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UBERON:0003128

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Name:cranium
Definition:"Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
Xrefs:
links:

BILA:0000115
BTO:0001328
EFO:0000831
EHDAA:6029
EHDAA2:0000325
EMAPA:17680
FMA:71325
MA:0000316
MAT:0000340
MIAA:0000340
OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
SCTID:181889008
TAO:0000737
VHOG:0000334
XAO:0003075

ZFA:0000737
Synonyms: "bones of cranium" EXACT [FMA:71325]
"calvarium" RELATED [BTO:0001328]
"cranial skeleton" RELATED []
"epicranial plate" RELATED []
"ossa cranii" EXACT [FMA:71325, FMA:TA]
"skeletal system of head" RELATED []
Comments:The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP].
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004765(skeletal element)
part_of:UBERON:0003129(skull)



Children

part of:UBERON:0001703 (neurocranium),UBERON:0004339 (calvarium),UBERON:0004766 (cranial bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003128 (cranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_c07e35bfbcad3a9ca1580153639f40d6p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_c07e35bfbcad3a9ca1580153639f40d6p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_c07e35bfbcad3a9ca1580153639f40d6p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Strc
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_c07e35bfbcad3a9ca1580153639f40d6p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_c07e35bfbcad3a9ca1580153639f40d6p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_c07e35bfbcad3a9ca1580153639f40d6p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_c07e35bfbcad3a9ca1580153639f40d6p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_c07e35bfbcad3a9ca1580153639f40d6p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_c07e35bfbcad3a9ca1580153639f40d6p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_c07e35bfbcad3a9ca1580153639f40d6p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_c07e35bfbcad3a9ca1580153639f40d6p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_c07e35bfbcad3a9ca1580153639f40d6p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_c07e35bfbcad3a9ca1580153639f40d6p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_c07e35bfbcad3a9ca1580153639f40d6p@chrX:154140800..154140810, +

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