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{{UBERON
{{UBERON
|id=UBERON:0003296
|alt_id=
|name=gland of diencephalon
|namespace=
|def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
|xref=EHDAA:4475;;EHDAA2:0000395;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653
|is_a=UBERON:0002530;;UBERON:0004121
|synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003296
|is_a=UBERON:0002530 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=gland of diencephalon
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001894
|part_of=UBERON:0001894
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic]
|union_of=
|xref=EHDAA2:0000395;;EHDAA:4475;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653
}}
}}

Latest revision as of 17:39, 12 September 2014

Name:gland of diencephalon
Namespace:FANTOM
Definition:"A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA2:0000395
EHDAA:4475
EMAPA:16646
EMAPA:16897

VHOG:0000653
Synonyms: "between brain gland" EXACT [OBOL:automatic]
"diencephalon gland" EXACT [OBOL:automatic]
"gland of between brain" EXACT [OBOL:automatic]
"gland of interbrain" EXACT [OBOL:automatic]
"gland of mature diencephalon" EXACT [OBOL:automatic]
"interbrain gland" EXACT [OBOL:automatic]
"mature diencephalon gland" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002530(gland),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0001894(diencephalon)



Children

is a:UBERON:0000007 (pituitary gland),UBERON:0001905 (pineal body)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003296 (gland of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.57e-195FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85afp@chr19:7979708..7979734, +
2.57e-195FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85afp@chr19:7979708..7979734, +
1.0e-156FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aeep11@SPOCK1
1.0e-156FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aeep11@SPOCK1
1.5e-156FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262cep@chr12:128210626..128210641, -
1.5e-156FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262cep@chr12:128210626..128210641, -
6.94e-147FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbep@chr19:49519930..49519937, -
6.94e-147FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbep@chr19:49519930..49519937, -
6.94e-147FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979644..7979653, +
6.94e-147FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979644..7979653, +
6.94e-147FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbep1@LHB
6.94e-147FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbep1@LHB
6.94e-147FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979677..7979703, +
6.94e-147FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979677..7979703, +
2.79e-131FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11p@chr1:99693441..99693485, -
2.79e-131FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11p@chr1:99693441..99693485, -
1.07e-130FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51p5@ENST00000513329
1.07e-130FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51p5@ENST00000513329
1.0e-112FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5p3@ENST00000443800
1.0e-112FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5p3@ENST00000443800
1.76e-111FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbcap2@LHX3
1.76e-111FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbcap2@LHX3
8.91e-111FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88bp@chr22:47126639..47126654, +
8.91e-111FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88bp@chr22:47126639..47126654, +
2.76e-110FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93p@chr11:75194071..75194110, -
2.76e-110FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93p@chr4:1233005..1233017, +
2.76e-110FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93p@chr4:1233005..1233017, +
2.76e-110FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93p@chr11:75194071..75194110, -
2.76e-110FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93p17@LRRC49
