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MCL coexpression mm9:3199

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Phase1 CAGE Peaks

 Short description
Mm9::chr19:44769950..44769971,-p1@ENSMUST00000166501
Mm9::chr9:104469063..104469075,+p7@Cpne4
Mm9::chr9:104469098..104469103,+p11@Cpne4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
neuron of cerebral cortex1.65e-076

Uber Anatomy
Ontology termp-valuen
brain grey matter1.15e-0929
regional part of telencephalon1.15e-0929
telencephalon1.15e-0929
regional part of forebrain1.79e-0939
forebrain1.79e-0939
future forebrain1.79e-0939
anterior neural tube3.63e-0940
brain1.04e-0847
future brain1.04e-0847
regional part of nervous system1.55e-0854
gray matter6.62e-0834
regional part of brain1.33e-0746
cerebral cortex2.27e-0721
cerebral hemisphere2.27e-0721
pallium2.27e-0721
pre-chordal neural plate5.75e-0749
Ammon's horn6.10e-077
lobe parts of cerebral cortex6.10e-077
hippocampal formation6.10e-077
limbic system6.10e-077
limbic lobe6.10e-077


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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