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MCL coexpression mm9:1227

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:127617262..127617274,-p7@Rbms2
Mm9::chr10:127617285..127617310,-p6@Rbms2
Mm9::chr10:127617321..127617363,-p5@Rbms2
Mm9::chr15:101932629..101932673,+p2@Tenc1
Mm9::chr15:101933357..101933406,+p1@Tenc1
Mm9::chr18:61204793..61204860,+p1@Pdgfrb


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
splanchnic layer of lateral plate mesoderm1.08e-1133
cardiovascular system3.09e-1123
circulatory system3.09e-1123
trunk8.82e-0990
lung3.18e-0814
respiratory tube3.18e-0814
respiration organ3.18e-0814
pair of lungs3.18e-0814
lung primordium3.18e-0814
lung bud3.18e-0814
primary circulatory organ3.35e-0818
heart3.35e-0818
primitive heart tube3.35e-0818
primary heart field3.35e-0818
anterior lateral plate mesoderm3.35e-0818
heart tube3.35e-0818
heart primordium3.35e-0818
cardiac mesoderm3.35e-0818
cardiogenic plate3.35e-0818
heart rudiment3.35e-0818
trunk region element3.86e-0879
subdivision of trunk1.67e-0766


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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