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UBERON:0005728

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Name:extraembryonic mesoderm
Namespace:FANTOM
Definition:"." [1]
Xrefs:
links:

EHDAA2:0000474

VHOG:0000616
Synonyms: "extra-embryonic mesoderm" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue),UBERON:0007524(dense mesenchyme tissue)
develops_from:UBERON:0003081(lateral plate mesoderm),UBERON:0008780(inner cell mass derived epiblast)
part_of:UBERON:0016887(entire extraembryonic component)



Children

develops from:UBERON:0007806 (connecting stalk)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005728 (extraembryonic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr2:2930946..2930963,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:2930946..2930963, +
1.1e-59FFCP PHASE2:Hg19::chrX:109653507..109653518,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:109653507..109653518, +
1.1e-59FFCP PHASE1:Hg19::chr12:129054695..129054717,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:129054695..129054717, -
1.1e-59FFCP PHASE2:Hg19::chr19:53511711..53511720,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:53511711..53511720, -
1.1e-59FFCP PHASE2:Hg19::chr7:135705366..135705371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135705366..135705371, +
1.1e-59FFCP PHASE2:Hg19::chr21:18179708..18179733,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18179708..18179733, -
1.1e-59FFCP PHASE2:Hg19::chr9:74995216..74995247,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74995216..74995247, -
1.1e-59FFCP PHASE2:Hg19::chr10:120921395..120921406,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:120921395..120921406, -
1.1e-59FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:87324164..87324175, +
1.1e-59FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:149490934..149490939, -
1.1e-59FFCP PHASE2:Hg19::chr6:87324188..87324195,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:87324188..87324195, +
1.1e-59FFCP PHASE2:Hg19::chr3:45926316..45926329,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:45926316..45926329, -
1.1e-59FFCP PHASE2:Hg19::chrX:10129292..10129306,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:10129292..10129306, +
1.1e-59FFCP PHASE2:Hg19::chr6:150322254..150322291,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:150322254..150322291, -
1.1e-59FFCP PHASE2:Hg19::chr10:31996512..31996530,-#_f1700f6fa279d66bc6746540ac32fc48p5@ENST00000433770
1.1e-59FFCP PHASE1:Hg19::chr7:106363860..106363870,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106363860..106363870, -
1.1e-59FFCP PHASE2:Hg19::chr5:77713534..77713543,+#_f1700f6fa279d66bc6746540ac32fc48p@chr5:77713534..77713543, +
1.1e-59FFCP PHASE1:Hg19::chr2:148293141..148293150,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148293141..148293150, +
1.1e-59FFCP PHASE1:Hg19::chr10:15035430..15035449,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:15035430..15035449, -
1.1e-59FFCP PHASE1:Hg19::chr3:119279036..119279047,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119279036..119279047, +
1.1e-59FFCP PHASE1:Hg19::chr5:28145264..28145272,-#_f1700f6fa279d66bc6746540ac32fc48p@chr5:28145264..28145272, -
1.1e-59FFCP PHASE1:Hg19::chrX:109653507..109653518,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:109653507..109653518, +
1.1e-59FFCP PHASE2:Hg19::chr8:59970765..59970787,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:59970765..59970787, -
1.1e-59FFCP PHASE2:Hg19::chr20:33691683..33691699,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:33691683..33691699, +
1.1e-59FFCP PHASE1:Hg19::chr19:53511711..53511720,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:53511711..53511720, -
1.1e-59FFCP PHASE1:Hg19::chr14:76017386..76017395,-#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76017386..76017395, -
1.1e-59FFCP PHASE2:Hg19::chr7:106397597..106397610,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106397597..106397610, +
1.1e-59FFCP PHASE2:Hg19::chr6:31150998..31151005,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:31150998..31151005, -