2.76e-110FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93p17@LRRC49
5.02e-99FFCP PHASE1:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74p@chr12:128210666..128210685, -
5.02e-99FFCP PHASE2:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74p@chr12:128210666..128210685, -
1.38e-98FFCP PHASE1:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88p@chr9:139095116..139095139, +
1.38e-98FFCP PHASE2:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88p@chr9:139095116..139095139, +
1.55e-98FFCP PHASE1:Hg19::chr11:18041244..18041266,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18041244..18041266, -
1.55e-98FFCP PHASE2:Hg19::chr3:4774755..4774765,+#_86c8842de92bb34e78ab840208c7dc62p@chr3:4774755..4774765, +
1.55e-98FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_86c8842de92bb34e78ab840208c7dc62p8@SLC5A7
1.55e-98FFCP PHASE2:Hg19::chr6:22290440..22290455,+#_86c8842de92bb34e78ab840208c7dc62p@chr6:22290440..22290455, +
1.55e-98FFCP PHASE1:Hg19::chr11:84530787..84530803,+#_86c8842de92bb34e78ab840208c7dc62p@chr11:84530787..84530803, +
1.55e-98FFCP PHASE2:Hg19::chr5:135732675..135732680,-#_86c8842de92bb34e78ab840208c7dc62p3@ENST00000514282
1.55e-98FFCP PHASE2:Hg19::chr11:18042584..18042593,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18042584..18042593, -
1.55e-98FFCP PHASE2:Hg19::chr7:9194488..9194491,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:9194488..9194491, -
1.55e-98FFCP PHASE1:Hg19::chr3:130248948..130248959,+#_86c8842de92bb34e78ab840208c7dc62p@chr3:130248948..130248959, +
1.55e-98FFCP PHASE2:Hg19::chr13:78813679..78813681,-#_86c8842de92bb34e78ab840208c7dc62p@chr13:78813679..78813681, -
1.55e-98FFCP PHASE2:Hg19::chr3:54952420..54952425,-#_86c8842de92bb34e78ab840208c7dc62p@chr3:54952420..54952425, -
1.55e-98FFCP PHASE1:Hg19::chr8:135521466..135521470,+#_86c8842de92bb34e78ab840208c7dc62p@chr8:135521466..135521470, +
1.55e-98FFCP PHASE2:Hg19::chr17:61995979..61995990,-#_86c8842de92bb34e78ab840208c7dc62p2@AB591020
1.55e-98FFCP PHASE1:Hg19::chr6:22290492..22290497,+#_86c8842de92bb34e78ab840208c7dc62p@chr6:22290492..22290497, +
1.55e-98FFCP PHASE2:Hg19::chr11:72297712..72297715,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:72297712..72297715, -
1.55e-98FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_86c8842de92bb34e78ab840208c7dc62p@chr12:99734965..99734976, -
1.55e-98FFCP PHASE2:Hg19::chr7:120969099..120969104,+#_86c8842de92bb34e78ab840208c7dc62p3@WNT16
1.55e-98FFCP PHASE1:Hg19::chr2:17185958..17185998,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:17185958..17185998, +
1.55e-98FFCP PHASE2:Hg19::chr6:22287669..22287676,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22287669..22287676, -
1.55e-98FFCP PHASE2:Hg19::chr11:18041206..18041211,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18041206..18041211, -
1.55e-98FFCP PHASE1:Hg19::chr5:119868809..119868839,+#_86c8842de92bb34e78ab840208c7dc62p@chr5:119868809..119868839, +
1.55e-98FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_86c8842de92bb34e78ab840208c7dc62p@chr13:52650530..52650533, -
1.55e-98FFCP PHASE2:Hg19::chr17:74463567..74463574,+#_86c8842de92bb34e78ab840208c7dc62p4@AANAT
1.55e-98FFCP PHASE1:Hg19::chr8:135504337..135504342,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135504337..135504342, -
1.55e-98FFCP PHASE2:Hg19::chr11:18063707..18063720,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18063707..18063720, -
1.55e-98FFCP PHASE2:Hg19::chr17:61995207..61995219,-#_86c8842de92bb34e78ab840208c7dc62p@chr17:61995207..61995219, -
1.55e-98FFCP PHASE1:Hg19::chr2:108602341..108602352,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:108602341..108602352, +
1.55e-98FFCP PHASE1:Hg19::chr6:22287720..22287725,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22287720..22287725, -
1.55e-98FFCP PHASE1:Hg19::chr5:158737729..158737738,-#_86c8842de92bb34e78ab840208c7dc62p@chr5:158737729..158737738, -
1.55e-98FFCP PHASE2:Hg19::chr5:119799576..119799585,+#_86c8842de92bb34e78ab840208c7dc62p10@PRR16
