FFCP PHASE1:Hg19::chr3:49943537..49943547,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:49943537..49943547,- | |||
|description=CAGE_peak_at_chr3:49943537..49943547,- | |description=CAGE_peak_at_chr3:49943537..49943547,- | ||
|id=chr3:49943537..49943547,- | |id=chr3:49943537..49943547,- | ||
|ontology_enrichment_celltype=CL:0000066!8.92e-27!254;CL:0002076!4.28e-15!43;CL:0000223!5.07e-10!59;CL:0002368!4.94e-09!13;CL:0002159!8.07e-09!13;CL:0000076!1.06e-07!62 | |ontology_enrichment_celltype=CL:0000066!8.92e-27!254;CL:0002076!4.28e-15!43;CL:0000223!5.07e-10!59;CL:0002368!4.94e-09!13;CL:0002159!8.07e-09!13;CL:0000076!1.06e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002328;2.16e-24;3!CL:0002202;9.91e-22;9!CL:0002632;9.91e-22;9!CL:0002368;3.62e-21;13!CL:0002327;5.24e-18;4!CL:0000307;2.32e-11;3!CL:0002159;4.30e-09;14!CL:0000362;2.04e-08;9!CL:0000312;2.46e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002328,2.09e-24,3;CL:0002202,8.73e-22,9;CL:0002632,8.73e-22,9;CL:0002368,2.83e-21,13;CL:0002327,3.49e-18,4;CL:0000068,2.04e-11,3;CL:0000069,2.04e-11,3;CL:0000307,2.04e-11,3;CL:0000377,2.04e-11,3;CL:0002159,4.68e-09,14;CL:0000066,1.33e-08,253;CL:0000362,2.20e-08,9;CL:0002076,2.72e-08,42;CL:0000312,2.39e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000377;2.32e-11;3!UBERON:0001045;6.72e-09;1!UBERON:0006242;6.72e-09;1 | |||
|ontology_enrichment_disease=DOID:305!1.60e-12!106;DOID:0050687!2.01e-07!143 | |ontology_enrichment_disease=DOID:305!1.60e-12!106;DOID:0050687!2.01e-07!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!4.84e-16!169;UBERON:0000925!4.84e-16!169;UBERON:0006595!4.84e-16!169;UBERON:0001007!6.24e-13!155;UBERON:0001555!6.24e-13!155;UBERON:0007026!6.24e-13!155;UBERON:0004921!1.28e-12!129;UBERON:0004185!1.28e-12!129;UBERON:0000065!1.49e-10!53;UBERON:0001004!8.82e-10!72;UBERON:0000077!8.49e-09!130;UBERON:0000072!1.01e-08!46;UBERON:0008947!2.05e-08!38;UBERON:0003258!2.05e-08!38;UBERON:0005409!2.45e-08!35;UBERON:0001041!8.40e-08!98;UBERON:0005153!3.46e-07!37;UBERON:0000062!8.94e-07!511 | |ontology_enrichment_uberon=UBERON:0004119!4.84e-16!169;UBERON:0000925!4.84e-16!169;UBERON:0006595!4.84e-16!169;UBERON:0001007!6.24e-13!155;UBERON:0001555!6.24e-13!155;UBERON:0007026!6.24e-13!155;UBERON:0004921!1.28e-12!129;UBERON:0004185!1.28e-12!129;UBERON:0000065!1.49e-10!53;UBERON:0001004!8.82e-10!72;UBERON:0000077!8.49e-09!130;UBERON:0000072!1.01e-08!46;UBERON:0008947!2.05e-08!38;UBERON:0003258!2.05e-08!38;UBERON:0005409!2.45e-08!35;UBERON:0001041!8.40e-08!98;UBERON:0005153!3.46e-07!37;UBERON:0000062!8.94e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.16e-24;3!UBERON:0002031;2.16e-24;3!UBERON:0001911;5.24e-18;4!UBERON:0002185;7.06e-15;5!UBERON:0001155;7.38e-14;9!UBERON:0007196