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CL:0000084

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Name:T cell
Namespace:FANTOM
Definition:"A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149]
Xrefs:
links:

BTO:0000782

FMA:62870
Synonyms: "immature T cell" RELATED []
"mature T cell" RELATED []
"T lymphocyte" EXACT []
"T-cell" EXACT []
"T-lymphocyte" EXACT []
Alt_id: CL:0000804
CL:0000812


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000542(lymphocyte)
disjoint_from:CL:0000623(natural killer cell),CL:0000945(lymphocyte of B lineage)
develops_from:CL:0000827(pro-T cell)



Children


is a:CL:0000789 (alpha-beta T cell),CL:0000798 (gamma-delta T cell),CL:0002419 (mature T cell),CL:0002420 (immature T cell),FF:10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL),FF:10795-110I3 (anaplastic large cell lymphoma cell line:Ki-JK)
derives from:FF:0101014 (Mo-T cell sample),FF:0102504 (T-lymphoblastic leukemia cell line sample),FF:0103212 (T-lymphoma cell line sample),FF:0103505 (T-cell chronic lymphocytic leukemia cell sample),FF:0300104 (EBF KO HPCs induced to T cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000084 (T cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.9e-89FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_3e5373ddbf2696f8d42b906640f28145p@chr5:35859622..35859626, +
2.9e-89FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_3e5373ddbf2696f8d42b906640f28145p@chr5:35859622..35859626, +
1.02e-73FFCP PHASE1:Mm9::chr4:63522330..63522352,-#_f5417ed8f8a66e957675c1a398b68235p4@Tnfsf8
1.02e-73FFCP PHASE2:Mm9::chr4:63522330..63522352,-#_f5417ed8f8a66e957675c1a398b68235p4@Tnfsf8
1.33e-72FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_bb2a0505edfed876e1834016a7cabc63p@chr2:87053288..87053295, -
1.33e-72FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_bb2a0505edfed876e1834016a7cabc63p@chr2:87053288..87053295, -
1.48e-71FFCP PHASE1:Hg19::chr17:80085772..80085810,-#_adce0fdab6c67047cd6e093091928973p@chr17:80085772..80085810, -
1.48e-71FFCP PHASE2:Hg19::chr17:80085772..80085810,-#_adce0fdab6c67047cd6e093091928973p@chr17:80085772..80085810, -
6.78e-71FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_40d0b8a48eb47945afa2246caac5638dp@chr19:10869146..10869168, -
6.78e-71FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_40d0b8a48eb47945afa2246caac5638dp1@uc007tsm.1
6.78e-71FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_40d0b8a48eb47945afa2246caac5638dp1@ENSMUST00000103733
6.78e-71FFCP PHASE1:Mm9::chr11:11590836..11590851,+#_40d0b8a48eb47945afa2246caac5638dp@chr11:11590836..11590851, +
6.78e-71FFCP PHASE2:Mm9::chr11:11590836..11590851,+#_40d0b8a48eb47945afa2246caac5638dp@chr11:11590836..11590851, +
6.78e-71FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_40d0b8a48eb47945afa2246caac5638dp3@Tnfrsf25
6.78e-71FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_40d0b8a48eb47945afa2246caac5638dp@chr4:32339511..32339518, +
6.78e-71FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_40d0b8a48eb47945afa2246caac5638d-, p@chr11:99015330..99015341
6.78e-71FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_40d0b8a48eb47945afa2246caac5638dp@chr6:48637679..48637692, +
6.78e-71FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_40d0b8a48eb47945afa2246caac5638dp@chr6:48637679..48637692, +
6.78e-71FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_40d0b8a48eb47945afa2246caac5638dp@chr11:99015330..99015341, -
6.78e-71FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_40d0b8a48eb47945afa2246caac5638dp3@Tnfrsf25
6.78e-71FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_40d0b8a48eb47945afa2246caac5638dp@chr4:32339511..32339518, +
6.78e-71FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_40d0b8a48eb47945afa2246caac5638dp1@uc007tsm.1
6.78e-71FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_40d0b8a48eb47945afa2246caac5638dp1@ENSMUST00000103733
6.78e-71FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_40d0b8a48eb47945afa2246caac5638dp@chr19:10869146..10869168, -
2.06e-70FFCP PHASE2:Hg19::chr11:118186681..118186704,-#_27efe70ff0be6e615a491ac20bb2033fp1@CU690625
2.06e-70FFCP PHASE1:Hg19::chr11:118186681..118186704,-#_27efe70ff0be6e615a491ac20bb2033fp1@CU690625
1.31e-69FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_4666695ebfce438a5d0fee2893fccb6bp10@HNRPLL
