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MCL coexpression mm9:86

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:115889275..115889292,-p9@Gm12657
p9@Gm6421
p9@Gm6749
p9@Gm7194
p9@Gm7227
p9@H3f3a
p9@H3f3b
p9@H3f3c
Mm9::chr11:4733080..4733087,-p13@Nf2
Mm9::chr11:59337226..59337229,-p@chr11:59337226..59337229
-
Mm9::chr11:68310150..68310165,+p@chr11:68310150..68310165
+
Mm9::chr11:69479320..69479327,-p@chr11:69479320..69479327
-
Mm9::chr11:82776772..82776796,+p@chr11:82776772..82776796
+
Mm9::chr11:83342723..83342749,-p@chr11:83342723..83342749
-
Mm9::chr11:83343982..83344002,-p2@Ccl5
Mm9::chr11:83344007..83344035,-p1@Ccl5
Mm9::chr11:83344152..83344166,-p5@Ccl5
Mm9::chr11:8475592..8475595,-p@chr11:8475592..8475595
-
Mm9::chr12:104680569..104680588,-p@chr12:104680569..104680588
-
Mm9::chr12:106633788..106633790,+p@chr12:106633788..106633790
+
Mm9::chr12:21379342..21379353,-p4@Adam17
Mm9::chr12:21379387..21379407,-p1@Adam17
Mm9::chr12:3347796..3347799,-p@chr12:3347796..3347799
-
Mm9::chr12:3873135..3873145,+p@chr12:3873135..3873145
+
Mm9::chr12:74454130..74454136,+p@chr12:74454130..74454136
+
Mm9::chr13:103496369..103496373,+p@chr13:103496369..103496373
+
Mm9::chr13:103496926..103496929,+p@chr13:103496926..103496929
+
Mm9::chr13:103496979..103496992,+p@chr13:103496979..103496992
+
Mm9::chr13:103497005..103497018,+p@chr13:103497005..103497018
+
Mm9::chr13:103497023..103497030,+p@chr13:103497023..103497030
+
Mm9::chr13:20988377..20988387,+p@chr13:20988377..20988387
+
Mm9::chr13:56274518..56274522,-p@chr13:56274518..56274522
-
Mm9::chr13:76099911..76099914,+p@chr13:76099911..76099914
+
Mm9::chr13:93962194..93962218,-p3@Papd4
Mm9::chr14:103412087..103412104,+p@chr14:103412087..103412104
+
Mm9::chr14:103412110..103412119,+p@chr14:103412110..103412119
+
Mm9::chr14:103446224..103446237,+p1@Irg1
Mm9::chr14:59984271..59984298,-p1@D14Ertd668e
Mm9::chr15:6519558..6519565,+p@chr15:6519558..6519565
+
Mm9::chr15:74789551..74789596,+p@chr15:74789551..74789596
+
Mm9::chr15:74789635..74789644,+p@chr15:74789635..74789644
+
Mm9::chr15:78391431..78391478,-p@chr15:78391431..78391478
-
Mm9::chr15:78391654..78391663,-p@chr15:78391654..78391663
-
Mm9::chr15:78446356..78446382,+p@chr15:78446356..78446382
+
Mm9::chr16:37884149..37884164,+p@chr16:37884149..37884164
+
Mm9::chr16:44106307..44106309,-p@chr16:44106307..44106309
-
Mm9::chr16:77302229..77302237,+p@chr16:77302229..77302237
+
Mm9::chr16:93833516..93833522,+p@chr16:93833516..93833522
+
Mm9::chr16:97684510..97684515,-p1@Mx1
Mm9::chr17:25270386..25270405,+p2@Clcn7
Mm9::chr17:25273605..25273609,+p6@Clcn7
Mm9::chr17:31251474..31251478,+p@chr17:31251474..31251478
+
Mm9::chr17:35185378..35185397,-p@chr17:35185378..35185397
-
Mm9::chr17:47532314..47532327,-p@chr17:47532314..47532327
-
Mm9::chr17:47532347..47532365,-p@chr17:47532347..47532365
-
Mm9::chr17:57497995..57498014,+p2@Emr1
Mm9::chr17:57498105..57498146,+p1@Emr1
Mm9::chr17:57501115..57501124,+p@chr17:57501115..57501124
