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MCL coexpression mm9:201

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:69828848..69828937,-p1@Acadvl
Mm9::chr11:88725823..88725841,-p2@Akap1
Mm9::chr14:21871816..21871855,+p2@Adk
Mm9::chr15:103418824..103418832,-p@chr15:103418824..103418832
-
Mm9::chr15:82184710..82184721,-p2@Ndufa6
Mm9::chr17:24563621..24563646,+p1@Eci1
Mm9::chr17:56256688..56256706,-p1@Plin5
Mm9::chr17:56257000..56257011,-p3@Plin5
Mm9::chr18:68459803..68459847,-p2@4933403F05Rik
Mm9::chr18:74938857..74938878,+p1@Acaa2
Mm9::chr19:43827414..43827491,-p1@Cox15
Mm9::chr1:167391466..167391477,+p3@Brp44
Mm9::chr1:66909828..66909833,-p4@Acadl
Mm9::chr1:66909839..66909859,-p1@Acadl
Mm9::chr1:66909874..66909889,-p2@Acadl
Mm9::chr1:66909891..66909909,-p3@Acadl
Mm9::chr2:108788925..108788937,+p1@ENSMUST00000121752
Mm9::chr2:32464505..32464553,+p5@St6galnac6
Mm9::chr2:4840050..4840084,+p2@Phyh
Mm9::chr3:153607389..153607416,-p2@Acadm
Mm9::chr3:153607425..153607478,-p1@Acadm
Mm9::chr3:33980178..33980269,-p1@Dnajc19
p1@Gm15118
Mm9::chr3:79432582..79432667,-p1@Etfdh
Mm9::chr4:137280361..137280390,+p4@Rap1gap
Mm9::chr4:15872506..15872535,-p1@Decr1
Mm9::chr4:19502286..19502363,+p1@Fam82b
Mm9::chr4:19502710..19502737,+p@chr4:19502710..19502737
+
Mm9::chr4:19502743..19502759,+p@chr4:19502743..19502759
+
Mm9::chr4:59594547..59594554,+p3@Hsdl2
Mm9::chr4:59594569..59594586,+p1@Hsdl2
Mm9::chr4:59594593..59594604,+p2@Hsdl2
Mm9::chr5:115569286..115569354,-p1@Acads
Mm9::chr5:30481496..30481526,-p1@Hadha
Mm9::chr5:30481641..30481652,-p2@Hadha
Mm9::chr5:30481783..30481851,+p1@Hadhb
p1@LOC100504946
Mm9::chr5:30481855..30481876,+p2@Hadhb
p2@LOC100504946
Mm9::chr6:57642001..57642078,-p1@Pigy
Mm9::chr6:73198627..73198689,+p1@Suclg1
Mm9::chr7:147302294..147302327,-p1@Echs1
Mm9::chr7:29610320..29610333,+p2@Ech1
Mm9::chr7:29610337..29610382,+p1@Ech1
Mm9::chr7:50699474..50699512,+p1@Etfb
Mm9::chr8:23521850..23521932,+p1@Mrps31
Mm9::chr8:3279464..3279482,-p3@Insr
Mm9::chr9:53418434..53418472,-p1@Acat1
Mm9::chr9:55359963..55360037,-p1@Etfa
Mm9::chrX:45866562..45866615,-p1@Aifm1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005739mitochondrion1.65811560632517e-24
GO:0044444cytoplasmic part2.17946459373208e-15
GO:0006631fatty acid metabolic process3.82667074135426e-12
GO:0032787monocarboxylic acid metabolic process5.12862614991152e-11
GO:0005737cytoplasm1.964865736978e-10
GO:0044255cellular lipid metabolic process3.34493415359138e-10
GO:0006629lipid metabolic process1.28791363384986e-09
GO:0044429mitochondrial part1.28791363384986e-09
GO:0016491oxidoreductase activity1.29731816147466e-09
GO:0043231intracellular membrane-bound organelle2.05668062419536e-09
GO:0043227membrane-bound organelle2.05668062419536e-09
GO:0050660FAD binding1.07635838369545e-08
GO:0019752carboxylic acid metabolic process2.21887555043635e-08
GO:0006082organic acid metabolic process2.21887555043635e-08
GO:0031966mitochondrial membrane6.95686117003045e-08
GO:0017133mitochondrial electron transfer flavoprotein complex6.95686117003045e-08
GO:0045251electron transfer flavoprotein complex6.95686117003045e-08
GO:0043229intracellular organelle8.31833272040718e-08
GO:0043226organelle8.31833272040718e-08
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors9.42708710462091e-08
GO:0005740mitochondrial envelope9.98768518676619e-08
GO:0006091generation of precursor metabolites and energy1.30954445229854e-07
GO:0003995acyl-CoA dehydrogenase activity1.31583543614201e-07
GO:0006118electron transport3.00563266219292e-07
GO:0050662coenzyme binding3.19863354718234e-07
GO:0005743mitochondrial inner membrane6.94884590039665e-07
GO:0019866organelle inner membrane8.41320618852152e-07
GO:0031090organelle membrane8.41320618852152e-07
GO:0031975envelope9.4794313635429e-07
GO:0031967organelle envelope9.4794313635429e-07
GO:0048037cofactor binding2.34431853847999e-06
GO:0016408C-acyltransferase activity6.04619670303629e-06
GO:0044424intracellular part9.81965099562373e-06
GO:0016649oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor2.23136533387483e-05
GO:0004174electron-transferring-flavoprotein dehydrogenase activity2.23136533387483e-05
GO:0005622intracellular2.23136533387483e-05
GO:0019395fatty acid oxidation3.57827918294243e-05
GO:0003988acetyl-CoA C-acyltransferase activity6.3051334652743e-05
GO:0004300enoyl-CoA hydratase activity0.000119679395567415
GO:0003985acetyl-CoA C-acetyltransferase activity0.000119679395567415
GO:0016453C-acetyltransferase activity0.000194408750444265
GO:0009055electron carrier activity0.000473241497485848
GO:0005759mitochondrial matrix0.000596910453837229
GO:0031980mitochondrial lumen0.000596910453837229
GO:0006635fatty acid beta-oxidation0.00137074076337276
GO:0016645oxidoreductase activity, acting on the CH-NH group of donors0.00323241232455029
GO:0044446intracellular organelle part0.00323241232455029
GO:0044422organelle part0.00326303287681961
GO:0004466long-chain-acyl-CoA dehydrogenase activity0.00930571099858341
GO:0004001adenosine kinase activity0.00930571099858341
GO:0009054electron acceptor activity0.00930571099858341
GO:0000506glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex0.00930571099858341
GO:0016508long-chain-enoyl-CoA hydratase activity0.00930571099858341
GO:0004085butyryl-CoA dehydrogenase activity0.00930571099858341
GO:0048244phytanoyl-CoA dioxygenase activity0.00930571099858341
GO:0016509long-chain-3-hydroxyacyl-CoA dehydrogenase activity0.00930571099858341
GO:0044238primary metabolic process0.0134292477774332
GO:0008415acyltransferase activity0.0134292477774332
GO:0019867outer membrane0.0134292477774332
GO:0016747transferase activity, transferring groups other than amino-acyl groups0.0134921306993982
GO:0016836hydro-lyase activity0.0146278648282746
GO:0016746transferase activity, transferring acyl groups0.0146278648282746
GO:0017076purine nucleotide binding0.0152679599825912
GO:0004776succinate-CoA ligase (GDP-forming) activity0.0155438834799722
GO:0001561fatty acid alpha-oxidation0.0155438834799722
GO:0001665alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity0.0155438834799722
GO:00086702,4-dienoyl-CoA reductase (NADPH) activity0.0155438834799722
GO:0016407acetyltransferase activity0.0170747080902416
GO:0030554adenyl nucleotide binding0.0170747080902416
GO:0044464cell part0.0170747080902416
GO:0005623cell0.0170747080902416
GO:0016835carbon-oxygen lyase activity0.0179611104752788
GO:0001574ganglioside biosynthetic process0.0202722378490755
GO:0043174nucleoside salvage0.0202722378490755
GO:0004774succinate-CoA ligase activity0.0202722378490755
GO:0006166purine ribonucleoside salvage0.0202722378490755
GO:0043101purine salvage0.0202722378490755
GO:0046467membrane lipid biosynthetic process0.0244534639900949
GO:0000166nucleotide binding0.02536204098249
GO:0046128purine ribonucleoside metabolic process0.02536204098249
GO:0009437carnitine metabolic process0.02536204098249
GO:0043094metabolic compound salvage0.02536204098249
GO:0005498sterol carrier activity0.030560194247214
GO:0042278purine nucleoside metabolic process0.030560194247214
GO:0006688glycosphingolipid biosynthetic process0.030560194247214
GO:0044237cellular metabolic process0.0319559371146957
GO:0042579microbody0.0319559371146957
GO:0005777peroxisome0.0319559371146957
GO:0006309DNA fragmentation during apoptosis0.0399021080604241
GO:0016405CoA-ligase activity0.0399021080604241
GO:0009119ribonucleoside metabolic process0.0399021080604241
GO:0009409response to cold0.0436488458499015
GO:0001573ganglioside metabolic process0.0436488458499015
GO:0009247glycolipid biosynthetic process0.0436488458499015
GO:0006921cell structure disassembly during apoptosis0.0436488458499015
GO:0042594response to starvation0.0480556462130121
GO:0030262apoptotic nuclear changes0.0480556462130121