;5.49e-13;15!UBERON:0001558;5.49e-13;15!UBERON:0000059;2.26e-11;11!UBERON:0000485;8.89e-11;7!UBERON:0000160;1.42e-10;17!UBERON:0001154;6.72e-09;1!UBERON:0001153;6.72e-09;1!UBERON:0009854;6.72e-09;1!UBERON:0005409;3.11e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.09e-24,3;UBERON:0002031,2.09e-24,3;UBERON:0001911,3.49e-18,4;UBERON:0005333,3.49e-18,4;UBERON:0008425,3.49e-18,4;UBERON:0005311,3.49e-18,4;UBERON:0002185,6.91e-15,5;UBERON:0001155,5.55e-14,9;UBERON:0007196,5.10e-13,15;UBERON:0001558,5.10e-13,15;UBERON:0000059,1.79e-11,11;UBERON:0000160,1.25e-10,17;UBERON:0005153,1.54e-09,37;UBERON:0005157,1.75e-09,47;UBERON:0000076,2.32e-09,8;UBERON:0001154,7.85e-09,1;UBERON:0001153,7.85e-09,1;UBERON:0001045,7.85e-09,1;UBERON:0000485,1.71e-08,9;UBERON:0004119,5.63e-08,160;UBERON:0000925,5.63e-08,160;UBERON:0006595,5.63e-08,160;UBERON:0005409,2.68e-07,25;UBERON:0004921,3.11e-07,118 | |||
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| ||
|short_description=p@chr3:49943537..49943547,- | |short_description=p@chr3:49943537..49943547,- | ||
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Latest revision as of 21:57, 29 July 2015
Short description: | p@chr3:49943537..49943547, - |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:49943537..49943547, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 2.09e-24 | 3 |
epithelial cell of tracheobronchial tree | 8.73e-22 | 9 |
epithelial cell of lower respiratory tract | 8.73e-22 | 9 |
respiratory epithelial cell | 2.83e-21 | 13 |
mammary gland epithelial cell | 3.49e-18 | 4 |
duct epithelial cell | 2.04e-11 | 3 |
branched duct epithelial cell | 2.04e-11 | 3 |
tracheal epithelial cell | 2.04e-11 | 3 |
tracheoblast | 2.04e-11 | 3 |
general ecto-epithelial cell | 4.68e-09 | 14 |
epithelial cell | 1.33e-08 | 253 |
epidermal cell | 2.20e-08 | 9 |
endo-epithelial cell | 2.72e-08 | 42 |
keratinocyte | 2.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.09e-24 | 3 |
epithelium of bronchus | 2.09e-24 | 3 |
mammary gland | 3.49e-18 | 4 |
mammary bud | 3.49e-18 | 4 |
mammary ridge | 3.49e-18 | 4 |
mammary placode | 3.49e-18 | 4 |
bronchus | 6.91e-15 | 5 |
colon | 5.55e-14 | 9 |
tracheobronchial tree | 5.10e-13 | 15 |
lower respiratory tract | 5.10e-13 | 15 |
large intestine | 1.79e-11 | 11 |
intestine | 1.25e-10 | 17 |
epithelial bud | 1.54e-09 | 37 |
epithelial fold | 1.75e-09 | 47 |
external ectoderm | 2.32e-09 | 8 |
vermiform appendix | 7.85e-09 | 1 |
caecum | 7.85e-09 | 1 |
midgut | 7.85e-09 | 1 |
simple columnar epithelium | 1.71e-08 | 9 |
endoderm-derived structure | 5.63e-08 | 160 |
endoderm | 5.63e-08 | 160 |
presumptive endoderm | 5.63e-08 | 160 |
gastrointestinal system | 2.68e-07 | 25 |
subdivision of digestive tract | 3.11e-07 | 118 |