FFCP PHASE1:Mm9::chr7:148106817..148106828,+: Difference between revisions
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{{FFCP|EntrezGene=101613|HGNC=|MCL_coexpression_id=12|UniProt=E9QNS0,Q91WS2|association_with_transcript=16bp_to_ENSMUST00000106045,NM_001081389,uc009kiu.1,uc009kiv.2_5end|description=CAGE_peak_3_at_Nlrp6_5end|id=chr7:148106817..148106828,+|ontology_enrichment_celltype=CL:0002563!5.85e-12!9;CL:0002251!5.85e-12!9;CL:0000239!1.02e-08!6;CL:0000677!1.02e-08!6;CL:0000212!1.02e-08!6;CL:0000584!1.02e-08!6;CL:0000075!2.69e-07!7|ontology_enrichment_celltype_v019_2=CL:0002563,9.08e-21,9;CL:0002251,9.08e-21,9;CL:0000239,8.79e-15,6;CL:0000677,8.79e-15,6;CL:0000584,8.79e-15,6;CL:0000075,1.43e-12,7;CL:0002076,8.53e-12,15;CL:0000066,1.01e-11,25;CL:0000223,1.94e-08,20;CL:0000682,6.06e-08,3;CL:0002250,1.45e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!4.05e-25!43;UBERON:0005409!4.16e-23!59;UBERON:0000344!2.83e-19!15;UBERON:0001242!4.62e-17!13;UBERON:0000060!4.62e-17!13;UBERON:0001262!4.62e-17!13;UBERON:0004786!4.62e-17!13;UBERON:0003350!5.85e-12!9;UBERON:0004808!5.85e-12!9;UBERON:0001277!5.85e-12!9;UBERON:0004923!3.05e-10!24;UBERON:0000485!2.44e-09!11;UBERON:0001007!4.41e-08!128;UBERON:0001555!4.41e-08!128;UBERON:0007026!4.41e-08!128;UBERON:0004119!8.82e-08!130;UBERON:0000925!8.82e-08!130;UBERON:0006595!8.82e-08!130;UBERON:0004921!4.72e-07!126;UBERON:0004185!4.72e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.34e-63,31;UBERON:0005409,1.44e-42,47;UBERON:0000344,2.44e-34,15;UBERON:0001242,3.14e-30,13;UBERON:0001262,3.14e-30,13;UBERON:0004786,3.14e-30,13;UBERON:0003350,9.08e-21,9;UBERON:0004808,9.08e-21,9;UBERON:0001277,9.08e-21,9;UBERON:0004923,3.73e-20,24;UBERON:0000485,1.09e-16,11;UBERON:0001007,8.57e-16,116;UBERON:0001555,8.57e-16,116;UBERON:0007026,8.57e-16,116;UBERON:0004119,2.07e-15,118;UBERON:0000925,2.07e-15,118;UBERON:0006595,2.07e-15,118;UBERON:0004921,1.05e-13,114;UBERON:0002108,1.18e-10,4;UBERON:0000331,2.08e-08,3;UBERON:0002116,2.08e-08,3;UBERON:0001204,2.08e-08,3;UBERON:0001168,2.08e-08,3|phase1_expression=0,7.32848356042658,5.91499011206397,18.4503168897166,26.5474736871564,2.51818907867835,2.80335168714631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.63978026100879,5.50582274561208,6.89078356938024,7.75371593086335,3.66301095566011,12.5415456841207,12.3494763582366,1.77384408524244,0,0,0,5.48818077527422,4.65457007003779,5.10423390655923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,1.94112595522402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.59175283654366,0,0,7.40825460104915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2342386214491,9.52022039988759,0,0,1.54640953586512,5.24377164020691,5.55945109612176,7.03834816616469,9.01605216934572,7.08205505313247,5.52937459360593,4.17808591286417,4.874102177978,8.98819408654222,9.51007419448655,9.95706366271836,0,0,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,3.87642439752332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.28702091574627,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.648032044930808,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,10.3691978633434,0,0,0,0,0,0,0,0,0,0,0,0,0,0.810900861160657,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0.666740183404846,0.412070114477788,0.64183841918363,0,0.50695859978048,0.565879024158229,0.0936415074698824,0.192075457214608,0.287177344778066,0.476293691283074,0.463537303779422,0.192909220463705,0.412085900803307,0.294397840268795,0.342869252385415,0,0.238436189947321,0.290692833264657,0.188218760830661,0.0846146078916765,0.365855945745545,0.263069711437843,0.271608227691724,0.561142271657738,0.355905054372522,0.394017929502254,0,0.309873682371932,0.385813221962283,0,0.467863216890817,0,0,0,0|short_description=p3@Nlrp6}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:101613 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9QNS0,uniprot:Q91WS2 | |||
|association_with_transcript=16bp_to_ENSMUST00000106045,NM_001081389,uc009kiu.1,uc009kiv.2_5end | |||
|cluster_id=chr7:148106817..148106828,+ | |||
|description=CAGE_peak_3_at_Nlrp6_5end | |||
|id=chr7:148106817..148106828,+ | |||
