FF:1283-20G3

Name:	heart, embryo E18
Species:	Mouse (Mus musculus)
Library ID:	{{{library_id}}}
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information
Sample information strain C57BL/6J tissue heart dev stage 18 days embryo sex mixture age NA cell type CELL MIXTURE - tissue sample cell line NA company NA collaboration FANTOM5 OSC CORE (contact: Al Forrest) External link for information [{{{sample_info_link}}} {{{sample_info_link}}}] RNA information lot number NA catalog number NA sample type NA extraction protocol (Details) NA

CAGE Accession numbers
Method Sample accession id CAGE  DRS008841 Library accession numbers Library id Method Exp. accession id Run accession id {{{library_id}}} {{{accession_numbers}}} Accession ID Mm9 Library id BAM CTSS {{{library_id}}} Accession ID Mm10 Library id BAM CTSS {{{library_id}}}

Download raw sequence, BAM & CTSS
Mm9 BAM CTSS [{{{mm9bam}}} download] [{{{mm9ctss}}} donwload] Mm10 BAM CTSS [{{{mm10bam}}} download] [{{{mm10ctss}}} donwload]

Relative expression to median (log10)

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Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

CNhs11030

0	0
1	0
10	0.369
100	0
1000	0.329
1001	0.38
1002	0.263
1003	-0.123
1004	0
1005	-0.148
1006	0.361
1007	-0.00391
1008	0
1009	0.217
101	-0.05
1010	0
1011	-0.108
1012	0
1013	-0.113
1014	0.229
1015	-0.00234
1016	0.191
1017	0
1018	0
1019	0
102	0
1020	0
1021	-0.0487
1022	0.57
1023	0
1024	0.356
1025	0.0421
1026	0.103
1027	0.0422
1028	0
1029	0.14
103	0.155
1030	0
1031	0.256
1032	0.0588
1033	0
1034	0
1035	0.566
1036	-0.0697
1037	0
1038	0.118
1039	0.299
104	0
1040	0.17
1041	0

Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

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JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11030

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00894
MA0003.1	MA0003.1	0.648
MA0004.1	MA0004.1	0.0712
MA0006.1	MA0006.1	0.429
MA0007.1	MA0007.1	0.69
MA0009.1	MA0009.1	0.964
MA0014.1	MA0014.1	0.407
MA0017.1	MA0017.1	0.0588
MA0018.2	MA0018.2	0.236
MA0019.1	MA0019.1	0.88
MA0024.1	MA0024.1	0.194
MA0025.1	MA0025.1	0.332
MA0027.1	MA0027.1	0.529
MA0028.1	MA0028.1	0.111
MA0029.1	MA0029.1	0.687
MA0030.1	MA0030.1	0.105
MA0031.1	MA0031.1	0.154
MA0035.2	MA0035.2	0.127
MA0038.1	MA0038.1	0.567
MA0039.2	MA0039.2	0.707
MA0040.1	MA0040.1	0.0956
MA0041.1	MA0041.1	0.355
MA0042.1	MA0042.1	0.501
MA0043.1	MA0043.1	0.0961
MA0046.1	MA0046.1	6.63961e-18
MA0047.2	MA0047.2	0.225
MA0048.1	MA0048.1	0.0453
MA0050.1	MA0050.1	0.0031
MA0051.1	MA0051.1	0.0197
MA0052.1	MA0052.1	1.07261e-39
MA0055.1	MA0055.1	2.72853e-5
MA0057.1	MA0057.1	0.827
MA0058.1	MA0058.1	0.153
MA0059.1	MA0059.1	0.336
MA0060.1	MA0060.1	0.326
MA0061.1	MA0061.1	0.334
MA0062.2	MA0062.2	3.76435e-7
MA0065.2	MA0065.2	0.772
MA0066.1	MA0066.1	0.539
MA0067.1	MA0067.1	0.641
MA0068.1	MA0068.1	0.412
MA0069.1	MA0069.1	0.325
MA0070.1	MA0070.1	0.853
MA0071.1	MA0071.1	0.158
MA0072.1	MA0072.1	0.223
MA0073.1	MA0073.1	0.954
MA0074.1	MA0074.1	0.467
MA0076.1	MA0076.1	0.00242
MA0077.1	MA0077.1	0.679
MA0078.1	MA0078.1	0.629
MA0079.2	MA0079.2	0.569
MA0080.2	MA0080.2	9.12248e-4
MA0081.1	MA0081.1	0.682
MA0083.1	MA0083.1	2.98134e-21
MA0084.1	MA0084.1	0.488
MA0087.1	MA0087.1	0.307
MA0088.1	MA0088.1	0.448
MA0090.1	MA0090.1	5.04937e-6
MA0091.1	MA0091.1	0.717
MA0092.1	MA0092.1	0.472
MA0093.1	MA0093.1	0.0851
MA0099.2	MA0099.2	3.07508e-5
MA0100.1	MA0100.1	0.48
MA0101.1	MA0101.1	0.363
MA0102.2	MA0102.2	0.00942
MA0103.1	MA0103.1	1.65091e-5
MA0104.2	MA0104.2	0.233
MA0105.1	MA0105.1	0.881
MA0106.1	MA0106.1	0.849
MA0107.1	MA0107.1	0.521
MA0108.2	MA0108.2	0.151
MA0111.1	MA0111.1	0.527
MA0112.2	MA0112.2	0.0137
MA0113.1	MA0113.1	0.741
MA0114.1	MA0114.1	0.00176
MA0115.1	MA0115.1	0.446
MA0116.1	MA0116.1	0.273
MA0117.1	MA0117.1	0.645
MA0119.1	MA0119.1	0.0241
MA0122.1	MA0122.1	0.388
MA0124.1	MA0124.1	0.839
MA0125.1	MA0125.1	0.519
MA0131.1	MA0131.1	0.988
MA0135.1	MA0135.1	0.231
MA0136.1	MA0136.1	1.29563e-4
MA0137.2	MA0137.2	0.0697
MA0138.2	MA0138.2	0.685
MA0139.1	MA0139.1	0.399
MA0140.1	MA0140.1	0.232
MA0141.1	MA0141.1	3.16984e-10
MA0142.1	MA0142.1	0.0291
MA0143.1	MA0143.1	0.493
MA0144.1	MA0144.1	0.905
MA0145.1	MA0145.1	0.785
MA0146.1	MA0146.1	0.211
MA0147.1	MA0147.1	0.23
MA0148.1	MA0148.1	0.304
MA0149.1	MA0149.1	0.316
MA0150.1	MA0150.1	0.0391
MA0152.1	MA0152.1	0.641
MA0153.1	MA0153.1	2.34209e-11
MA0154.1	MA0154.1	0.131
MA0155.1	MA0155.1	0.0635
MA0156.1	MA0156.1	1.53933e-6
MA0157.1	MA0157.1	0.56
MA0159.1	MA0159.1	0.00245
MA0160.1	MA0160.1	6.95184e-5
MA0162.1	MA0162.1	0.0566
MA0163.1	MA0163.1	0.98
MA0164.1	MA0164.1	0.177
MA0258.1	MA0258.1	0.198
MA0259.1	MA0259.1	0.561

FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11030

Novel motif	Logo	P-value
1	1	0.258
10	10	0.754
100	100	0.744
101	101	0.54
102	102	0.923
103	103	0.441
104	104	0.698
105	105	0.259
106	106	0.889
107	107	0.589
108	108	0.641
109	109	0.293
11	11	0.78
110	110	0.184
111	111	0.273
112	112	0.167
113	113	0.509
114	114	0.727
115	115	0.954
116	116	0.343
117	117	0.932
118	118	0.561
119	119	0.459
12	12	0.407
120	120	0.0615
121	121	0.79
122	122	0.198
123	123	0.455
124	124	0.305
125	125	0.83
126	126	0.675
127	127	0.225
128	128	0.353
129	129	0.422
13	13	6.45798e-5
130	130	0.739
131	131	0.766
132	132	0.801
133	133	0.433
134	134	0.781
135	135	0.953
136	136	0.209
137	137	0.209
138	138	0.14
139	139	0.988
14	14	0.445
140	140	0.703
141	141	0.552
142	142	0.735
143	143	0.425
144	144	0.235
145	145	0.124
146	146	0.554
147	147	0.937
148	148	0.883
149	149	0.099
15	15	0.926
150	150	0.216
151	151	0.269
152	152	0.362
153	153	0.621
154	154	0.721
155	155	0.0439
156	156	0.355
157	157	0.849
158	158	0.259
159	159	0.0524
160	160	0.296
161	161	0.696
162	162	0.672
163	163	0.894
164	164	0.505
165	165	0.0198
166	166	0.415
167	167	0.647
168	168	0.37
169	169	3.5324e-4
17	17	0.779
18	18	0.0195
19	19	0.0787
2	2	0.776
20	20	0.366
21	21	0.63
22	22	0.172
23	23	0.71
24	24	0.885
25	25	0.82
26	26	0.0108
27	27	0.263
28	28	0.221
29	29	0.835
3	3	0.946
30	30	0.0541
31	31	0.732
32	32	0.457
33	33	0.394
34	34	0.231
35	35	0.445
36	36	0.117
37	37	0.128
38	38	0.949
39	39	0.899
4	4	0.306
40	40	0.0193
41	41	0.863
42	42	0.588
43	43	0.482
44	44	0.835
45	45	0.24
46	46	0.886
47	47	0.98
48	48	0.702
49	49	0.382
5	5	0.775
50	50	0.315
51	51	0.801
52	52	0.732
53	53	0.847
54	54	0.896
55	55	0.224
56	56	0.919
57	57	0.383
58	58	0.909
59	59	0.0304
6	6	0.0498
60	60	0.681
61	61	0.872
62	62	0.557
63	63	0.207
64	64	0.752
65	65	0.775
66	66	0.354
67	67	0.959
68	68	0.458
69	69	0.15
7	7	0.104
70	70	0.0423
71	71	0.0118
72	72	0.118
73	73	0.15
74	74	0.299
75	75	0.435
76	76	0.961
77	77	0.42
78	78	0.314
79	79	0.434
8	8	0.912
80	80	0.0508
81	81	0.522
82	82	0.974
83	83	0.706
84	84	0.63
85	85	0.169
86	86	0.552
87	87	4.07694e-5
88	88	0.46
89	89	0.0465
9	9	0.168
90	90	0.909
91	91	0.132
92	92	0.485
93	93	0.273
94	94	0.637
95	95	0.169
96	96	0.414
97	97	0.23
98	98	0.609
99	99	0.881

de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11030

FANTOM5 (FF) ontology

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Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011515 mouse heart- embryo E18 sample

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000302 (mouse embryonic day 18 sample)
0011515 (mouse heart- embryo E18 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

{{{1}}} Accession numbers
Method Sample accession id {{{2}}}  Library accession numbers Library id Method Exp. accession id Run accession id {{{4}}} {{{3}}} Accession ID Library id BAM CTSS {{{4}}} Accession ID Library id BAM CTSS {{{4}}}