1.1e-59FFCP PHASE2:Hg19::chr3:153038353..153038371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:153038353..153038371, +
1.1e-59FFCP PHASE1:Hg19::chr7:135705366..135705371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135705366..135705371, +
1.1e-59FFCP PHASE1:Hg19::chr21:18179708..18179733,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18179708..18179733, -
1.1e-59FFCP PHASE2:Hg19::chr6:135486487..135486491,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:135486487..135486491, +
1.1e-59FFCP PHASE2:Hg19::chr5:146717844..146717861,+#_f1700f6fa279d66bc6746540ac32fc48p@chr5:146717844..146717861, +
1.1e-59FFCP PHASE2:Hg19::chr2:74682916..74682923,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:74682916..74682923, +
1.1e-59FFCP PHASE2:Hg19::chr2:15651894..15651904,-#_f1700f6fa279d66bc6746540ac32fc48p4@NBAS
1.1e-59FFCP PHASE1:Hg19::chr9:74995216..74995247,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74995216..74995247, -
1.1e-59FFCP PHASE2:Hg19::chr4:167944606..167944610,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167944606..167944610, -
1.1e-59FFCP PHASE2:Hg19::chr12:129054695..129054717,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:129054695..129054717, -
1.1e-59FFCP PHASE1:Hg19::chr2:228216535..228216554,+#_f1700f6fa279d66bc6746540ac32fc48p14@MFF
1.1e-59FFCP PHASE2:Hg19::chr8:56618992..56618998,+#_f1700f6fa279d66bc6746540ac32fc48p@chr8:56618992..56618998, +
1.1e-59FFCP PHASE2:Hg19::chr2:228216568..228216578,+#_f1700f6fa279d66bc6746540ac32fc48p15@MFF
1.1e-59FFCP PHASE2:Hg19::chr19:3149800..3149805,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:3149800..3149805, +
1.1e-59FFCP PHASE1:Hg19::chr5:77713534..77713543,+#_f1700f6fa279d66bc6746540ac32fc48p@chr5:77713534..77713543, +
1.1e-59FFCP PHASE2:Hg19::chr2:148278743..148278751,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148278743..148278751, +
1.1e-59FFCP PHASE2:Hg19::chr7:135738522..135738525,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135738522..135738525, -
1.1e-59FFCP PHASE2:Hg19::chr17:40021018..40021028,+#_f1700f6fa279d66bc6746540ac32fc48p@chr17:40021018..40021028, +
1.1e-59FFCP PHASE2:Hg19::chr9:75001932..75001956,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:75001932..75001956, -
1.1e-59FFCP PHASE1:Hg19::chrX:10129292..10129306,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:10129292..10129306, +
1.1e-59FFCP PHASE1:Hg19::chr6:150322254..150322291,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:150322254..150322291, -
1.1e-59FFCP PHASE1:Hg19::chr7:106397597..106397610,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106397597..106397610, +
1.1e-59FFCP PHASE1:Hg19::chr6:31150998..31151005,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:31150998..31151005, -
1.1e-59FFCP PHASE1:Hg19::chr3:153038353..153038371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:153038353..153038371, +
1.1e-59FFCP PHASE2:Hg19::chr4:85688154..85688161,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:85688154..85688161, -
1.1e-59FFCP PHASE1:Hg19::chr11:128154946..128154955,+#_f1700f6fa279d66bc6746540ac32fc48p@chr11:128154946..128154955, +
1.1e-59FFCP PHASE1:Hg19::chr6:135486487..135486491,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:135486487..135486491, +
1.1e-59FFCP PHASE1:Hg19::chr5:146717844..146717861,+#_f1700f6fa279d66bc6746540ac32fc48p@chr5:146717844..146717861, +
1.1e-59FFCP PHASE1:Hg19::chr2:74682916..74682923,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:74682916..74682923, +
1.1e-59FFCP PHASE1:Hg19::chr2:15651894..15651904,-#_f1700f6fa279d66bc6746540ac32fc48p4@NBAS
1.1e-59FFCP PHASE2:Hg19::chr3:169775687..169775690,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:169775687..169775690, -
1.1e-59FFCP PHASE1:Hg19::chr4:167944606..167944610,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167944606..167944610, -
1.1e-59FFCP PHASE2:Hg19::chr6:138023154..138023161,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:138023154..138023161, -