1.55e-98FFCP PHASE2:Hg19::chr2:211830430..211830435,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:211830430..211830435, +
1.55e-98FFCP PHASE2:Hg19::chr1:57975398..57975401,+#_86c8842de92bb34e78ab840208c7dc62p@chr1:57975398..57975401, +
1.55e-98FFCP PHASE2:Hg19::chr7:31003621..31003641,+#_86c8842de92bb34e78ab840208c7dc62p3@GHRHR
1.55e-98FFCP PHASE1:Hg19::chr17:61995906..61995914,-#_86c8842de92bb34e78ab840208c7dc62p6@AB591020
1.55e-98FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_86c8842de92bb34e78ab840208c7dc62p@chr1:99860786..99860791, -
1.55e-98FFCP PHASE1:Hg19::chr4:1188439..1188454,-#_86c8842de92bb34e78ab840208c7dc62p@chr4:1188439..1188454, -
1.55e-98FFCP PHASE1:Hg19::chr3:101038595..101038604,-#_86c8842de92bb34e78ab840208c7dc62p@chr3:101038595..101038604, -
1.55e-98FFCP PHASE1:Hg19::chrX:9528518..9528536,+#_86c8842de92bb34e78ab840208c7dc62p@chrX:9528518..9528536, +
1.55e-98FFCP PHASE1:Hg19::chr11:18067904..18067908,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18067904..18067908, -
1.55e-98FFCP PHASE2:Hg19::chr12:121088121..121088131,+#_86c8842de92bb34e78ab840208c7dc62p11@CABP1
1.55e-98FFCP PHASE1:Hg19::chr16:18066345..18066365,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:18066345..18066365, -
1.55e-98FFCP PHASE1:Hg19::chr12:121088132..121088135,+#_86c8842de92bb34e78ab840208c7dc62p15@CABP1
1.55e-98FFCP PHASE1:Hg19::chr2:25391425..25391439,-#_86c8842de92bb34e78ab840208c7dc62p10@POMC
1.55e-98FFCP PHASE1:Hg19::chr15:55470984..55471009,-#_86c8842de92bb34e78ab840208c7dc62p@chr15:55470984..55471009, -
1.55e-98FFCP PHASE1:Hg19::chr3:154042775..154042780,-#_86c8842de92bb34e78ab840208c7dc62p8@DHX36
1.55e-98FFCP PHASE1:Hg19::chr15:47662877..47662880,-#_86c8842de92bb34e78ab840208c7dc62p@chr15:47662877..47662880, -
1.55e-98FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_86c8842de92bb34e78ab840208c7dc62p4@ENST00000439998
1.55e-98FFCP PHASE1:Hg19::chr12:55422293..55422300,+#_86c8842de92bb34e78ab840208c7dc62p@chr12:55422293..55422300, +
1.55e-98FFCP PHASE1:Hg19::chr16:51174216..51174239,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:51174216..51174239, -
1.55e-98FFCP PHASE2:Hg19::chr16:21049173..21049231,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:21049173..21049231, -
1.55e-98FFCP PHASE1:Hg19::chr2:7497646..7497649,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:7497646..7497649, +
1.55e-98FFCP PHASE1:Hg19::chr2:4224059..4224062,-#_86c8842de92bb34e78ab840208c7dc62p@chr2:4224059..4224062, -
1.55e-98FFCP PHASE2:Hg19::chr4:1188439..1188454,-#_86c8842de92bb34e78ab840208c7dc62p@chr4:1188439..1188454, -
1.55e-98FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_86c8842de92bb34e78ab840208c7dc62p@chr3:107545606..107545631, -
1.55e-98FFCP PHASE2:Hg19::chr2:216447404..216447411,-#_86c8842de92bb34e78ab840208c7dc62p1@ENST00000457625
1.55e-98FFCP PHASE2:Hg19::chrX:9528518..9528536,+#_86c8842de92bb34e78ab840208c7dc62p@chrX:9528518..9528536, +
1.55e-98FFCP PHASE1:Hg19::chr17:61996160..61996176,-#_86c8842de92bb34e78ab840208c7dc62p3@GH1
1.55e-98FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:129084265..129084288, -
1.55e-98FFCP PHASE1:Hg19::chr7:120842768..120842790,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:120842768..120842790, -
1.55e-98FFCP PHASE1:Hg19::chr8:135515989..135515991,+#_86c8842de92bb34e78ab840208c7dc62p@chr8:135515989..135515991, +
1.55e-98FFCP PHASE2:Hg19::chr17:61995480..61995499,-#_86c8842de92bb34e78ab840208c7dc62p@chr17:61995480..61995499, -
1.55e-98FFCP PHASE1:Hg19::chr8:126582844..126582849,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:126582844..126582849, -
1.55e-98FFCP PHASE1:Hg19::chr6:22287815..22287820,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22287815..22287820, -
1.55e-98FFCP PHASE2:Hg19::chr8:135504405..135504410,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135504405..135504410, -
1.55e-98FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:17141934..17141935, +
1.55e-98FFCP PHASE2:Hg19::chr16:50898038..50898042,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:50898038..50898042, -

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