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CL:0000624

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Name:CD4-positive, alpha-beta T cell
Namespace:FANTOM
Definition:"A mature alpha-beta T cell that expresses an alpha-beta T cell receptor and the CD4 coreceptor." [GOC:add, ISBN:0781735149]
Synonyms: "CD4-positive, alpha-beta T lymphocyte" EXACT []
"CD4-positive, alpha-beta T-cell" EXACT []
"CD4-positive, alpha-beta T-lymphocyte" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000791(mature alpha-beta T cell)
disjoint_from:CL:0000625(CD8-positive, alpha-beta T cell)



Children


is a:CL:0000792 (CD4-positive, CD25-positive, alpha-beta regulatory T cell),CL:0000895 (naive thymus-derived CD4-positive, alpha-beta T cell),CL:0000896 (activated CD4-positive, alpha-beta T cell),CL:0000897 (CD4-positive, alpha-beta memory T cell),CL:0002436 (mature CD4 single-positive thymocyte)
derives from:FF:0000031 (CD4-positive T cell sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11225-116C1 (CD4+ T Cells, donor1)
  • 11306-117C1 (CD4+ T Cells, donor2)
  • 11382-118B5 (CD4+ T Cells, donor3)
  • 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
  • 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
  • 11786-124B4 (CD4+CD25-CD45RA- memory conventional T cells, donor1)
  • 11813-124E4 (CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J))
  • 11814-124E5 (CD4+CD25+ regulatory T cells, pool1 (C57BL_6J))
  • 11815-124E6 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J))
  • 11816-124E7 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J))

... further results Mouse (Mus musculus)

  • 11225-116C1 (CD4+ T Cells, donor1)
  • 11306-117C1 (CD4+ T Cells, donor2)
  • 11382-118B5 (CD4+ T Cells, donor3)
  • 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
  • 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
  • 11786-124B4 (CD4+CD25-CD45RA- memory conventional T cells, donor1)
  • 11813-124E4 (CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J))
  • 11814-124E5 (CD4+CD25+ regulatory T cells, pool1 (C57BL_6J))
  • 11815-124E6 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J))
  • 11816-124E7 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J))

