Personal tools

UBERON:0003128: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0003128 |name=cranium |namespace= |def="Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anat...")
 
No edit summary
Line 21: Line 21:
|part_of=UBERON:0003129
|part_of=UBERON:0003129
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:18, 15 June 2012

Name:cranium
Definition:"Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
Xrefs:
links:

BILA:0000115
BTO:0001328
EFO:0000831
EHDAA:6029
EHDAA2:0000325
EMAPA:17680
FMA:71325
MA:0000316
MAT:0000340
MIAA:0000340
OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
SCTID:181889008
TAO:0000737
VHOG:0000334
XAO:0003075

ZFA:0000737
Synonyms: "bones of cranium" EXACT [FMA:71325]
"calvarium" RELATED [BTO:0001328]
"cranial skeleton" RELATED []
"epicranial plate" RELATED []
"ossa cranii" EXACT [FMA:71325, FMA:TA]
"skeletal system of head" RELATED []
Comments:The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP].
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004765(skeletal element)
part_of:UBERON:0003129(skull)



Children

part of:UBERON:0001703 (neurocranium),UBERON:0004339 (calvarium),UBERON:0004766 (cranial bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003128 (cranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_c07e35bfbcad3a9ca1580153639f40d6p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_c07e35bfbcad3a9ca1580153639f40d6p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_c07e35bfbcad3a9ca1580153639f40d6p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_c07e35bfbcad3a9ca1580153639f40d6p4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c07e35bfbcad3a9ca1580153639f40d6p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_c07e35bfbcad3a9ca1580153639f40d6p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_c07e35bfbcad3a9ca1580153639f40d6p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_c07e35bfbcad3a9ca1580153639f40d6p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c07e35bfbcad3a9ca1580153639f40d6p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_c07e35bfbcad3a9ca1580153639f40d6p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_c07e35bfbcad3a9ca1580153639f40d6p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_c07e35bfbcad3a9ca1580153639f40d6p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_c07e35bfbcad3a9ca1580153639f40d6p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_c07e35bfbcad3a9ca1580153639f40d6p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_c07e35bfbcad3a9ca1580153639f40d6p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_c07e35bfbcad3a9ca1580153639f40d6p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_c07e35bfbcad3a9ca1580153639f40d6p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Gm1322

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003128&oldid=1832938"