+
Mm9::chr19:10059393..10059419,+p@chr19:10059393..10059419
+
Mm9::chr19:11679204..11679214,-p4@Ms4a6d
Mm9::chr19:11679223..11679238,-p3@Ms4a6d
Mm9::chr19:11679239..11679256,-p2@Ms4a6d
Mm9::chr19:11679258..11679283,-p1@Ms4a6d
Mm9::chr19:11679298..11679307,-p5@Ms4a6d
Mm9::chr19:11679318..11679323,-p6@Ms4a6d
Mm9::chr19:3376383..3376420,+p@chr19:3376383..3376420
+
Mm9::chr19:34644769..34644786,+p@chr19:34644769..34644786
+
Mm9::chr19:34658018..34658023,+p1@Ifit3
Mm9::chr19:61300490..61300509,-p@chr19:61300490..61300509
-
Mm9::chr19:61300512..61300533,-p@chr19:61300512..61300533
-
Mm9::chr1:173159807..173159816,-p@chr1:173159807..173159816
-
Mm9::chr1:173159841..173159858,-p@chr1:173159841..173159858
-
Mm9::chr1:173159948..173159963,-p@chr1:173159948..173159963
-
Mm9::chr1:173159965..173159982,-p@chr1:173159965..173159982
-
Mm9::chr1:174405502..174405515,+p2@Slamf9
Mm9::chr1:174405518..174405543,+p1@Slamf9
Mm9::chr1:175697076..175697110,-p2@Ifi204
Mm9::chr1:175843035..175843063,-p1@Mnda
Mm9::chr1:175843064..175843069,-p5@Mnda
Mm9::chr1:175843121..175843130,-p4@Mnda
Mm9::chr1:74441254..74441265,-p@chr1:74441254..74441265
-
Mm9::chr2:126905973..126905984,+p5@Blvra
Mm9::chr2:126905988..126905998,+p7@Blvra
Mm9::chr2:130912020..130912045,-p1@Siglec1
Mm9::chr2:144163172..144163181,+p@chr2:144163172..144163181
+
Mm9::chr2:160190321..160190364,-p@chr2:160190321..160190364
-
Mm9::chr2:166885917..166885930,-p9@Znfx1
Mm9::chr2:166885947..166885956,-p13@Znfx1
Mm9::chr2:166888107..166888224,-p1@Znfx1
Mm9::chr2:26207754..26207757,-p3@Dnlz
Mm9::chr2:91042949..91042955,+p2@Acp2
Mm9::chr2:91046614..91046632,+p@chr2:91046614..91046632
+
Mm9::chr2:91046666..91046683,+p@chr2:91046666..91046683
+
Mm9::chr3:129672975..129673048,-p1@Ccdc109b
Mm9::chr3:142283611..142283629,+p2@Gbp2
Mm9::chr3:142283650..142283668,+p3@Gbp2
Mm9::chr3:142283686..142283697,+p5@Gbp2
Mm9::chr3:142283703..142283714,+p4@Gbp2
Mm9::chr3:151394747..151394780,-p@chr3:151394747..151394780
-
Mm9::chr3:151412841..151412883,-p1@Ifi44
Mm9::chr3:79283596..79283600,-p@chr3:79283596..79283600
-
Mm9::chr3:88425125..88425136,+p5@Arhgef2
Mm9::chr3:95358394..95358404,+p@chr3:95358394..95358404
+
Mm9::chr3:96097876..96097908,-p1@Fcgr1
Mm9::chr3:96097919..96097924,-p2@Fcgr1
Mm9::chr4:124385594..124385598,+p@chr4:124385594..124385598
+
Mm9::chr4:132409323..132409326,-p@chr4:132409323..132409326
-
Mm9::chr4:136685291..136685295,+p@chr4:136685291..136685295
+
Mm9::chr4:19969161..19969179,+p3@Ggh
Mm9::chr4:40186779..40186799,-p2@Ddx58
Mm9::chr4:43467454..43467459,-p4@Cd72
p4@LOC100504743
Mm9::chr5:115347779..115347835,+p2@Oasl2
Mm9::chr5:121337607..121337621,-p1@Oas1g
Mm9::chr5:121357519..121357542,-p1@Oas1a
Mm9::chr5:143666316..143666327,-p@chr5:143666316..143666327
-
Mm9::chr5:145888788..145888807,+p@chr5:145888788..145888807
+
Mm9::chr5:145888852..145888868,+p@chr5:145888852..145888868
+
Mm9::chr5:145888886..145888903,+p@chr5:145888886..145888903
+
