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{{UBERON
{{UBERON
|id=UBERON:0003296
|alt_id=
|name=gland of diencephalon
|namespace=
|def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
|xref=EHDAA2:0000395;;EHDAA:4475;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653
|is_a=UBERON:0002530;;UBERON:0004121
|synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003296
|is_a=UBERON:0002530 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=gland of diencephalon
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001894
|part_of=UBERON:0001894
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic]
|union_of=
|xref=EHDAA2:0000395;;EHDAA:4475;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653
}}
}}

Latest revision as of 17:39, 12 September 2014

Name:gland of diencephalon
Namespace:FANTOM
Definition:"A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA2:0000395
EHDAA:4475
EMAPA:16646
EMAPA:16897

VHOG:0000653
Synonyms: "between brain gland" EXACT [OBOL:automatic]
"diencephalon gland" EXACT [OBOL:automatic]
"gland of between brain" EXACT [OBOL:automatic]
"gland of interbrain" EXACT [OBOL:automatic]
"gland of mature diencephalon" EXACT [OBOL:automatic]
"interbrain gland" EXACT [OBOL:automatic]
"mature diencephalon gland" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002530(gland),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0001894(diencephalon)



Children

is a:UBERON:0000007 (pituitary gland),UBERON:0001905 (pineal body)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003296 (gland of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.57e-195FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85afp@chr19:7979708..7979734, +
2.57e-195FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85afp@chr19:7979708..7979734, +
1.0e-156FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aeep11@SPOCK1
1.0e-156FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aeep11@SPOCK1
1.5e-156FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262cep@chr12:128210626..128210641, -
1.5e-156FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262cep@chr12:128210626..128210641, -
6.94e-147FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbep1@LHB
6.94e-147FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979677..7979703, +
6.94e-147FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979677..7979703, +
6.94e-147FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbep@chr19:49519930..49519937, -
6.94e-147FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979644..7979653, +
6.94e-147FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbep@chr19:49519930..49519937, -
6.94e-147FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979644..7979653, +
6.94e-147FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbep1@LHB
2.79e-131FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11p@chr1:99693441..99693485, -
2.79e-131FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11p@chr1:99693441..99693485, -
1.07e-130FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51p5@ENST00000513329
1.07e-130FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51p5@ENST00000513329
1.0e-112FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5p3@ENST00000443800
1.0e-112FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5p3@ENST00000443800
1.76e-111FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbcap2@LHX3
1.76e-111FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbcap2@LHX3
8.91e-111FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88bp@chr22:47126639..47126654, +
8.91e-111FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88bp@chr22:47126639..47126654, +
2.76e-110FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93p17@LRRC49
2.76e-110FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93p@chr4:1233005..1233017, +
2.76e-110FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93p17@LRRC49
2.76e-110FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93p@chr4:1233005..1233017, +
2.76e-110FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93p@chr11:75194071..75194110, -