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
epithelial tube4.09e-1447
digestive tract diverticulum1.05e-0823
sac1.05e-0823
exocrine gland1.26e-0825
exocrine system1.26e-0825
mesenchyme1.70e-0861
entire embryonic mesenchyme1.70e-0861
liver1.71e-0822
epithelial sac1.71e-0822
digestive gland1.71e-0822
epithelium of foregut-midgut junction1.71e-0822
anatomical boundary1.71e-0822
hepatobiliary system1.71e-0822
foregut-midgut junction1.71e-0822
hepatic diverticulum1.71e-0822
liver primordium1.71e-0822
septum transversum1.71e-0822
liver bud1.71e-0822
primary circulatory organ2.85e-0718
heart2.85e-0718
primitive heart tube2.85e-0718
primary heart field2.85e-0718
anterior lateral plate mesoderm2.85e-0718
heart tube2.85e-0718
heart primordium2.85e-0718
cardiac mesoderm2.85e-0718
cardiogenic plate2.85e-0718
heart rudiment2.85e-0718
intestine2.97e-0731
abdomen element3.91e-0749
abdominal segment element3.91e-0749
abdominal segment of trunk3.91e-0749
abdomen3.91e-0749
trunk mesenchyme4.48e-0745
cardiovascular system5.49e-0723
circulatory system5.49e-0723


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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