Mm9::chr6:116583427..116583433,-p@chr6:116583427..116583433
-
Mm9::chr6:122527924..122527962,-p@chr6:122527924..122527962
-
Mm9::chr6:122528009..122528020,-p@chr6:122528009..122528020
-
Mm9::chr6:122528069..122528079,-p@chr6:122528069..122528079
-
Mm9::chr6:122798286..122798297,-p@chr6:122798286..122798297
-
Mm9::chr6:122805870..122805874,-p@chr6:122805870..122805874
-
Mm9::chr6:122871823..122871883,+p1@Clec4a1
Mm9::chr6:122902702..122902715,+p2@Clec4a3
Mm9::chr6:122902719..122902781,+p1@Clec4a3
Mm9::chr6:123073532..123073546,+p5@Clec4a2
Mm9::chr6:91708611..91708632,+p@chr6:91708611..91708632
+
Mm9::chr7:128207682..128207698,-p@chr7:128207682..128207698
-
Mm9::chr7:128207732..128207737,-p@chr7:128207732..128207737
-
Mm9::chr7:128207758..128207768,-p@chr7:128207758..128207768
-
Mm9::chr7:128207799..128207810,-p@chr7:128207799..128207810
-
Mm9::chr7:135282667..135282669,+p@chr7:135282667..135282669
+
Mm9::chr7:148195551..148195580,-p@chr7:148195551..148195580
-
Mm9::chr7:148195584..148195606,-p@chr7:148195584..148195606
-
Mm9::chr7:148195612..148195622,-p@chr7:148195612..148195622
-
Mm9::chr7:148195637..148195649,-p@chr7:148195637..148195649
-
Mm9::chr7:148452314..148452329,-p1@Irf7
Mm9::chr7:25877597..25877616,-p@chr7:25877597..25877616
-
Mm9::chr7:52972437..52972463,-p@chr7:52972437..52972463
-
Mm9::chr7:53174716..53174729,-p@chr7:53174716..53174729
-
Mm9::chr7:53967438..53967455,+p@chr7:53967438..53967455
+
Mm9::chr7:53967613..53967621,-p@chr7:53967613..53967621
-
Mm9::chr7:79587689..79587690,+p@chr7:79587689..79587690
+
Mm9::chr9:37046383..37046386,-p@chr9:37046383..37046386
-
Mm9::chr9:37063014..37063027,-p2@Slc37a2
Mm9::chr9:94670628..94670629,+p@chr9:94670628..94670629
+
Mm9::chrX:103798795..103798824,-p2@Cysltr1
Mm9::chrX:163645214..163645226,-p@chrX:163645214..163645226
-
Mm9::chrX:9038929..9038952,-p@chrX:9038929..9038952
-
Mm9::chrX:9046562..9046572,-p4@Cybb
Mm9::chrX:9046606..9046630,-p3@Cybb


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006955immune response0.00258691088099285
GO:00017302'-5'-oligoadenylate synthetase activity0.00324955216675001
GO:0002376immune system process0.0161953302503577
GO:0009615response to virus0.0184468511552957
GO:0051707response to other organism0.0375680241250299
GO:0005529sugar binding0.044586278054749
GO:0009607response to biotic stimulus0.044586278054749
GO:0051704multi-organism process0.044586278054749
GO:0017050D-erythro-sphingosine kinase activity0.044586278054749
GO:0006669sphinganine-1-phosphate biosynthetic process0.044586278054749
GO:0006127glycerophosphate shuttle0.044586278054749
GO:0019543propionate catabolic process0.044586278054749
GO:0015168glycerol transmembrane transporter activity0.044586278054749
GO:0046149pigment catabolic process0.044586278054749
GO:0015665alcohol transmembrane transporter activity0.044586278054749
GO:0019541propionate metabolic process0.044586278054749
GO:0015169glycerol-3-phosphate transmembrane transporter activity0.044586278054749