1.1e-59FFCP PHASE2:Hg19::chr5:162742836..162742845,-#_f1700f6fa279d66bc6746540ac32fc48p@chr5:162742836..162742845, -
1.1e-59FFCP PHASE2:Hg19::chr3:111331533..111331540,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:111331533..111331540, -
1.1e-59FFCP PHASE2:Hg19::chr4:182684840..182684848,+#_f1700f6fa279d66bc6746540ac32fc48p@chr4:182684840..182684848, +
1.1e-59FFCP PHASE2:Hg19::chr3:33024873..33024877,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:33024873..33024877, -
1.1e-59FFCP PHASE2:Hg19::chr19:10983266..10983276,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:10983266..10983276, -
1.1e-59FFCP PHASE1:Hg19::chr8:59970765..59970787,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:59970765..59970787, -
1.1e-59FFCP PHASE2:Hg19::chr2:228216837..228216846,+#_f1700f6fa279d66bc6746540ac32fc48p17@MFF
1.1e-59FFCP PHASE1:Hg19::chr20:38442120..38442126,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:38442120..38442126, +
1.1e-59FFCP PHASE1:Hg19::chr2:148278743..148278751,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148278743..148278751, +
1.1e-59FFCP PHASE1:Hg19::chr14:76957782..76957792,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957782..76957792, +
1.1e-59FFCP PHASE1:Hg19::chr7:135738522..135738525,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135738522..135738525, -
1.1e-59FFCP PHASE2:Hg19::chr6:137816618..137816627,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:137816618..137816627, -
1.1e-59FFCP PHASE2:Hg19::chr15:43323772..43323785,-#_f1700f6fa279d66bc6746540ac32fc48p@chr15:43323772..43323785, -
1.1e-59FFCP PHASE2:Hg19::chr13:102271725..102271736,+#_f1700f6fa279d66bc6746540ac32fc48p@chr13:102271725..102271736, +
1.1e-59FFCP PHASE1:Hg19::chr9:75001932..75001956,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:75001932..75001956, -
1.1e-59FFCP PHASE2:Hg19::chr6:484679..484683,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:484679..484683, +
1.1e-59FFCP PHASE1:Hg19::chr19:3149800..3149805,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:3149800..3149805, +
1.1e-59FFCP PHASE2:Hg19::chr7:45954667..45954675,-#_f1700f6fa279d66bc6746540ac32fc48p42@IGFBP3
1.1e-59FFCP PHASE1:Hg19::chr4:85688154..85688161,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:85688154..85688161, -
1.1e-59FFCP PHASE2:Hg19::chr7:106363901..106363915,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106363901..106363915, -
1.1e-59FFCP PHASE1:Hg19::chr13:102271725..102271736,+#_f1700f6fa279d66bc6746540ac32fc48p@chr13:102271725..102271736, +
1.1e-59FFCP PHASE1:Hg19::chr10:120921395..120921406,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:120921395..120921406, -
1.1e-59FFCP PHASE1:Hg19::chr3:169775687..169775690,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:169775687..169775690, -
1.1e-59FFCP PHASE2:Hg19::chr2:65209811..65209818,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:65209811..65209818, +
1.1e-59FFCP PHASE2:Hg19::chr2:148293218..148293252,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148293218..148293252, +
1.1e-59FFCP PHASE2:Hg19::chr1:177159780..177159790,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:177159780..177159790, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957827..76957835,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957827..76957835, +
1.1e-59FFCP PHASE1:Hg19::chr6:138023154..138023161,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:138023154..138023161, -
1.1e-59FFCP PHASE1:Hg19::chr5:162742836..162742845,-#_f1700f6fa279d66bc6746540ac32fc48p@chr5:162742836..162742845, -
1.1e-59FFCP PHASE1:Hg19::chr3:111331533..111331540,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:111331533..111331540, -
1.1e-59FFCP PHASE1:Hg19::chr4:182684840..182684848,+#_f1700f6fa279d66bc6746540ac32fc48p@chr4:182684840..182684848, +
1.1e-59FFCP PHASE1:Hg19::chr19:10983266..10983276,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:10983266..10983276, -
1.1e-59FFCP PHASE2:Hg19::chr8:42248931..42248936,+#_f1700f6fa279d66bc6746540ac32fc48p6@VDAC3

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