FFCP PHASE1:Mm9::chr2:74529917..74529926,+: Difference between revisions
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{{FFCP|EntrezGene=15430|HGNC=|MCL_coexpression_id=1446|UniProt=A2ASM8,P28359|association_with_transcript=-78bp_to_NM_013554,uc008kdx.2_5end|description=CAGE_peak_5_at_Hoxd10_5end|id=chr2:74529917..74529926,+|ontology_enrichment_celltype=CL:0002612!2.76e-07!3|ontology_enrichment_celltype_v019_2=CL:0002612,3.73e-38,3;CL:0002611,7.61e-26,2;CL:0000117,5.91e-14,23;CL:0000337,5.91e-14,23;CL:0000540,8.00e-10,33;CL:0000047,8.00e-10,33;CL:0000031,8.00e-10,33;CL:0000404,8.00e-10,33;CL:0000393,2.37e-08,39;CL:0000211,2.37e-08,39;CL:0002319,1.35e-07,43;CL:0000221,1.99e-07,44;CL:0000133,1.99e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000489!4.74e-17!21;UBERON:0005156!1.59e-14!26;UBERON:0000990!1.59e-14!26;UBERON:0003133!8.20e-14!24;UBERON:0000991!7.10e-12!18;UBERON:0005564!7.10e-12!18;UBERON:0001948!4.77e-11!5;UBERON:0002315!4.77e-11!5;UBERON:0002113!8.90e-11!14;UBERON:0003918!8.90e-11!14;UBERON:0005095!8.90e-11!14;UBERON:0007687!8.90e-11!14;UBERON:0004176!1.55e-10!17;UBERON:0009196!1.55e-10!17;UBERON:0009117!1.55e-10!17;UBERON:0006554!3.66e-09!16;UBERON:0002240!4.29e-09!6;UBERON:0005174!4.29e-09!6;UBERON:0001137!4.29e-09!6;UBERON:0000473!5.86e-09!14;UBERON:0001008!1.68e-08!17;UBERON:0003135!3.07e-08!15;UBERON:0003101!1.30e-07!16;UBERON:0000079!1.30e-07!16;UBERON:0002257!2.76e-07!3;UBERON:0000474!4.29e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.13e-62,5;UBERON:0002315,2.13e-62,5;UBERON:0002240,4.11e-52,6;UBERON:0005174,4.11e-52,6;UBERON:0001137,4.11e-52,6;UBERON:0002257,3.73e-38,3;UBERON:0003076,2.38e-26,12;UBERON:0003057,2.38e-26,12;UBERON:0002256,7.61e-26,2;UBERON:0000489,1.07e-21,21;UBERON:0003103,9.82e-11,43;UBERON:0002020,1.53e-09,34|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28520787523043,1.54607978666129,0,0,0,0,0,0,0,0,0,0,0,0,1.76777151284201,3.55929201997757,1.67759501242771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305518091550949,0.124406970610093,0,0,0,0,0,0,0,0,0,0,1.07783996466421,0.567318240503458,0.175951124163949,0.219195732427575,0,0,0,0.398068533636986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426576501070468,0,0.257734922644187,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0.189667900953082,0.342745537829186,2.25415471346161,0,0.387904974335251,0.350679099451593,0.505892296994058,0,0.156998727841375,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.325773918707152,0.824850614862677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.938686832254841,0.42366414172764,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.259229946583586,0,0,0.747582730219894,0.66183396182839,0.972255941720238,0.645799117388655,0,0.821500670520278,0.13020438484395,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73260649706906,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0,0,0,0.209613162627982,0,0,0,0,0,0.25347929989024,0.188626341386076,0,0.0640251524048693,0.0574354689556133,0,0.231768651889711,0,0,0,0,0,0,0,0,0.338458431566706,0,0,0.271608227691724,0,0,0.29551344712669,0.409231043169689,0,0,0,0,0,0.191288332068843,0,0|short_description=p5@Hoxd10}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:15430 | |||
|HGNC= | |||
|MCL_coexpression_id=1446 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A2ASM8,uniprot:P28359 | |||
|association_with_transcript=-78bp_to_NM_013554,uc008kdx.2_5end | |||
|cluster_id=chr2:74529917..74529926,+ | |||
|description=CAGE_peak_5_at_Hoxd10_5end | |||
|id=chr2:74529917..74529926,+ | |||
