |||
|HGNC= | |||
|MCL_coexpression_id=107 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6S5L9 | |||
|association_with_transcript=-137bp_to_ENSMUST00000042246_5end | |||
|cluster_id=chr2:125549260..125549273,- | |||
|description=CAGE_peak_4_at_Shc4_5end | |||
|id=chr2:125549260..125549273,- | |||
|ontology_enrichment_celltype=CL:0000107!2.44e-10!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000107,4.74e-43,9;CL:0000221,3.46e-19,44;CL:0000133,3.46e-19,44;CL:0000540,4.44e-19,33;CL:0000047,4.44e-19,33;CL:0000031,4.44e-19,33;CL:0000404,4.44e-19,33;CL:0002319,8.20e-17,43;CL:0000393,7.34e-16,39;CL:0000211,7.34e-16,39;CL:0002321,3.03e-11,70;CL:0002611,7.94e-10,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.86e-12!102;UBERON:0000924!2.86e-12!102;UBERON:0006601!2.86e-12!102;UBERON:0000010!5.08e-12!11;UBERON:0002410!2.44e-10!9;UBERON:0000073!5.23e-10!75;UBERON:0001016!5.23e-10!75;UBERON:0001017!7.02e-09!73;UBERON:0005743!7.02e-09!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,4.57e-43,11;UBERON:0002410,4.74e-43,9;UBERON:0000011,9.88e-16,3;UBERON:0010313,1.92e-15,3;UBERON:0002342,1.92e-15,3;UBERON:0002005,1.92e-15,3;UBERON:0005428,1.92e-15,3;UBERON:0005062,1.92e-15,3;UBERON:0000013,5.14e-15,3;UBERON:0001016,2.98e-10,75;UBERON:0002256,7.94e-10,2;UBERON:0001017,5.55e-09,73;UBERON:0004121,5.87e-09,95;UBERON:0000924,5.87e-09,95;UBERON:0006601,5.87e-09,95;UBERON:0001948,1.64e-08,5;UBERON:0002315,1.64e-08,5;UBERON:0002240,3.57e-07,6;UBERON:0005174,3.57e-07,6;UBERON:0001137,3.57e-07,6 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367093504323363,0,0,0,0,0,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0.599200221036809,0.768436610643109,0,0,0,1.42825492201902,1.76694832761291,0,0.0958454710182364,0,0,0.255374676170375,0.46081959976873,0,0,0,0.558365998002762,0,0.30559649555362,0,1.13897344639282,0,0.605809546665472,2.64500460373749,0,0,0,0,0,0,0.280888840263504,0,0,0,4.22530259330042,0,0,0,0,0,0,0.11418387971906,0,0,0,0.608930956624282,0,0.150722640552623,0.23517741427141,0.125666591329675,0,0,0,0,0,0,1.86391761218122,0.585561594023094,0.41889341362691,0,0,0,0,0,0.915001205637253,0.125654352112864,0.521472960576829,0.511430914660661,0,0.973447578406546,0,0.124406970610093,2.0217820674694,0.210441855886474,0,0,0,0,0.136072998302656,0,0.187403449119458,0.258703370739016,0,0,0,0,0.278047249225598,0,0.205782136407943,0,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,0.210289948564127,0.720332286654991,0,0,0.213288250535234,0.232236671860439,0.38660238396628,0.403367049246685,0,0,0,0.164698954724011,0,0.198956472041151,0.38992817423824,0,0.216138049874694,0,0.189667900953082,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585400943573396,0,0.221464689648775,0,0.163863314715738,0,0,0,0,0,0,0.80275294993896,0.234423373184406,0,0,5.36363973007636,3.51394869866975,10.5557464889071,6.69112634267146,8.02075226696619,7.35998980050964,4.85772842009873,2.33804686329049,5.13874111330481,0.321321316421807,0,0.178065603667255,0,0,0,0,0.302323556964751,0.188605079755898,0,0,0,0,0.356497378384721,0,0,0,0,0.18006109403131,0.129358683782755,0,0.354680467284547,0,0,0,0,0,0,0.32977250588296,0.322928853391811,0.180938774784468,0.238744688006273,0.492422699235184,0,0.927126510052548,0.170870880797853,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.216010681643603,0.418176592028937,0,0,0.165306911450672,0,0.129614973291793,0,0,0,0,0,0,0.168956125490778,0,0.13020438484395,0.524296722128554,1.93267296660805,1.72818003754719,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0.100966449948148,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,1.12950368523413,0.460325236507177,0,0.171853182343688,0.685082519770642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192075457214608,0.114870937911227,0,0.231768651889711,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0,0,0.145346416632329,0.188218760830661,0.0846146078916765,0,0,0,0,0,0.29551344712669,0.409231043169689,0.309873682371932,0.192906610981141,0,0.233931608445408,0.429742108096597,0,0.441182838239031,0.463735671240843 | |||
|short_description=p4@Shc4 | |||
}} |
Revision as of 22:51, 3 August 2015
Short description: | p4@Shc4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Shc4_5end |
Coexpression cluster: | MCL_coexpression_mm9:107 |
Association with transcript: | -137bp_to_ENSMUST00000042246_5end |
EntrezGene: | 271849 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
autonomic neuron | 4.74e-43 | 9 |
ectodermal cell | 3.46e-19 | 44 |
neurectodermal cell | 3.46e-19 | 44 |
neuron | 4.44e-19 | 33 |
neuronal stem cell | 4.44e-19 | 33 |
neuroblast | 4.44e-19 | 33 |
electrically signaling cell | 4.44e-19 | 33 |
neural cell | 8.20e-17 | 43 |
electrically responsive cell | 7.34e-16 | 39 |
electrically active cell | 7.34e-16 | 39 |
embryonic cell | 3.03e-11 | 70 |
neuron of the dorsal spinal cord | 7.94e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 4.57e-43 | 11 |
autonomic nervous system | 4.74e-43 | 9 |
parasympathetic nervous system | 9.88e-16 | 3 |
neural crest-derived structure | 1.92e-15 | 3 |
neural crest | 1.92e-15 | 3 |
enteric nervous system | 1.92e-15 | 3 |
vagal neural crest | 1.92e-15 | 3 |
neural fold | 1.92e-15 | 3 |
sympathetic nervous system | 5.14e-15 | 3 |
nervous system | 2.98e-10 | 75 |
dorsal horn of spinal cord | 7.94e-10 | 2 |
central nervous system | 5.55e-09 | 73 |
ectoderm-derived structure | 5.87e-09 | 95 |
ectoderm | 5.87e-09 | 95 |
presumptive ectoderm | 5.87e-09 | 95 |
regional part of spinal cord | 1.64e-08 | 5 |
gray matter of spinal cord | 1.64e-08 | 5 |
spinal cord | 3.57e-07 | 6 |
dorsal region element | 3.57e-07 | 6 |
dorsum | 3.57e-07 | 6 |