MCL coexpression mm9:2191

Phase1 CAGE Peaks

	Short description
Mm9::chr17:15569173..15569184,-	p@chr17:15569173..15569184 -
Mm9::chr2:52228029..52228052,-	p@chr2:52228029..52228052 -
Mm9::chr2:52228056..52228070,-	p@chr2:52228056..52228070 -
Mm9::chr2:52228080..52228089,-	p@chr2:52228080..52228089 -

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

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Uber Anatomy

Ontology term	p-value	n
hindlimb bud	8.19e-09	5
stylopod	8.19e-09	5
lower limb segment	8.19e-09	5
multi-limb segment region	8.19e-09	5
pelvic appendage	8.19e-09	5
limb segment	8.19e-09	5
paired limb/fin segment	8.19e-09	5
pelvic appendage bud	8.19e-09	5
subdivision of organism along appendicular axis	8.19e-09	5
leg	8.19e-09	5
hindlimb	8.19e-09	5
hindlimb stylopod	8.19e-09	5
posterior region of body	8.19e-09	5
pelvic complex	8.19e-09	5
hindlimb/pelvic fin field	8.19e-09	5
femur	3.39e-07	4
hindlimb long bone	3.39e-07	4
upper leg bone	3.39e-07	4
bone of hip region	3.39e-07	4
skeleton of limb	3.39e-07	4
pelvic appendage skeleton	3.39e-07	4
subdivision of skeleton	3.39e-07	4
endochondral bone	3.39e-07	4
bone of free limb or fin	3.39e-07	4
bone of appendage girdle complex	3.39e-07	4
endochondral element	3.39e-07	4
hindlimb mesenchyme	3.39e-07	4
limb bone	3.39e-07	4
bone of pelvic complex	3.39e-07	4
long bone	3.39e-07	4
hindlimb bone	3.39e-07	4
limb long bone	3.39e-07	4
leg bone	3.39e-07	4
limb mesenchyme	3.39e-07	4
limb skeleton subdivision	3.39e-07	4
hindlimb bone pre-cartilage condensation	3.39e-07	4
upper leg mesenchyme	3.39e-07	4
hindlimb cartilage element	3.39e-07	4
limb cartilage element	3.39e-07	4
limb bone pre-cartilage condensation	3.39e-07	4
cartilage element	3.39e-07	4
hindlimb skeleton	3.39e-07	4
appendicular skeletal system	3.39e-07	4
appendicular skeleton	3.39e-07	4
limb of embryo	3.39e-07	4
skeleton	3.39e-07	4
femur cartilage element	3.39e-07	4
femur pre-cartilage condensation	3.39e-07	4

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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