2.76e-110FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93p@chr11:75194071..75194110, -
5.02e-99FFCP PHASE2:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74p@chr12:128210666..128210685, -
5.02e-99FFCP PHASE1:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74p@chr12:128210666..128210685, -
1.38e-98FFCP PHASE1:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88p@chr9:139095116..139095139, +
1.38e-98FFCP PHASE2:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88p@chr9:139095116..139095139, +
1.55e-98FFCP PHASE2:Hg19::chr6:22294730..22294743,-#_86c8842de92bb34e78ab840208c7dc62p6@PRL
1.55e-98FFCP PHASE2:Hg19::chr3:192894664..192894677,-#_86c8842de92bb34e78ab840208c7dc62p1@ENST00000414895
1.55e-98FFCP PHASE2:Hg19::chr12:49621658..49621666,+#_86c8842de92bb34e78ab840208c7dc62p21@TUBA1C
1.55e-98FFCP PHASE1:Hg19::chr8:135499228..135499260,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135499228..135499260, -
1.55e-98FFCP PHASE1:Hg19::chr7:31003580..31003589,+#_86c8842de92bb34e78ab840208c7dc62p6@GHRHR
1.55e-98FFCP PHASE2:Hg19::chr1:13820103..13820109,+#_86c8842de92bb34e78ab840208c7dc62p@chr1:13820103..13820109, +
1.55e-98FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_86c8842de92bb34e78ab840208c7dc62p@chr7:9782665..9782674, +
1.55e-98FFCP PHASE1:Hg19::chr11:18039672..18039678,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18039672..18039678, -
1.55e-98FFCP PHASE1:Hg19::chr8:87755845..87755852,-#_86c8842de92bb34e78ab840208c7dc62p6@CNGB3
1.55e-98FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_86c8842de92bb34e78ab840208c7dc62p@chr8:116127086..116127103, +
1.55e-98FFCP PHASE1:Hg19::chr19:7979665..7979675,+#_86c8842de92bb34e78ab840208c7dc62p@chr19:7979665..7979675, +
1.55e-98FFCP PHASE2:Hg19::chr12:56582028..56582062,+#_86c8842de92bb34e78ab840208c7dc62p@chr12:56582028..56582062, +
1.55e-98FFCP PHASE1:Hg19::chr17:61996018..61996019,-#_86c8842de92bb34e78ab840208c7dc62p5@AB591020
1.55e-98FFCP PHASE1:Hg19::chr6:22287619..22287636,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22287619..22287636, -
1.55e-98FFCP PHASE1:Hg19::chr3:192894646..192894653,-#_86c8842de92bb34e78ab840208c7dc62p2@ENST00000414895
1.55e-98FFCP PHASE2:Hg19::chr6:22290447..22290450,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22290447..22290450, -
1.55e-98FFCP PHASE2:Hg19::chr16:18066392..18066397,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:18066392..18066397, -
1.55e-98FFCP PHASE2:Hg19::chr5:135732714..135732721,-#_86c8842de92bb34e78ab840208c7dc62p2@ENST00000514282
1.55e-98FFCP PHASE1:Hg19::chr16:18066399..18066411,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:18066399..18066411, -
1.55e-98FFCP PHASE1:Hg19::chr12:89881337..89881342,-#_86c8842de92bb34e78ab840208c7dc62p@chr12:89881337..89881342, -
1.55e-98FFCP PHASE2:Hg19::chr3:54952432..54952459,-#_86c8842de92bb34e78ab840208c7dc62p@chr3:54952432..54952459, -
1.55e-98FFCP PHASE2:Hg19::chr3:118521917..118521922,-#_86c8842de92bb34e78ab840208c7dc62p@chr3:118521917..118521922, -
1.55e-98FFCP PHASE2:Hg19::chr17:61995995..61996002,-#_86c8842de92bb34e78ab840208c7dc62p3@AB591020
1.55e-98FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135473876..135473885, -
1.55e-98FFCP PHASE1:Hg19::chr3:4774755..4774765,+#_86c8842de92bb34e78ab840208c7dc62p@chr3:4774755..4774765, +
1.55e-98FFCP PHASE1:Hg19::chr2:108604491..108604499,+#_86c8842de92bb34e78ab840208c7dc62p8@SLC5A7
1.55e-98FFCP PHASE2:Hg19::chr3:130248877..130248886,+#_86c8842de92bb34e78ab840208c7dc62p@chr3:130248877..130248886, +
1.55e-98FFCP PHASE1:Hg19::chr17:61995371..61995384,+#_86c8842de92bb34e78ab840208c7dc62p@chr17:61995371..61995384, +
1.55e-98FFCP PHASE2:Hg19::chr11:18041194..18041197,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18041194..18041197, -
1.55e-98FFCP PHASE1:Hg19::chr14:57197193..57197194,-#_86c8842de92bb34e78ab840208c7dc62p1@ENST00000554597
1.55e-98FFCP PHASE2:Hg19::chr8:135520309..135520324,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135520309..135520324, -
1.55e-98FFCP PHASE2:Hg19::chr1:168250194..168250197,+#_86c8842de92bb34e78ab840208c7dc62p3@TBX19
1.55e-98FFCP PHASE2:Hg19::chr7:32468385..32468392,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:32468385..32468392, -
1.55e-98FFCP PHASE2:Hg19::chr2:108616342..108616384,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:108616342..108616384, +
1.55e-98FFCP PHASE2:Hg19::chr9:135964996..135965001,+#_86c8842de92bb34e78ab840208c7dc62p@chr9:135964996..135965001, +
1.55e-98FFCP PHASE1:Hg19::chr3:54952420..54952425,-#_86c8842de92bb34e78ab840208c7dc62p@chr3:54952420..54952425, -
1.55e-98FFCP PHASE1:Hg19::chr6:22290492..22290497,+#_86c8842de92bb34e78ab840208c7dc62p@chr6:22290492..22290497, +
1.55e-98FFCP PHASE1:Hg19::chr16:17930871..17930877,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:17930871..17930877, -
1.55e-98FFCP PHASE2:Hg19::chr1:204620238..204620253,+#_86c8842de92bb34e78ab840208c7dc62p@chr1:204620238..204620253, +
1.55e-98FFCP PHASE2:Hg19::chr17:74463608..74463612,+#_86c8842de92bb34e78ab840208c7dc62p5@AANAT
1.55e-98FFCP PHASE2:Hg19::chr2:17075761..17075773,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:17075761..17075773, +
1.55e-98FFCP PHASE2:Hg19::chr8:135472861..135472868,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135472861..135472868, -
1.55e-98FFCP PHASE1:Hg19::chr2:211830430..211830435,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:211830430..211830435, +
1.55e-98FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_86c8842de92bb34e78ab840208c7dc62p32@DMD
1.55e-98FFCP PHASE2:Hg19::chr17:61995220..61995244,-#_86c8842de92bb34e78ab840208c7dc62p@chr17:61995220..61995244, -
1.55e-98FFCP PHASE1:Hg19::chr1:57975398..57975401,+#_86c8842de92bb34e78ab840208c7dc62p@chr1:57975398..57975401, +
1.55e-98FFCP PHASE2:Hg19::chr2:211830446..211830457,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:211830446..211830457, +
1.55e-98FFCP PHASE2:Hg19::chr7:31006649..31006651,+#_86c8842de92bb34e78ab840208c7dc62p@chr7:31006649..31006651, +
1.55e-98FFCP PHASE1:Hg19::chr9:92310419..92310432,+#_86c8842de92bb34e78ab840208c7dc62p@chr9:92310419..92310432, +
1.55e-98FFCP PHASE1:Hg19::chr8:135521466..135521470,+#_86c8842de92bb34e78ab840208c7dc62p@chr8:135521466..135521470, +
1.55e-98FFCP PHASE1:Hg19::chr11:18042584..18042593,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18042584..18042593, -
1.55e-98FFCP PHASE2:Hg19::chr6:22287695..22287700,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22287695..22287700, -
1.55e-98FFCP PHASE1:Hg19::chr19:2608406..2608413,-#_86c8842de92bb34e78ab840208c7dc62p@chr19:2608406..2608413, -
1.55e-98FFCP PHASE2:Hg19::chr12:81859007..81859036,+#_86c8842de92bb34e78ab840208c7dc62p@chr12:81859007..81859036, +
1.55e-98FFCP PHASE2:Hg19::chr13:56628524..56628547,-#_86c8842de92bb34e78ab840208c7dc62p@chr13:56628524..56628547, -
1.55e-98FFCP PHASE2:Hg19::chr12:121088132..121088135,+#_86c8842de92bb34e78ab840208c7dc62p15@CABP1
1.55e-98FFCP PHASE1:Hg19::chr13:56628548..56628553,-#_86c8842de92bb34e78ab840208c7dc62p@chr13:56628548..56628553, -
1.55e-98FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_86c8842de92bb34e78ab840208c7dc62p@chr12:60826120..60826127, +
1.55e-98FFCP PHASE2:Hg19::chr12:6954834..6954841,+#_86c8842de92bb34e78ab840208c7dc62p9@GNB3
1.55e-98FFCP PHASE1:Hg19::chr5:119868809..119868839,+#_86c8842de92bb34e78ab840208c7dc62p@chr5:119868809..119868839, +
1.55e-98FFCP PHASE2:Hg19::chrX:38147077..38147085,-#_86c8842de92bb34e78ab840208c7dc62p@chrX:38147077..38147085, -
1.55e-98FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_86c8842de92bb34e78ab840208c7dc62p11@SRRM3
1.55e-98FFCP PHASE1:Hg19::chr11:74951707..74951719,+#_86c8842de92bb34e78ab840208c7dc62p9@LOC100507050
1.55e-98FFCP PHASE2:Hg19::chr6:33087873..33087886,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:33087873..33087886, -
1.55e-98FFCP PHASE1:Hg19::chr1:99860786..99860791,-#_86c8842de92bb34e78ab840208c7dc62p@chr1:99860786..99860791, -
1.55e-98FFCP PHASE1:Hg19::chr8:135504337..135504342,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135504337..135504342, -

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