|ontology_enrichment_celltype=CL:0002563!5.85e-12!9;CL:0002251!5.85e-12!9;CL:0000239!1.02e-08!6;CL:0000677!1.02e-08!6;CL:0000212!1.02e-08!6;CL:0000584!1.02e-08!6;CL:0000075!2.69e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,9.08e-21,9;CL:0002251,9.08e-21,9;CL:0000239,8.79e-15,6;CL:0000677,8.79e-15,6;CL:0000584,8.79e-15,6;CL:0000075,1.43e-12,7;CL:0002076,8.53e-12,15;CL:0000066,1.01e-11,25;CL:0000223,1.94e-08,20;CL:0000682,6.06e-08,3;CL:0002250,1.45e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.05e-25!43;UBERON:0005409!4.16e-23!59;UBERON:0000344!2.83e-19!15;UBERON:0001242!4.62e-17!13;UBERON:0000060!4.62e-17!13;UBERON:0001262!4.62e-17!13;UBERON:0004786!4.62e-17!13;UBERON:0003350!5.85e-12!9;UBERON:0004808!5.85e-12!9;UBERON:0001277!5.85e-12!9;UBERON:0004923!3.05e-10!24;UBERON:0000485!2.44e-09!11;UBERON:0001007!4.41e-08!128;UBERON:0001555!4.41e-08!128;UBERON:0007026!4.41e-08!128;UBERON:0004119!8.82e-08!130;UBERON:0000925!8.82e-08!130;UBERON:0006595!8.82e-08!130;UBERON:0004921!4.72e-07!126;UBERON:0004185!4.72e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.34e-63,31;UBERON:0005409,1.44e-42,47;UBERON:0000344,2.44e-34,15;UBERON:0001242,3.14e-30,13;UBERON:0001262,3.14e-30,13;UBERON:0004786,3.14e-30,13;UBERON:0003350,9.08e-21,9;UBERON:0004808,9.08e-21,9;UBERON:0001277,9.08e-21,9;UBERON:0004923,3.73e-20,24;UBERON:0000485,1.09e-16,11;UBERON:0001007,8.57e-16,116;UBERON:0001555,8.57e-16,116;UBERON:0007026,8.57e-16,116;UBERON:0004119,2.07e-15,118;UBERON:0000925,2.07e-15,118;UBERON:0006595,2.07e-15,118;UBERON:0004921,1.05e-13,114;UBERON:0002108,1.18e-10,4;UBERON:0000331,2.08e-08,3;UBERON:0002116,2.08e-08,3;UBERON:0001204,2.08e-08,3;UBERON:0001168,2.08e-08,3 | |||
|phase1_expression=0,7.32848356042658,5.91499011206397,18.4503168897166,26.5474736871564,2.51818907867835,2.80335168714631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.63978026100879,5.50582274561208,6.89078356938024,7.75371593086335,3.66301095566011,12.5415456841207,12.3494763582366,1.77384408524244,0,0,0,5.48818077527422,4.65457007003779,5.10423390655923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,1.94112595522402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.59175283654366,0,0,7.40825460104915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2342386214491,9.52022039988759,0,0,1.54640953586512,5.24377164020691,5.55945109612176,7.03834816616469,9.01605216934572,7.08205505313247,5.52937459360593,4.17808591286417,4.874102177978,8.98819408654222,9.51007419448655,9.95706366271836,0,0,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,3.87642439752332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.28702091574627,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.648032044930808,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,10.3691978633434,0,0,0,0,0,0,0,0,0,0,0,0,0,0.810900861160657,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0.666740183404846,0.412070114477788,0.64183841918363,0,0.50695859978048,0.565879024158229,0.0936415074698824,0.192075457214608,0.287177344778066,0.476293691283074,0.463537303779422,0.192909220463705,0.412085900803307,0.294397840268795,0.342869252385415,0,0.238436189947321,0.290692833264657,0.188218760830661,0.0846146078916765,0.365855945745545,0.263069711437843,0.271608227691724,0.561142271657738,0.355905054372522,0.394017929502254,0,0.309873682371932,0.385813221962283,0,0.467863216890817,0,0,0,0 | |||
|short_description=p3@Nlrp6 | |||
}} |
Revision as of 11:55, 4 August 2015
Short description: | p3@Nlrp6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nlrp6_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 16bp_to_ENSMUST00000106045, NM_001081389, uc009kiu.1, uc009kiv.2_5end |
EntrezGene: | 101613 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 9.08e-21 | 9 |
epithelial cell of alimentary canal | 9.08e-21 | 9 |
brush border epithelial cell | 8.79e-15 | 6 |
gut absorptive cell | 8.79e-15 | 6 |
enterocyte | 8.79e-15 | 6 |
columnar/cuboidal epithelial cell | 1.43e-12 | 7 |
endo-epithelial cell | 8.53e-12 | 15 |
epithelial cell | 1.01e-11 | 25 |
endodermal cell | 1.94e-08 | 20 |
M cell of gut | 6.06e-08 | 3 |
intestinal crypt stem cell | 1.45e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 8.34e-63 | 31 |
gastrointestinal system | 1.44e-42 | 47 |
mucosa | 2.44e-34 | 15 |
intestinal mucosa | 3.14e-30 | 13 |
wall of intestine | 3.14e-30 | 13 |
gastrointestinal system mucosa | 3.14e-30 | 13 |
epithelium of mucosa | 9.08e-21 | 9 |
gastrointestinal system epithelium | 9.08e-21 | 9 |
intestinal epithelium | 9.08e-21 | 9 |
organ component layer | 3.73e-20 | 24 |
simple columnar epithelium | 1.09e-16 | 11 |
digestive system | 8.57e-16 | 116 |
digestive tract | 8.57e-16 | 116 |
primitive gut | 8.57e-16 | 116 |
endoderm-derived structure | 2.07e-15 | 118 |
endoderm | 2.07e-15 | 118 |
presumptive endoderm | 2.07e-15 | 118 |
subdivision of digestive tract | 1.05e-13 | 114 |
small intestine | 1.18e-10 | 4 |
ileal mucosa | 2.08e-08 | 3 |
ileum | 2.08e-08 | 3 |
mucosa of small intestine | 2.08e-08 | 3 |
wall of small intestine | 2.08e-08 | 3 |