UBERON:0003296: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003296 | |||
|is_a=UBERON:0002530 ;;UBERON:0004121 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=gland of diencephalon | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001894 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=EHDAA2:0000395;;EHDAA:4475;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653 | |||
}} | }} | ||
Latest revision as of 17:39, 12 September 2014
| Name: | gland of diencephalon | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A gland that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"between brain gland" EXACT [OBOL:automatic] "diencephalon gland" EXACT [OBOL:automatic] "gland of between brain" EXACT [OBOL:automatic] "gland of interbrain" EXACT [OBOL:automatic] "gland of mature diencephalon" EXACT [OBOL:automatic] "interbrain gland" EXACT [OBOL:automatic] "mature diencephalon gland" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002530(gland),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001894(diencephalon) |
Children
| is a: | UBERON:0000007 (pituitary gland),UBERON:0001905 (pineal body) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
- 10378-105G9 (pituitary gland, adult, donor10258)
- 11649-122E2
- 11726-123D7
- 11744-123F7
- 1265-44F5 (pituitary gland, embryo E17)
... further results Mouse (Mus musculus)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
- 10378-105G9 (pituitary gland, adult, donor10258)
- 11649-122E2
- 11726-123D7
- 11744-123F7
- 1265-44F5 (pituitary gland, embryo E17)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003296 (gland of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.57e-195 | FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85af | p@chr19:7979708..7979734, + |
| 2.57e-195 | FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85af | p@chr19:7979708..7979734, + |
| 1.0e-156 | FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aee | p11@SPOCK1 |
| 1.0e-156 | FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aee | p11@SPOCK1 |
| 1.5e-156 | FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262ce | p@chr12:128210626..128210641, - |
| 1.5e-156 | FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262ce | p@chr12:128210626..128210641, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979677..7979703, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbe | p@chr19:49519930..49519937, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979644..7979653, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbe | p@chr19:49519930..49519937, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979644..7979653, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbe | p1@LHB |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbe | p1@LHB |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979677..7979703, + |
| 2.79e-131 | FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11 | p@chr1:99693441..99693485, - |
| 2.79e-131 | FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11 | p@chr1:99693441..99693485, - |
| 1.07e-130 | FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51 | p5@ENST00000513329 |
| 1.07e-130 | FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51 | p5@ENST00000513329 |
| 1.0e-112 | FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5 | p3@ENST00000443800 |
| 1.0e-112 | FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5 | p3@ENST00000443800 |
| 1.76e-111 | FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbca | p2@LHX3 |
| 1.76e-111 | FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbca | p2@LHX3 |
| 8.91e-111 | FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88b | p@chr22:47126639..47126654, + |
| 8.91e-111 | FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88b | p@chr22:47126639..47126654, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p17@LRRC49 |
| 2.76e-110 | FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr4:1233005..1233017, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr11:75194071..75194110, - |
| 2.76e-110 | FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr4:1233005..1233017, + |
| 2.76e-110 | FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr11:75194071..75194110, - |
| 2.76e-110 | FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p17@LRRC49 |
| 5.02e-99 | FFCP PHASE1:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74 | p@chr12:128210666..128210685, - |
| 5.02e-99 | FFCP PHASE2:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74 | p@chr12:128210666..128210685, - |
| 1.38e-98 | FFCP PHASE1:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88 | p@chr9:139095116..139095139, + |
| 1.38e-98 | FFCP PHASE2:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88 | p@chr9:139095116..139095139, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61995410..61995414,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:61995410..61995414, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18041199..18041200,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18041199..18041200, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18063669..18063678,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18063669..18063678, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:54952432..54952459,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:54952432..54952459, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:118521917..118521922,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:118521917..118521922, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:18066399..18066411, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:89881337..89881342,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:89881337..89881342, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:99860786..99860791, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:89881348..89881356,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:89881348..89881356, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:6956383..6956390,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:6956383..6956390, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:130248877..130248886,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:130248877..130248886, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:61996018..61996019,-#_86c8842de92bb34e78ab840208c7dc62 | p5@AB591020 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:168250194..168250197,+#_86c8842de92bb34e78ab840208c7dc62 | p3@TBX19 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:49512240..49512248,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr14:49512240..49512248, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:108616342..108616384,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:108616342..108616384, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:146290937..146290942,+#_86c8842de92bb34e78ab840208c7dc62 | p@chrX:146290937..146290942, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:204620238..204620253,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:204620238..204620253, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135522475..135522486,-#_86c8842de92bb34e78ab840208c7dc62 | p16@ZFAT |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:56582028..56582062,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:56582028..56582062, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:17075761..17075773,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:17075761..17075773, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:17930871..17930877,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:17930871..17930877, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:1188439..1188454,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr4:1188439..1188454, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:6328202..6328224,-#_86c8842de92bb34e78ab840208c7dc62 | p1@BC014398 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22290499..22290506,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22290499..22290506, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:107545606..107545631, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:216447404..216447411,-#_86c8842de92bb34e78ab840208c7dc62 | p1@ENST00000457625 |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:9528518..9528536,+#_86c8842de92bb34e78ab840208c7dc62 | p@chrX:9528518..9528536, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:136328601..136328607,-#_86c8842de92bb34e78ab840208c7dc62 | p25@SPOCK1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_86c8842de92bb34e78ab840208c7dc62 | p4@ENST00000439998 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:211830446..211830457,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:211830446..211830457, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:33146637..33146644,-#_86c8842de92bb34e78ab840208c7dc62 | p35@DMD |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:61995371..61995384,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:61995371..61995384, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135504353..135504365,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135504353..135504365, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr19:49519357..49519372,-#_86c8842de92bb34e78ab840208c7dc62 | p1@CU678753 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18041244..18041266,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18041244..18041266, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22287728..22287735,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287728..22287735, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135504405..135504410,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135504405..135504410, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:84530787..84530803,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:84530787..84530803, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:9178561..9178568,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:9178561..9178568, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:56628548..56628553,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:56628548..56628553, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:18580269..18580290,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr10:18580269..18580290, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:129084265..129084288, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135473063..135473075,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135473063..135473075, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:99734965..99734976, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:99860883..99860921,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:99860883..99860921, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:1066886..1066919,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:1066886..1066919, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:87751918..87751928, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:56963107..56963117,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr18:56963107..56963117, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:55422565..55422604,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:55422565..55422604, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61995906..61995914,-#_86c8842de92bb34e78ab840208c7dc62 | p6@AB591020 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:20985690..20985695,-#_86c8842de92bb34e78ab840208c7dc62 | p38@KCNIP4 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:57907030..57907050,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:57907030..57907050, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:52650486..52650491,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:52650486..52650491, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18067959..18067962,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18067959..18067962, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:52650530..52650533, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:87751931..87751947,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:87751931..87751947, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:70178863..70178874,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:70178863..70178874, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:37668094..37668097,+#_86c8842de92bb34e78ab840208c7dc62 | p6@FRMPD1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:241080084..241080093,-#_86c8842de92bb34e78ab840208c7dc62 | p5@OTOS |
| 1.55e-98 | FFCP PHASE2:Hg19::chr19:49547457..49547458,+#_86c8842de92bb34e78ab840208c7dc62 | p2@CGB5 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:18021982..18021985,+#_86c8842de92bb34e78ab840208c7dc62 | p3@MYO15A |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:45782001..45782009,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:45782001..45782009, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:216447425..216447432,-#_86c8842de92bb34e78ab840208c7dc62 | p2@ENST00000457625 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:61996393..61996421,-#_86c8842de92bb34e78ab840208c7dc62 | p4@CSHL1, p4@GH1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:158734173..158734183,+#_86c8842de92bb34e78ab840208c7dc62 | p7@TULP4 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18039672..18039678,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18039672..18039678, - |