1.31e-69FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_4666695ebfce438a5d0fee2893fccb6bp10@HNRPLL
6.71e-69FFCP PHASE1:Hg19::chr17:29637535..29637559,+#_25028c5d340b78a62633755d70174485p@chr17:29637535..29637559, +
6.71e-69FFCP PHASE2:Hg19::chr17:29637535..29637559,+#_25028c5d340b78a62633755d70174485p@chr17:29637535..29637559, +
7.62e-69FFCP PHASE1:Mm9::chr4:63521957..63521980,-#_0aa650052ccb379c5e091619ea0a58e2p@chr4:63521957..63521980, -
7.62e-69FFCP PHASE2:Mm9::chr4:63521957..63521980,-#_0aa650052ccb379c5e091619ea0a58e2p@chr4:63521957..63521980, -
2.06e-68FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_71447f59f395d1384667cd523bcf8d17-, p@chr15:89179440..89179457
2.06e-68FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_71447f59f395d1384667cd523bcf8d17p@chr15:89179440..89179457, -
2.88e-67FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_b20c926156cbd2218ba9409ef092ec56p@chr5:35854487..35854499, -
2.88e-67FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_b20c926156cbd2218ba9409ef092ec56p@chr5:35854487..35854499, -
6.74e-66FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_ac14bd5aa349d761172bcbf2b304f24fp@chr4:32335511..32335532, +
6.74e-66FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_ac14bd5aa349d761172bcbf2b304f24fp@chr4:32335511..32335532, +
9.47e-66FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_cd57c4c18eddf90ca098e7890e77769fp@chr5:35854779..35854826, +
9.47e-66FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_cd57c4c18eddf90ca098e7890e77769fp@chr5:35854779..35854826, +
1.04e-65FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_6961082ee5c562330b6674e9445f3168-, p@chr4:103551892..103551903
1.04e-65FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_6961082ee5c562330b6674e9445f3168p@chr4:103551892..103551903, -
3.53e-65FFCP PHASE1:Hg19::chr16:3117688..3117736,+#_e93d788317a14d62c3a719b31a87fa0fp7@IL32
3.53e-65FFCP PHASE2:Hg19::chr16:3117688..3117736,+#_e93d788317a14d62c3a719b31a87fa0fp7@IL32
7.34e-65FFCP PHASE1:Hg19::chr1:90075464..90075470,-#_c4c3c644da1fe69e145c8b9ab54084b4p@chr1:90075464..90075470, -
7.34e-65FFCP PHASE2:Hg19::chr1:90075464..90075470,-#_c4c3c644da1fe69e145c8b9ab54084b4-, p@chr1:90075464..90075470
1.94e-64FFCP PHASE1:Mm9::chr6:129225479..129225509,+#_470800bd27dee3af7ac5d6353664b0b6p@chr6:129225479..129225509, +
1.94e-64FFCP PHASE2:Mm9::chr6:129225479..129225509,+#_470800bd27dee3af7ac5d6353664b0b6p@chr6:129225479..129225509, +
3.0e-64FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_77ad1a116852b12dc1a5bf98e675a7e0p1@GTSCR1
3.0e-64FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_77ad1a116852b12dc1a5bf98e675a7e0p1@GTSCR1
3.36e-64FFCP PHASE1:Mm9::chr4:63522312..63522327,-#_9e420efd5e6dec154445d4ee499b445cp3@Tnfsf8
3.36e-64FFCP PHASE2:Mm9::chr4:63522312..63522327,-#_9e420efd5e6dec154445d4ee499b445cp3@Tnfsf8
3.94e-64FFCP PHASE2:Hg19::chr1:32716843..32716848,+#_3793bab7eb1f1220e94adeb733817998p6@LCK
3.94e-64FFCP PHASE1:Hg19::chr1:32716843..32716848,+#_3793bab7eb1f1220e94adeb733817998p6@LCK
4.15e-64FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_22a862300059ad214fc339272ae5044dp@chr8:84082784..84082795, +
4.15e-64FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_22a862300059ad214fc339272ae5044dp@chr12:74704873..74704900, +
4.15e-64FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_22a862300059ad214fc339272ae5044dp@chr5:123440486..123440504, -
4.15e-64FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_22a862300059ad214fc339272ae5044dp1@ENSMUST00000103714
4.15e-64FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_22a862300059ad214fc339272ae5044dp@chr14:56207154..56207165, -
4.15e-64FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_22a862300059ad214fc339272ae5044dp@chr7:31935025..31935037, +
4.15e-64FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_22a862300059ad214fc339272ae5044dp@chr12:74704873..74704900, +
4.15e-64FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_22a862300059ad214fc339272ae5044dp@chr8:84082784..84082795, +
4.15e-64FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_22a862300059ad214fc339272ae5044dp@chr5:123440486..123440504, -
4.15e-64FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_22a862300059ad214fc339272ae5044dp@chr7:31935025..31935037, +
