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CL:0000213

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Name:lining cell
Namespace:FANTOM
Definition:"A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [JB:jb]
Synonyms: "boundary cell" EXACT []


Ontology association

Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.



link to ontology dataset


data

Parents

is_a:CL:0000215(barrier cell)



Children


is a:CL:0000077 (mesothelial cell),CL:0000115 (endothelial cell),CL:0000214 (synovial cell)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens) Mouse (Mus musculus)



Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with CL:0000213 (lining cell), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

P-valueFFCPShort description
9.38e-90FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_072930dc9969cd3fef8b3e480eb8d3b5p@chr6:3753188..3753192, -
9.38e-90FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_072930dc9969cd3fef8b3e480eb8d3b5p@chr6:3753188..3753192, -
3.07e-86FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:39513150..39513152, +
3.07e-86FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:53111093..53111095, +
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:163794592..163794593, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:34798555..34798562, +
3.07e-86FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:107196799..107196814, +
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:88237840..88237851, -
3.07e-86FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:114422970..114422985, -
3.07e-86FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:47491114..47491123, +
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_5b0c75943c8b43fa20ca5af38a0f0d0e+, p@chr8:87745380..87745385
3.07e-86FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:76329688..76329692, -
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr14:101778294..101778296, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:107196799..107196814, +
3.07e-86FFCP PHASE2:Mm9::chr9:116223548..116223551,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:116223548..116223551, +
3.07e-86FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr7:52781901..52781904, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr11:48685851..48685860,-#_5b0c75943c8b43fa20ca5af38a0f0d0e-, p@chr11:48685851..48685860
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:90508949..90508955, -
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr13:96429602..96429605,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:93499468..93499494, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093764..35093773,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep4@Gm4262
3.07e-86FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr8:89310639..89310641,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr4:137487112..137487117,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:124112234..124112240, +
3.07e-86FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:5125608..5125613, +
3.07e-86FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:75375903..75375931, +
3.07e-86FFCP PHASE2:Mm9::chr16:85547242..85547252,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr16:85547242..85547252, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_5b0c75943c8b43fa20ca5af38a0f0d0e-, p@chr9:42915185..42915192
3.07e-86FFCP PHASE2:Mm9::chr10:21389022..21389032,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:21389022..21389032, +
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:133323630..133323631, +
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35106363..35106372, -
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr16:28911901..28911906, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:100000226..100000230, +
3.07e-86FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113554186..113554192, +
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr18:5125608..5125613,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:5125608..5125613, +
3.07e-86FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:119254092..119254100, -
3.07e-86FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_5b0c75943c8b43fa20ca5af38a0f0d0e+, p@chr15:82207617..82207621
3.07e-86FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:93819538..93819549, +
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35106363..35106372, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:86691503..86691504, -
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:86713876..86713879, +
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:114123814..114123821, -
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:34796428..34796430, -
3.07e-86FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:90508949..90508955, -
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr4:141645056..141645068, +
3.07e-86FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:88669906..88669914, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr12:81955014..81955018,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:81955014..81955018, +
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:32912678..32912687, +
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chrX:166418658..166418683,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr3:104857794..104857802,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr3:104857794..104857802, -
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr8:3311867..3311873,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:3311867..3311873, +
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113550715..113550722, -
3.07e-86FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_5b0c75943c8b43fa20ca5af38a0f0d0e+, p@chr10:93819538..93819549
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:76329688..76329692, -
3.07e-86FFCP PHASE1:Mm9::chr16:30944451..30944485,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr16:30944451..30944485, +
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr1:138241693..138241697,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_5b0c75943c8b43fa20ca5af38a0f0d0e-, p@chr15:32178407..32178408