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000624 (CD4-positive, alpha-beta T cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.36e-91FFCP PHASE1:Hg19::chr22:45713951..45713952,+#_084a2c74ab4560894843a858a4ec27dcp18@FAM118A
4.36e-91FFCP PHASE2:Hg19::chr22:45713951..45713952,+#_084a2c74ab4560894843a858a4ec27dcp18@FAM118A
2.39e-90FFCP PHASE2:Hg19::chr2:191535264..191535276,-#_e702e91bea83b82dc4c51cefa4f944e3p@chr2:191535264..191535276, -
2.39e-90FFCP PHASE1:Hg19::chr2:191535264..191535276,-#_e702e91bea83b82dc4c51cefa4f944e3p@chr2:191535264..191535276, -
1.32e-86FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_2306390a5effc3d6144221806c0a0064p@chr4:32328217..32328228, -
1.32e-86FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_2306390a5effc3d6144221806c0a0064p@chr1:140069290..140069308, +
1.32e-86FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_2306390a5effc3d6144221806c0a0064p4@ENSMUST00000148466, p4@uc008zmw.1
1.32e-86FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_2306390a5effc3d6144221806c0a0064p@chr5:123465978..123465989, -
1.32e-86FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_2306390a5effc3d6144221806c0a0064p@chr13:105412781..105412798, +
1.32e-86FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_2306390a5effc3d6144221806c0a0064p@chr14:54817583..54817593, -
1.32e-86FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_2306390a5effc3d6144221806c0a0064+, p@chr1:140069290..140069308
1.32e-86FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_2306390a5effc3d6144221806c0a0064p@chr13:105412781..105412798, +
1.32e-86FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_2306390a5effc3d6144221806c0a0064p@chr4:32328217..32328228, -
1.32e-86FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_2306390a5effc3d6144221806c0a0064p4@ENSMUST00000148466, p4@uc008zmw.1
1.32e-86FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_2306390a5effc3d6144221806c0a0064p@chr5:123465978..123465989, -
1.32e-86FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_2306390a5effc3d6144221806c0a0064p@chr14:54817583..54817593, -
5.08e-85FFCP PHASE1:Hg19::chr21:32554632..32554638,+#_d8dbd009a6f4216aef2e7569707cb6bfp@chr21:32554632..32554638, +
5.08e-85FFCP PHASE2:Hg19::chr21:32554632..32554638,+#_d8dbd009a6f4216aef2e7569707cb6bfp@chr21:32554632..32554638, +
1.61e-84FFCP PHASE2:Hg19::chr15:63965111..63965141,-#_36558a688d1c50bf49b84d2beaa052e6p@chr15:63965111..63965141, -
1.61e-84FFCP PHASE1:Hg19::chr15:63965111..63965141,-#_36558a688d1c50bf49b84d2beaa052e6p@chr15:63965111..63965141, -
3.32e-84FFCP PHASE1:Hg19::chr10:33403568..33403605,+#_31222dc6dd725ccc4adfc1fb64c30ec8p@chr10:33403568..33403605, +
3.32e-84FFCP PHASE2:Hg19::chr10:33403568..33403605,+#_31222dc6dd725ccc4adfc1fb64c30ec8p@chr10:33403568..33403605, +
9.08e-84FFCP PHASE1:Hg19::chr17:46517705..46517712,+#_012e8ea020ce5f5836c0030b070b8b50p@chr17:46517705..46517712, +
9.08e-84FFCP PHASE2:Hg19::chr17:46517705..46517712,+#_012e8ea020ce5f5836c0030b070b8b50+, p@chr17:46517705..46517712
9.89e-82FFCP PHASE2:Hg19::chr3:73010101..73010107,+#_6c7ea96957de61ab35a1246ede476f85p@chr3:73010101..73010107, +
9.89e-82FFCP PHASE1:Hg19::chr3:73010101..73010107,+#_6c7ea96957de61ab35a1246ede476f85p@chr3:73010101..73010107, +
1.17e-81FFCP PHASE1:Hg19::chr21:32568033..32568068,-#_50ffdf99088f654507da6fce1eec098ep@chr21:32568033..32568068, -
1.17e-81FFCP PHASE2:Hg19::chr21:32568033..32568068,-#_50ffdf99088f654507da6fce1eec098ep@chr21:32568033..32568068, -
9.13e-79FFCP PHASE2:Hg19::chr20:57739225..57739236,-#_ba68a7932cd19f2b258291f01c204e11p@chr20:57739225..57739236, -
9.13e-79FFCP PHASE1:Hg19::chr20:57739225..57739236,-#_ba68a7932cd19f2b258291f01c204e11p@chr20:57739225..57739236, -
1.79e-78FFCP PHASE2:Hg19::chr20:35627331..35627342,+#_0c7d52965c746a0c134603f33e66a1ffp@chr20:35627331..35627342, +
1.79e-78FFCP PHASE1:Hg19::chr20:35627331..35627342,+#_0c7d52965c746a0c134603f33e66a1ffp@chr20:35627331..35627342, +
2.02e-77FFCP PHASE2:Mm9::chr6:48627672..48627688,+#_118ee6a72ec097687b9b2794e2318c0f+, p@chr6:48627672..48627688
2.02e-77FFCP PHASE1:Mm9::chr6:48627672..48627688,+#_118ee6a72ec097687b9b2794e2318c0fp@chr6:48627672..48627688, +
2.02e-77FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_118ee6a72ec097687b9b2794e2318c0fp3@uc007ytl.1
2.02e-77FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_118ee6a72ec097687b9b2794e2318c0fp3@uc007ytl.1
