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UBERON:0003128

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Name:cranium
Definition:"Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
Xrefs:
links:

BILA:0000115
BTO:0001328
EFO:0000831
EHDAA:6029
EHDAA2:0000325
EMAPA:17680
FMA:71325
MA:0000316
MAT:0000340
MIAA:0000340
OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
SCTID:181889008
TAO:0000737
VHOG:0000334
XAO:0003075

ZFA:0000737
Synonyms: "bones of cranium" EXACT [FMA:71325]
"calvarium" RELATED [BTO:0001328]
"cranial skeleton" RELATED []
"epicranial plate" RELATED []
"ossa cranii" EXACT [FMA:71325, FMA:TA]
"skeletal system of head" RELATED []
Comments:The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP].
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004765(skeletal element)
part_of:UBERON:0003129(skull)



Children

part of:UBERON:0001703 (neurocranium),UBERON:0004339 (calvarium),UBERON:0004766 (cranial bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003128 (cranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_c07e35bfbcad3a9ca1580153639f40d6p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_c07e35bfbcad3a9ca1580153639f40d6p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_c07e35bfbcad3a9ca1580153639f40d6p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_c07e35bfbcad3a9ca1580153639f40d6p18@Trpm3
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_c07e35bfbcad3a9ca1580153639f40d6p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_c07e35bfbcad3a9ca1580153639f40d6p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_c07e35bfbcad3a9ca1580153639f40d6p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c07e35bfbcad3a9ca1580153639f40d6p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_c07e35bfbcad3a9ca1580153639f40d6p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c07e35bfbcad3a9ca1580153639f40d6p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_c07e35bfbcad3a9ca1580153639f40d6p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_c07e35bfbcad3a9ca1580153639f40d6p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Otof
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_c07e35bfbcad3a9ca1580153639f40d6p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_c07e35bfbcad3a9ca1580153639f40d6p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Strc

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