FF:11846-124I1

Name:	GP2+ M cell, pool2
Species:	Mouse (Mus musculus)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information
Sample information strain Balb/c tissue ileum dev stage adult sex male age NA cell type M cell cell line NA company NA collaboration Shinji Fukuda (RCAI) External link for information [{{{sample_info_link}}} {{{sample_info_link}}}] RNA information lot number M cell_b catalog number NA sample type total RNA extraction protocol (Details) OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS
Mm9 BAM CTSS [{{{mm9bam}}} download] [{{{mm9ctss}}} donwload] Mm10 BAM CTSS [{{{mm10bam}}} download] [{{{mm10ctss}}} donwload]

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

CNhs13231

0	0
1	0
10	0
100	0
1000	-0.0355
1001	-0.0749
1002	-0.116
1003	-0.123
1004	0
1005	1.267
1006	-0.436
1007	-0.0093
1008	1.685
1009	-0.19
101	-0.243
1010	0
1011	-0.337
1012	0
1013	0.31
1014	-0.0874
1015	-0.325
1016	-0.581
1017	0
1018	0.604
1019	0
102	0
1020	0
1021	0
1022	-0.0704
1023	0
1024	-0.2
1025	0
1026	0
1027	-0.048
1028	0
1029	-0.148
103	-0.0887
1030	0
1031	-0.961
1032	1.045
1033	0
1034	0
1035	0
1036	-0.183
1037	0
1038	0.0712
1039	0.08
104	0
1040	-0.983
1041	0

Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

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JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13231

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0186
MA0003.1	MA0003.1	0.342
MA0004.1	MA0004.1	0.691
MA0006.1	MA0006.1	0.0783
MA0007.1	MA0007.1	0.178
MA0009.1	MA0009.1	0.166
MA0014.1	MA0014.1	0.0838
MA0017.1	MA0017.1	1.80682e-28
MA0018.2	MA0018.2	0.596
MA0019.1	MA0019.1	0.0509
MA0024.1	MA0024.1	0.00476
MA0025.1	MA0025.1	0.533
MA0027.1	MA0027.1	0.933
MA0028.1	MA0028.1	0.0437
MA0029.1	MA0029.1	0.963
MA0030.1	MA0030.1	0.478
MA0031.1	MA0031.1	0.349
MA0035.2	MA0035.2	6.03306e-5
MA0038.1	MA0038.1	0.452
MA0039.2	MA0039.2	9.58271e-6
MA0040.1	MA0040.1	0.0959
MA0041.1	MA0041.1	0.223
MA0042.1	MA0042.1	0.222
MA0043.1	MA0043.1	0.749
MA0046.1	MA0046.1	1.08992e-55
MA0047.2	MA0047.2	0.0085
MA0048.1	MA0048.1	0.28
MA0050.1	MA0050.1	2.21285e-4
MA0051.1	MA0051.1	1.09003e-5
MA0052.1	MA0052.1	0.389
MA0055.1	MA0055.1	0.253
MA0057.1	MA0057.1	0.0717
MA0058.1	MA0058.1	0.801
MA0059.1	MA0059.1	0.831
MA0060.1	MA0060.1	0.0892
MA0061.1	MA0061.1	0.00232
MA0062.2	MA0062.2	7.52286e-5
MA0065.2	MA0065.2	2.17264e-15
MA0066.1	MA0066.1	0.0648
MA0067.1	MA0067.1	0.999
MA0068.1	MA0068.1	0.101
MA0069.1	MA0069.1	0.617
MA0070.1	MA0070.1	0.135
MA0071.1	MA0071.1	0.0303
MA0072.1	MA0072.1	0.94
MA0073.1	MA0073.1	0.844
MA0074.1	MA0074.1	0.244
MA0076.1	MA0076.1	0.135
MA0077.1	MA0077.1	0.442
MA0078.1	MA0078.1	0.507
MA0079.2	MA0079.2	0.468
MA0080.2	MA0080.2	2.12839e-5
MA0081.1	MA0081.1	0.954
MA0083.1	MA0083.1	0.46
MA0084.1	MA0084.1	0.208
MA0087.1	MA0087.1	0.238
MA0088.1	MA0088.1	0.243
MA0090.1	MA0090.1	0.471
MA0091.1	MA0091.1	0.323
MA0092.1	MA0092.1	0.595
MA0093.1	MA0093.1	0.759
MA0099.2	MA0099.2	7.2398e-11
MA0100.1	MA0100.1	0.723
MA0101.1	MA0101.1	6.52458e-6
MA0102.2	MA0102.2	0.564
MA0103.1	MA0103.1	7.95617e-7
MA0104.2	MA0104.2	0.263
MA0105.1	MA0105.1	0.115
MA0106.1	MA0106.1	0.296
MA0107.1	MA0107.1	8.79905e-6
MA0108.2	MA0108.2	0.0014
MA0111.1	MA0111.1	0.593
MA0112.2	MA0112.2	0.00189
MA0113.1	MA0113.1	0.55
MA0114.1	MA0114.1	7.3462e-33
MA0115.1	MA0115.1	7.95636e-15
MA0116.1	MA0116.1	0.303
MA0117.1	MA0117.1	0.385
MA0119.1	MA0119.1	0.0743
MA0122.1	MA0122.1	0.786
MA0124.1	MA0124.1	0.596
MA0125.1	MA0125.1	0.678
MA0131.1	MA0131.1	0.721
MA0135.1	MA0135.1	0.243
MA0136.1	MA0136.1	1.21742e-9
MA0137.2	MA0137.2	0.0082
MA0138.2	MA0138.2	0.896
MA0139.1	MA0139.1	0.193
MA0140.1	MA0140.1	0.151
MA0141.1	MA0141.1	1.63856e-7
MA0142.1	MA0142.1	0.0786
MA0143.1	MA0143.1	0.229
MA0144.1	MA0144.1	0.00134
MA0145.1	MA0145.1	0.014
MA0146.1	MA0146.1	0.0744
MA0147.1	MA0147.1	0.341
MA0148.1	MA0148.1	0.00633
MA0149.1	MA0149.1	0.0403
MA0150.1	MA0150.1	0.013
MA0152.1	MA0152.1	0.105
MA0153.1	MA0153.1	7.69532e-45
MA0154.1	MA0154.1	0.075
MA0155.1	MA0155.1	0.832
MA0156.1	MA0156.1	6.74088e-5
MA0157.1	MA0157.1	0.817
MA0159.1	MA0159.1	1.85653e-4
MA0160.1	MA0160.1	2.33813e-5
MA0162.1	MA0162.1	0.762
MA0163.1	MA0163.1	0.416
MA0164.1	MA0164.1	0.917
MA0258.1	MA0258.1	0.0289
MA0259.1	MA0259.1	0.663

FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13231

Novel motif	Logo	P-value
1	1	0.168
10	10	0.284
100	100	0.881
101	101	0.783
102	102	0.888
103	103	0.382
104	104	0.998
105	105	0.112
106	106	0.0107
107	107	0.123
108	108	0.645
109	109	0.031
11	11	0.142
110	110	0.466
111	111	0.121
112	112	0.0164
113	113	0.206
114	114	0.145
115	115	0.857
116	116	0.0785
117	117	0.0343
118	118	0.579
119	119	0.144
12	12	0.583
120	120	0.692
121	121	0.338
122	122	0.951
123	123	0.0733
124	124	0.227
125	125	0.234
126	126	0.0582
127	127	0.187
128	128	0.134
129	129	0.127
13	13	9.40537e-5
130	130	0.807
131	131	0.746
132	132	0.639
133	133	0.293
134	134	0.917
135	135	0.135
136	136	0.0155
137	137	0.765
138	138	0.155
139	139	0.143
14	14	0.67
140	140	0.804
141	141	0.125
142	142	0.841
143	143	0.219
144	144	0.287
145	145	0.167
146	146	0.21
147	147	0.59
148	148	0.695
149	149	0.804
15	15	0.123
150	150	0.405
151	151	0.847
152	152	0.0159
153	153	0.77
154	154	0.758
155	155	0.289
156	156	0.0964
157	157	0.34
158	158	0.561
159	159	0.627
160	160	0.705
161	161	0.788
162	162	0.772
163	163	0.251
164	164	0.1
165	165	0.09
166	166	0.916
167	167	0.787
168	168	0.91
169	169	0.0331
17	17	0.0274
18	18	0.999
19	19	0.314
2	2	0.685
20	20	0.322
21	21	0.998
22	22	0.241
23	23	0.455
24	24	0.548
25	25	0.446
26	26	0.0115
27	27	0.957
28	28	0.324
29	29	0.0686
3	3	0.207
30	30	0.372
31	31	0.774
32	32	0.363
33	33	0.275
34	34	0.729
35	35	0.833
36	36	0.584
37	37	0.0324
38	38	0.421
39	39	0.441
4	4	0.261
40	40	0.176
41	41	0.0953
42	42	0.716
43	43	0.288
44	44	0.277
45	45	0.337
46	46	0.368
47	47	0.48
48	48	0.264
49	49	0.351
5	5	0.633
50	50	0.417
51	51	0.605
52	52	0.128
53	53	0.509
54	54	0.391
55	55	0.541
56	56	0.502
57	57	0.94
58	58	0.239
59	59	0.243
6	6	0.638
60	60	0.0314
61	61	0.341
62	62	0.214
63	63	0.0955
64	64	0.752
65	65	0.284
66	66	0.997
67	67	0.655
68	68	0.0548
69	69	0.988
7	7	0.0672
70	70	0.00331
71	71	0.153
72	72	0.3
73	73	0.0183
74	74	0.981
75	75	0.0184
76	76	0.689
77	77	0.0711
78	78	0.0267
79	79	0.924
8	8	0.279
80	80	0.749
81	81	0.955
82	82	0.0942
83	83	0.334
84	84	0.0759
85	85	0.115
86	86	0.139
87	87	0.0115
88	88	0.268
89	89	0.247
9	9	0.94
90	90	0.335
91	91	0.66
92	92	0.54
93	93	0.222
94	94	0.783
95	95	0.00465
96	96	0.922
97	97	0.809
98	98	0.626
99	99	0.418

de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13231

FANTOM5 (FF) ontology

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Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000103 mouse sample
FF:0011159 mouse GP2-positive M cell sample

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
0000473 (defensive cell)
0000548 (animal cell)
0000627 (transporting cell)
0000682 (M cell of gut)
0002371 (somatic cell)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA