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UBERON:0005728

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Name:extraembryonic mesoderm
Namespace:FANTOM
Definition:"." [1]
Xrefs:
links:

EHDAA2:0000474

VHOG:0000616
Synonyms: "extra-embryonic mesoderm" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue),UBERON:0007524(dense mesenchyme tissue)
develops_from:UBERON:0003081(lateral plate mesoderm),UBERON:0008780(inner cell mass derived epiblast)
part_of:UBERON:0016887(entire extraembryonic component)



Children

develops from:UBERON:0007806 (connecting stalk)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005728 (extraembryonic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr6:138023078..138023089,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:138023078..138023089, -
1.1e-59FFCP PHASE1:Hg19::chr8:38216859..38216889,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:38216859..38216889, -
1.1e-59FFCP PHASE1:Hg19::chr10:109197952..109197957,+#_f1700f6fa279d66bc6746540ac32fc48p@chr10:109197952..109197957, +
1.1e-59FFCP PHASE2:Hg19::chr15:43323789..43323811,-#_f1700f6fa279d66bc6746540ac32fc48p@chr15:43323789..43323811, -
1.1e-59FFCP PHASE1:Hg19::chr17:1985278..1985290,-#_f1700f6fa279d66bc6746540ac32fc48p@chr17:1985278..1985290, -
1.1e-59FFCP PHASE1:Hg19::chr12:130530197..130530209,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:130530197..130530209, -
1.1e-59FFCP PHASE2:Hg19::chr6:484706..484722,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:484706..484722, +
1.1e-59FFCP PHASE2:Hg19::chr4:167982726..167982736,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167982726..167982736, -
1.1e-59FFCP PHASE2:Hg19::chr8:59790413..59790418,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:59790413..59790418, -
1.1e-59FFCP PHASE2:Hg19::chr10:61574767..61574776,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:61574767..61574776, -
1.1e-59FFCP PHASE2:Hg19::chrX:146004822..146004839,-#_f1700f6fa279d66bc6746540ac32fc48p@chrX:146004822..146004839, -
1.1e-59FFCP PHASE1:Hg19::chr4:167957459..167957470,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167957459..167957470, -
1.1e-59FFCP PHASE2:Hg19::chr6:135486309..135486312,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:135486309..135486312, +
1.1e-59FFCP PHASE2:Hg19::chr2:148296759..148296767,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148296759..148296767, +
1.1e-59FFCP PHASE2:Hg19::chr10:120921294..120921306,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:120921294..120921306, -
1.1e-59FFCP PHASE1:Hg19::chr9:94933452..94933457,+#_f1700f6fa279d66bc6746540ac32fc48p@chr9:94933452..94933457, +
1.1e-59FFCP PHASE1:Hg19::chr2:148296759..148296767,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148296759..148296767, +
1.1e-59FFCP PHASE2:Hg19::chr12:24889813..24889821,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:24889813..24889821, -
1.1e-59FFCP PHASE2:Hg19::chr7:45954712..45954720,-#_f1700f6fa279d66bc6746540ac32fc48p41@IGFBP3
1.1e-59FFCP PHASE2:Hg19::chr12:77198556..77198565,+#_f1700f6fa279d66bc6746540ac32fc48p@chr12:77198556..77198565, +
1.1e-59FFCP PHASE1:Hg19::chr10:61574724..61574737,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:61574724..61574737, -
1.1e-59FFCP PHASE1:Hg19::chr19:18603318..18603327,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:18603318..18603327, -
1.1e-59FFCP PHASE1:Hg19::chr4:167791926..167791930,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167791926..167791930, -
1.1e-59FFCP PHASE2:Hg19::chr1:168204286..168204299,+#_f1700f6fa279d66bc6746540ac32fc48p@chr1:168204286..168204299, +
1.1e-59FFCP PHASE2:Hg19::chr19:53511768..53511784,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:53511768..53511784, -
1.1e-59FFCP PHASE2:Hg19::chr14:76017349..76017357,-#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76017349..76017357, -
1.1e-59FFCP PHASE2:Hg19::chr7:135705408..135705462,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135705408..135705462, +
1.1e-59FFCP PHASE2:Hg19::chr21:18180040..18180058,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18180040..18180058, -
1.1e-59FFCP PHASE1:Hg19::chr1:168204286..168204299,+#_f1700f6fa279d66bc6746540ac32fc48p@chr1:168204286..168204299, +
1.1e-59FFCP PHASE1:Hg19::chr19:53511768..53511784,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:53511768..53511784, -
1.1e-59FFCP PHASE1:Hg19::chr21:18180040..18180058,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18180040..18180058, -
1.1e-59FFCP PHASE2:Hg19::chr6:88854777..88854802,-#_f1700f6fa279d66bc6746540ac32fc48p16@CNR1
1.1e-59FFCP PHASE2:Hg19::chr3:45926373..45926388,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:45926373..45926388, -
1.1e-59FFCP PHASE2:Hg19::chr19:18603318..18603327,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:18603318..18603327, -
1.1e-59FFCP PHASE1:Hg19::chr2:228216588..228216609,+#_f1700f6fa279d66bc6746540ac32fc48p10@MFF
1.1e-59FFCP PHASE1:Hg19::chr20:22771662..22771675,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:22771662..22771675, +
1.1e-59FFCP PHASE2:Hg19::chr19:49488858..49488869,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:49488858..49488869, -
1.1e-59FFCP PHASE1:Hg19::chr1:234631379..234631392,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:234631379..234631392, -
1.1e-59FFCP PHASE1:Hg19::chr9:74995205..74995211,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74995205..74995211, -
1.1e-59FFCP PHASE1:Hg19::chr19:49488858..49488869,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:49488858..49488869, -
1.1e-59FFCP PHASE1:Hg19::chr10:111805643..111805655,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:111805643..111805655, -
1.1e-59FFCP PHASE2:Hg19::chr3:111311854..111311862,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:111311854..111311862, -
1.1e-59FFCP PHASE2:Hg19::chr10:15035430..15035449,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:15035430..15035449, -
1.1e-59FFCP PHASE2:Hg19::chr3:195306394..195306429,-#_f1700f6fa279d66bc6746540ac32fc48p5@APOD
1.1e-59FFCP PHASE1:Hg19::chr3:111311854..111311862,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:111311854..111311862, -
1.1e-59FFCP PHASE1:Hg19::chr10:30336924..30336935,-#_f1700f6fa279d66bc6746540ac32fc48p15@KIAA1462
1.1e-59FFCP PHASE2:Hg19::chrX:10129363..10129369,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:10129363..10129369, +
1.1e-59FFCP PHASE1:Hg19::chr3:195306394..195306429,-#_f1700f6fa279d66bc6746540ac32fc48p5@APOD
1.1e-59FFCP PHASE2:Hg19::chr1:234631379..234631392,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:234631379..234631392, -
1.1e-59FFCP PHASE1:Hg19::chr1:146746588..146746604,+#_f1700f6fa279d66bc6746540ac32fc48p5@CHD1L
1.1e-59FFCP PHASE2:Hg19::chr7:106397647..106397655,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106397647..106397655, +
1.1e-59FFCP PHASE1:Hg19::chr19:42682291..42682301,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:42682291..42682301, -
1.1e-59FFCP PHASE1:Hg19::chr6:491208..491217,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:491208..491217, -
1.1e-59FFCP PHASE1:Hg19::chr3:45926401..45926410,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:45926401..45926410, -
1.1e-59FFCP PHASE2:Hg19::chr4:167951900..167951907,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167951900..167951907, -
1.1e-59FFCP PHASE2:Hg19::chr3:189266272..189266296,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:189266272..189266296, -
1.1e-59FFCP PHASE1:Hg19::chr15:43323772..43323785,-#_f1700f6fa279d66bc6746540ac32fc48p@chr15:43323772..43323785, -
1.1e-59FFCP PHASE1:Hg19::chr10:15035404..15035424,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:15035404..15035424, -
1.1e-59FFCP PHASE2:Hg19::chr6:149464325..149464336,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:149464325..149464336, -
1.1e-59FFCP PHASE2:Hg19::chr2:228216610..228216617,+#_f1700f6fa279d66bc6746540ac32fc48p18@MFF
1.1e-59FFCP PHASE1:Hg19::chr3:189266272..189266296,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:189266272..189266296, -