GO:0046511sphinganine biosynthetic process0.044586278054749
GO:0015794glycerol-3-phosphate transport0.044586278054749
GO:0048525negative regulation of viral reproduction0.044586278054749
GO:0042167heme catabolic process0.044586278054749
GO:00475472-methylcitrate dehydratase activity0.044586278054749
GO:0015793glycerol transport0.044586278054749
GO:0015166polyol transmembrane transporter activity0.044586278054749
GO:0030246carbohydrate binding0.0447124860592755



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
monopoietic cell1.63e-074
myeloid leukocyte1.63e-074
phagocyte1.63e-074
monocyte1.63e-074
macrophage1.63e-074
tissue-resident macrophage1.63e-074
macrophage dendritic cell progenitor1.63e-074
monoblast1.63e-074
promonocyte1.63e-074


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.04013e-10
MA0004.10.13741
MA0006.10.00080165
MA0007.10.0290905
MA0009.10.30757
MA0014.14.26751e-08
MA0017.10.0126039
MA0019.10.103314
MA0024.10.0233952
MA0025.11.73309
MA0027.11.26761
MA0028.10.15721
MA0029.10.220687
MA0030.10.0915563
MA0031.10.0720012
MA0038.10.480328
MA0040.10.32578
MA0041.11.42123
MA0042.10.865897
MA0043.10.210155
MA0046.10.157545
MA0048.10.115165
MA0050.15.90487
MA0051.18.34356
MA0052.10.610581
MA0055.10.00620937
MA0056.10
MA0057.10.226301
MA0058.10.174468
MA0059.10.0421975
MA0060.12.74665e-05
MA0061.10.312826
MA0063.10
MA0066.10.286064
MA0067.10.165516
MA0068.14.78712
MA0069.10.957651
MA0070.10.588708
MA0071.10.469463
MA0072.10.569179
MA0073.12.84478
MA0074.10.0562796
MA0076.10.791872
MA0077.11.63356
MA0078.10.132449
MA0081.10.523356
MA0083.10.0574325
MA0084.10.384948
MA0087.10.38775
MA0088.10.00910052
MA0089.10
MA0090.10.0896246
MA0091.10.256054
MA0092.10.153904
MA0093.10.118448
MA0095.10
MA0098.10
MA0100.10.0181382
MA0101.10.456597
MA0103.10.0607631
MA0105.10.000152851
MA0106.10.264192
MA0107.10.686927
MA0108.20.683905
MA0109.10
MA0111.10.279263
MA0113.10.0467047
MA0114.10.0256658
MA0115.10.465541
MA0116.10.0845901
MA0117.10.0488763
MA0119.10.332962
MA0122.10.444251
MA0124.10.137468
MA0125.10.336045
MA0130.10
MA0131.10.0341388
MA0132.10
MA0133.10
MA0135.10.0697746
MA0136.12.42204
MA0139.10.0230952
MA0140.10.105608
MA0141.10.547749
MA0142.10.17116
MA0143.10.12806
MA0144.10.650818
MA0145.10.0676971
MA0146.10.00200392
MA0147.10.00068648
MA0148.10.550735
MA0149.10.000176064
MA0062.20.55151
MA0035.20.487716
MA0039.20.000123854
MA0138.20.0937023
MA0002.20.511634
MA0137.20.531533
MA0104.20.000532556
MA0047.20.687397
MA0112.20.195223
MA0065.20.09259
MA0150.10.293582
MA0151.10
MA0152.10.478271
MA0153.10.262244
MA0154.10.296247
MA0155.10.049788
MA0156.13.81112
MA0157.10.283879
MA0158.10
MA0159.10.696404
MA0160.10.402601
MA0161.10
MA0162.11.52584e-08
MA0163.10.0112455
MA0164.10.400692
MA0080.23.20204
MA0018.20.0306445
MA0099.20.348355
MA0079.23.30884e-07
MA0102.20.425903
MA0258.11.09991
MA0259.10.00773062
MA0442.10
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