FFCP PHASE2:Hg19::chr13:28543409..28543420,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:1045 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding |HGNC=HGNC:1806 |TSSclassifier=strong ...") |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1045 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | ||
|HGNC= | |HGNC=1806 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q99626 | ||
|association_with_transcript=-92bp_to_NM_001265,uc001urv.2_5end | |association_with_transcript=-92bp_to_NM_001265,uc001urv.2_5end | ||
|cluster_id=chr13:28543409..28543420,- | |cluster_id=chr13:28543409..28543420,- |
Latest revision as of 23:39, 16 September 2015
Short description: | p8@CDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | -92bp_to_NM_001265, uc001urv.2_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | Q99626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p8@CDX2 |
---|
0
5
10
15
20
25
30
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.74e-31 | 4 |
epithelial cell of large intestine | 9.31e-28 | 2 |
epithelial cell of cervix | 8.60e-08 | 2 |
Showing 1 to 3 of 3 entries
Ontology term | p-value | n |
---|---|---|
intestine | 2.33e-72 | 17 |
large intestine | 2.84e-58 | 11 |
colon | 1.60e-52 | 9 |
gastrointestinal system | 7.64e-50 | 25 |
lower digestive tract | 1.32e-42 | 5 |
intestinal mucosa | 7.74e-31 | 4 |
wall of intestine | 7.74e-31 | 4 |
gastrointestinal system mucosa | 7.74e-31 | 4 |
gastrointestinal system epithelium | 7.74e-31 | 4 |
intestinal epithelium | 7.74e-31 | 4 |
Showing 1 to 10 of 28 entries
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 3.25e-09 | 14 |
Showing 1 to 1 of 1 entries