FFCP PHASE1:Hg19::chr2:16081912..16081931,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=4613 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC= | |HGNC=7559 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 19:23, 17 September 2015
| Short description: | p2@MYCN |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_MYCN_5end |
| Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
| Association with transcript: | -114bp_to_uc010yjr.1_5end |
| EntrezGene: | MYCN |
| HGNC: | 7559 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@MYCN |
|---|
0
50
100
150
200
250
300
350
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| germ line cell | 6.82e-22 | 7 |
| germ cell | 6.82e-22 | 7 |
| neuronal stem cell | 2.57e-17 | 8 |
| embryonic stem cell | 2.76e-16 | 5 |
| neuron | 8.79e-13 | 6 |
| neuroblast | 8.79e-13 | 6 |
| electrically signaling cell | 8.79e-13 | 6 |
| neurectodermal cell | 7.41e-08 | 59 |
| neural cell | 2.28e-07 | 25 |
| intestinal epithelial cell | 5.09e-07 | 4 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| intestinal mucosa | 5.09e-07 | 4 |
| wall of intestine | 5.09e-07 | 4 |
| gastrointestinal system mucosa | 5.09e-07 | 4 |
| gastrointestinal system epithelium | 5.09e-07 | 4 |
| intestinal epithelium | 5.09e-07 | 4 |
| testis | 9.01e-07 | 8 |
Showing 1 to 6 of 6 entries
| Ontology term | p-value | n |
|---|---|---|
| germ cell and embryonal cancer | 7.69e-22 | 22 |
| germ cell cancer | 7.69e-22 | 22 |
| neuroendocrine tumor | 7.96e-09 | 6 |
Showing 1 to 3 of 3 entries
