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MCL coexpression mm9:993

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Phase1 CAGE Peaks

 Short description
Mm9::chr3:30993616..30993634,+p3@Skil
Mm9::chr3:87329494..87329565,+p1@Etv3
Mm9::chr3:87329568..87329589,+p2@Etv3
Mm9::chr4:155186603..155186638,+p1@Ccnl2
Mm9::chr4:59202074..59202085,+p3@Ugcg
Mm9::chr4:59202112..59202126,+p2@Ugcg
Mm9::chr5:109058705..109058726,-p2@Gak
Mm9::chr7:125386876..125386926,-p2@Smg1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0006679glucosylceramide biosynthetic process0.0183511363443851
GO:0046476glycosylceramide biosynthetic process0.0183511363443851
GO:0008120ceramide glucosyltransferase activity0.0183511363443851
GO:0006678glucosylceramide metabolic process0.0183511363443851
GO:0046513ceramide biosynthetic process0.0244574589523605
GO:0006688glycosphingolipid biosynthetic process0.0244574589523605
GO:0006677glycosylceramide metabolic process0.0244574589523605
GO:0035251UDP-glucosyltransferase activity0.0244574589523605
GO:0046520sphingoid biosynthetic process0.0244574589523605
GO:0046527glucosyltransferase activity0.0256775179255801
GO:0009247glycolipid biosynthetic process0.0266750174125593
GO:0017053transcriptional repressor complex0.0282077778601329
GO:0006687glycosphingolipid metabolic process0.0282077778601329
GO:0030148sphingolipid biosynthetic process0.0359484775696386
GO:0006664glycolipid metabolic process0.0359484775696386
GO:0043231intracellular membrane-bound organelle0.0359484775696386
GO:0043227membrane-bound organelle0.0359484775696386
GO:0006672ceramide metabolic process0.0467895503180661
GO:0046519sphingoid metabolic process0.0481709005625808



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
endoderm-derived structure9.33e-17118
endoderm9.33e-17118
presumptive endoderm9.33e-17118
digestive system3.65e-16116
digestive tract3.65e-16116
primitive gut3.65e-16116
subdivision of digestive tract3.85e-15114
gastrointestinal system2.79e-1047
intestine2.03e-0931
hemolymphoid system2.90e-0848
immune system2.90e-0848
mixed endoderm/mesoderm-derived structure3.14e-0835
organ component layer1.55e-0724
hematopoietic system6.07e-0745
blood island6.07e-0745
hemopoietic organ8.75e-0729
immune organ8.75e-0729
mucosa9.13e-0715


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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