4.15e-64FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_22a862300059ad214fc339272ae5044dp1@ENSMUST00000103714
4.15e-64FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_22a862300059ad214fc339272ae5044d-, p@chr14:56207154..56207165
4.17e-64FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_99d53a24ee9b894ec2a8af68fd29aad7p@chr5:35856882..35856909, -
4.17e-64FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_99d53a24ee9b894ec2a8af68fd29aad7p@chr5:35856882..35856909, -
4.91e-64FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_766fdfbe19620f2ec017494642b4e5e2p@chr5:123440767..123440778, +
4.91e-64FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_766fdfbe19620f2ec017494642b4e5e2p@chr5:123440767..123440778, +
4.91e-64FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_766fdfbe19620f2ec017494642b4e5e2+, p@chr14:54838649..54838660
4.91e-64FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_766fdfbe19620f2ec017494642b4e5e2p@chr4:32422919..32422935, +
4.91e-64FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_766fdfbe19620f2ec017494642b4e5e2p@chr14:54838649..54838660, +
4.91e-64FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_766fdfbe19620f2ec017494642b4e5e2p@chr4:32422919..32422935, +
5.81e-64FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_24afa4d0e415097e0c7a89e7980771b1p@chr15:27786221..27786240, -
5.81e-64FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_24afa4d0e415097e0c7a89e7980771b1p@chr15:27786221..27786240, -
5.87e-64FFCP PHASE2:Hg19::chr2:98330009..98330020,+#_30f32253b7202840cab0e438ea1b83c3p3@ZAP70
5.87e-64FFCP PHASE1:Hg19::chr2:98330009..98330020,+#_30f32253b7202840cab0e438ea1b83c3p3@ZAP70
6.87e-64FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_c5b38440e25630d713c506421eda4a07p@chr3:103672068..103672090, -
6.87e-64FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_c5b38440e25630d713c506421eda4a07p@chr6:99215016..99215036, +
6.87e-64FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_c5b38440e25630d713c506421eda4a07p@chr3:103672068..103672090, -
6.87e-64FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_c5b38440e25630d713c506421eda4a07p@chr6:99215016..99215036, +
7.69e-64FFCP PHASE2:Mm9::chr1:108608936..108608961,-#_3f4f9569fd7a3dc99b2dd6f784fcb457p@chr1:108608936..108608961, -
7.69e-64FFCP PHASE1:Mm9::chr1:108608936..108608961,-#_3f4f9569fd7a3dc99b2dd6f784fcb457p@chr1:108608936..108608961, -
8.12e-64FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_dc44f20f132e6869a079fed164df5b26p@chr6:48634453..48634468, -
8.12e-64FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_dc44f20f132e6869a079fed164df5b26p@chr6:48634453..48634468, -
1.13e-63FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_4b753df3aef00ebc1881f057a2e0a6d3p5@uc007vxz.1
1.13e-63FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_4b753df3aef00ebc1881f057a2e0a6d3p5@uc007vxz.1
1.59e-63FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_8fdf561768c7970ab97690e00fa05c37p@chr7:132751140..132751183, +
1.59e-63FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_8fdf561768c7970ab97690e00fa05c37p@chr7:132751140..132751183, +
4.29e-63FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_f41d676474f7827234a2ac37688c5b27p@chr4:32328217..32328228, -
4.29e-63FFCP PHASE1:Mm9::chr2:11081400..11081406,-#_f41d676474f7827234a2ac37688c5b27p@chr2:11081400..11081406, -
4.29e-63FFCP PHASE2:Mm9::chr4:155396384..155396395,-#_f41d676474f7827234a2ac37688c5b27-, p@chr4:155396384..155396395
4.29e-63FFCP PHASE2:Mm9::chr4:155405070..155405083,+#_f41d676474f7827234a2ac37688c5b27p@chr4:155405070..155405083, +
4.29e-63FFCP PHASE2:Mm9::chr6:99045597..99045607,-#_f41d676474f7827234a2ac37688c5b27p@chr6:99045597..99045607, -
4.29e-63FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_f41d676474f7827234a2ac37688c5b27p@chr14:53242248..53242261, +
4.29e-63FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_f41d676474f7827234a2ac37688c5b27p@chr14:54817583..54817593, -
4.29e-63FFCP PHASE1:Mm9::chr14:54831066..54831079,+#_f41d676474f7827234a2ac37688c5b27p@chr14:54831066..54831079, +
4.29e-63FFCP PHASE2:Mm9::chr6:125215605..125215616,+#_f41d676474f7827234a2ac37688c5b27p3@4930417O13Rik
4.29e-63FFCP PHASE2:Mm9::chr1:167720341..167720362,+#_f41d676474f7827234a2ac37688c5b27p@chr1:167720341..167720362, +