1.1e-59FFCP PHASE2:Hg19::chr1:146746588..146746604,+#_f1700f6fa279d66bc6746540ac32fc48p5@CHD1L
1.1e-59FFCP PHASE2:Hg19::chr4:36393818..36393829,-#_f1700f6fa279d66bc6746540ac32fc48p2@ENST00000504344
1.1e-59FFCP PHASE2:Hg19::chr19:42682291..42682301,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:42682291..42682301, -
1.1e-59FFCP PHASE1:Hg19::chr7:142250880..142250889,-#_f1700f6fa279d66bc6746540ac32fc48p4@AF430683, p4@AF430684, p4@AF430685
1.1e-59FFCP PHASE1:Hg19::chr4:167938808..167938815,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167938808..167938815, -
1.1e-59FFCP PHASE2:Hg19::chr2:148282641..148282654,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148282641..148282654, +
1.1e-59FFCP PHASE2:Hg19::chr14:76957775..76957781,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957775..76957781, +
1.1e-59FFCP PHASE1:Hg19::chr2:148282641..148282654,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148282641..148282654, +
1.1e-59FFCP PHASE1:Hg19::chr14:76957827..76957835,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957827..76957835, +
1.1e-59FFCP PHASE2:Hg19::chr8:38216859..38216889,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:38216859..38216889, -
1.1e-59FFCP PHASE1:Hg19::chr7:106363986..106363994,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106363986..106363994, -
1.1e-59FFCP PHASE2:Hg19::chr20:22771722..22771733,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:22771722..22771733, +
1.1e-59FFCP PHASE1:Hg19::chr7:135735084..135735112,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135735084..135735112, +
1.1e-59FFCP PHASE2:Hg19::chr2:53245239..53245255,-#_f1700f6fa279d66bc6746540ac32fc48p@chr2:53245239..53245255, -
1.1e-59FFCP PHASE1:Hg19::chr9:74997054..74997058,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74997054..74997058, -
1.1e-59FFCP PHASE2:Hg19::chr3:180050773..180050786,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:180050773..180050786, +
1.1e-59FFCP PHASE2:Hg19::chr21:18170731..18170736,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18170731..18170736, -
1.1e-59FFCP PHASE1:Hg19::chr2:53245239..53245255,-#_f1700f6fa279d66bc6746540ac32fc48p@chr2:53245239..53245255, -
1.1e-59FFCP PHASE2:Hg19::chr11:128154946..128154955,+#_f1700f6fa279d66bc6746540ac32fc48p@chr11:128154946..128154955, +
1.1e-59FFCP PHASE2:Hg19::chr9:74986248..74986275,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74986248..74986275, -
1.1e-59FFCP PHASE1:Hg19::chr3:180050773..180050786,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:180050773..180050786, +
1.1e-59FFCP PHASE1:Hg19::chr21:18170731..18170736,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18170731..18170736, -
1.1e-59FFCP PHASE2:Hg19::chr17:1985278..1985290,-#_f1700f6fa279d66bc6746540ac32fc48p@chr17:1985278..1985290, -
1.1e-59FFCP PHASE1:Hg19::chr7:17543537..17543548,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:17543537..17543548, -
1.1e-59FFCP PHASE2:Hg19::chr4:167983163..167983209,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167983163..167983209, -
1.1e-59FFCP PHASE1:Hg19::chr19:40074306..40074328,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:40074306..40074328, +
1.1e-59FFCP PHASE2:Hg19::chr10:120921395..120921406,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:120921395..120921406, -
1.1e-59FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:87324164..87324175, +
1.1e-59FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:149490934..149490939, -
1.1e-59FFCP PHASE2:Hg19::chr6:42362820..42362827,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:42362820..42362827, -
1.1e-59FFCP PHASE2:Hg19::chr4:167932279..167932291,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167932279..167932291, -
1.1e-59FFCP PHASE2:Hg19::chr3:119281371..119281382,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119281371..119281382, -
1.1e-59FFCP PHASE1:Hg19::chr3:119281371..119281382,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119281371..119281382, -

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