|ontology_enrichment_celltype=CL:0002612!2.76e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002612,3.73e-38,3;CL:0002611,7.61e-26,2;CL:0000117,5.91e-14,23;CL:0000337,5.91e-14,23;CL:0000540,8.00e-10,33;CL:0000047,8.00e-10,33;CL:0000031,8.00e-10,33;CL:0000404,8.00e-10,33;CL:0000393,2.37e-08,39;CL:0000211,2.37e-08,39;CL:0002319,1.35e-07,43;CL:0000221,1.99e-07,44;CL:0000133,1.99e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!4.74e-17!21;UBERON:0005156!1.59e-14!26;UBERON:0000990!1.59e-14!26;UBERON:0003133!8.20e-14!24;UBERON:0000991!7.10e-12!18;UBERON:0005564!7.10e-12!18;UBERON:0001948!4.77e-11!5;UBERON:0002315!4.77e-11!5;UBERON:0002113!8.90e-11!14;UBERON:0003918!8.90e-11!14;UBERON:0005095!8.90e-11!14;UBERON:0007687!8.90e-11!14;UBERON:0004176!1.55e-10!17;UBERON:0009196!1.55e-10!17;UBERON:0009117!1.55e-10!17;UBERON:0006554!3.66e-09!16;UBERON:0002240!4.29e-09!6;UBERON:0005174!4.29e-09!6;UBERON:0001137!4.29e-09!6;UBERON:0000473!5.86e-09!14;UBERON:0001008!1.68e-08!17;UBERON:0003135!3.07e-08!15;UBERON:0003101!1.30e-07!16;UBERON:0000079!1.30e-07!16;UBERON:0002257!2.76e-07!3;UBERON:0000474!4.29e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.13e-62,5;UBERON:0002315,2.13e-62,5;UBERON:0002240,4.11e-52,6;UBERON:0005174,4.11e-52,6;UBERON:0001137,4.11e-52,6;UBERON:0002257,3.73e-38,3;UBERON:0003076,2.38e-26,12;UBERON:0003057,2.38e-26,12;UBERON:0002256,7.61e-26,2;UBERON:0000489,1.07e-21,21;UBERON:0003103,9.82e-11,43;UBERON:0002020,1.53e-09,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28520787523043,1.54607978666129,0,0,0,0,0,0,0,0,0,0,0,0,1.76777151284201,3.55929201997757,1.67759501242771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305518091550949,0.124406970610093,0,0,0,0,0,0,0,0,0,0,1.07783996466421,0.567318240503458,0.175951124163949,0.219195732427575,0,0,0,0.398068533636986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426576501070468,0,0.257734922644187,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0.189667900953082,0.342745537829186,2.25415471346161,0,0.387904974335251,0.350679099451593,0.505892296994058,0,0.156998727841375,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.325773918707152,0.824850614862677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.938686832254841,0.42366414172764,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.259229946583586,0,0,0.747582730219894,0.66183396182839,0.972255941720238,0.645799117388655,0,0.821500670520278,0.13020438484395,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73260649706906,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0,0,0,0.209613162627982,0,0,0,0,0,0.25347929989024,0.188626341386076,0,0.0640251524048693,0.0574354689556133,0,0.231768651889711,0,0,0,0,0,0,0,0,0.338458431566706,0,0,0.271608227691724,0,0,0.29551344712669,0.409231043169689,0,0,0,0,0,0.191288332068843,0,0 | |||
|short_description=p5@Hoxd10 | |||
}} |
Revision as of 11:17, 5 August 2015
Short description: | p5@Hoxd10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Hoxd10_5end |
Coexpression cluster: | MCL_coexpression_mm9:1446 |
Association with transcript: | -78bp_to_NM_013554, uc008kdx.2_5end |
EntrezGene: | 15430 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 3.73e-38 | 3 |
neuron of the dorsal spinal cord | 7.61e-26 | 2 |
CNS neuron (sensu Vertebrata) | 5.91e-14 | 23 |
neuroblast (sensu Vertebrata) | 5.91e-14 | 23 |
neuron | 8.00e-10 | 33 |
neuronal stem cell | 8.00e-10 | 33 |
neuroblast | 8.00e-10 | 33 |
electrically signaling cell | 8.00e-10 | 33 |
electrically responsive cell | 2.37e-08 | 39 |
electrically active cell | 2.37e-08 | 39 |
neural cell | 1.35e-07 | 43 |
ectodermal cell | 1.99e-07 | 44 |
neurectodermal cell | 1.99e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 2.13e-62 | 5 |
gray matter of spinal cord | 2.13e-62 | 5 |
spinal cord | 4.11e-52 | 6 |
dorsal region element | 4.11e-52 | 6 |
dorsum | 4.11e-52 | 6 |
ventral horn of spinal cord | 3.73e-38 | 3 |
posterior neural tube | 2.38e-26 | 12 |
chordal neural plate | 2.38e-26 | 12 |
dorsal horn of spinal cord | 7.61e-26 | 2 |
cavitated compound organ | 1.07e-21 | 21 |
compound organ | 9.82e-11 | 43 |
gray matter | 1.53e-09 | 34 |