2.02e-77FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_118ee6a72ec097687b9b2794e2318c0fp3@Tnfrsf25
2.02e-77FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_118ee6a72ec097687b9b2794e2318c0fp3@Tnfrsf25
2.53e-77FFCP PHASE1:Mm9::chr4:32350855..32350868,+#_6f67465b4c7925ad19e15c0ac9c458fep@chr4:32350855..32350868, +
2.53e-77FFCP PHASE2:Mm9::chr4:32350855..32350868,+#_6f67465b4c7925ad19e15c0ac9c458fep@chr4:32350855..32350868, +
2.53e-77FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_6f67465b4c7925ad19e15c0ac9c458fep4@Cd40lg
2.53e-77FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_6f67465b4c7925ad19e15c0ac9c458fep4@Cd40lg
3.18e-77FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_ef657d5843b8b2ff463ba18423c72912p1@ENSMUST00000103733
3.18e-77FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_ef657d5843b8b2ff463ba18423c72912p1@ENSMUST00000103733
3.99e-77FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_88f725aef410afaa26066fd418122d87p@chr19:10869146..10869168, -
3.99e-77FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_88f725aef410afaa26066fd418122d87-, p@chr11:99015330..99015341
3.99e-77FFCP PHASE2:Mm9::chr9:14707004..14707015,-#_88f725aef410afaa26066fd418122d87p5@Folr4
3.99e-77FFCP PHASE1:Mm9::chr9:14707004..14707015,-#_88f725aef410afaa26066fd418122d87p5@Folr4
3.99e-77FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_88f725aef410afaa26066fd418122d87p@chr11:99015330..99015341, -
3.99e-77FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_88f725aef410afaa26066fd418122d87p@chr19:10869146..10869168, -
6.27e-77FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_5d8f3b39fbd2342b487191d78372acccp1@uc007tsm.1
6.27e-77FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_5d8f3b39fbd2342b487191d78372acccp@chr6:48637679..48637692, +
6.27e-77FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_5d8f3b39fbd2342b487191d78372acccp@chr6:48637679..48637692, +
6.27e-77FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_5d8f3b39fbd2342b487191d78372acccp1@uc007tsm.1
9.87e-77FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_58fa01bc290e81d261d3652a20dfe017p@chr4:32339511..32339518, +
9.87e-77FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_58fa01bc290e81d261d3652a20dfe017p@chr4:32339511..32339518, +
7.4e-76FFCP PHASE1:Mm9::chr13:30925425..30925436,-#_6c8b9891ce1efa066985b2c08014fb49p@chr13:30925425..30925436, -
7.4e-76FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_6c8b9891ce1efa066985b2c08014fb49p1@ENSMUST00000103701
7.4e-76FFCP PHASE2:Mm9::chr6:125215345..125215360,-#_6c8b9891ce1efa066985b2c08014fb49p@chr6:125215345..125215360, -
7.4e-76FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_6c8b9891ce1efa066985b2c08014fb49p@chr16:93777453..93777464, +
7.4e-76FFCP PHASE2:Mm9::chr13:30925425..30925436,-#_6c8b9891ce1efa066985b2c08014fb49p@chr13:30925425..30925436, -
7.4e-76FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_6c8b9891ce1efa066985b2c08014fb49p1@ENSMUST00000103701
7.4e-76FFCP PHASE1:Mm9::chr6:125215345..125215360,-#_6c8b9891ce1efa066985b2c08014fb49p@chr6:125215345..125215360, -
7.4e-76FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_6c8b9891ce1efa066985b2c08014fb49p@chr16:93777453..93777464, +
1.22e-75FFCP PHASE2:Hg19::chr1:6523897..6523925,+#_85034f7d4e352236ebb7bb33c9ff4197p@chr1:6523897..6523925, +
1.22e-75FFCP PHASE1:Hg19::chr1:6523897..6523925,+#_85034f7d4e352236ebb7bb33c9ff4197p@chr1:6523897..6523925, +
1.48e-75FFCP PHASE1:Hg19::chr18:13276704..13276707,-#_deaf99a64b93e335d213284fa987560dp@chr18:13276704..13276707, -
1.48e-75FFCP PHASE2:Hg19::chr18:13276704..13276707,-#_deaf99a64b93e335d213284fa987560dp@chr18:13276704..13276707, -
1.79e-75FFCP PHASE2:Hg19::chr5:176867600..176867609,+#_0da5778435cece717068ed1ce8bd374f+, p@chr5:176867600..176867609
1.79e-75FFCP PHASE1:Hg19::chr5:176867600..176867609,+#_0da5778435cece717068ed1ce8bd374fp@chr5:176867600..176867609, +
2.81e-75FFCP PHASE2:Hg19::chrX:118822985..118823001,+#_1b3fd4b19296a304ff078f9188006192p@chrX:118822985..118823001, +
2.81e-75FFCP PHASE1:Hg19::chrX:118822985..118823001,+#_1b3fd4b19296a304ff078f9188006192p@chrX:118822985..118823001, +
5.18e-75FFCP PHASE1:Hg19::chr10:104372787..104372796,-#_9da11cba03576903039ddee735a1e73ap@chr10:104372787..104372796, -
5.18e-75FFCP PHASE2:Hg19::chr10:104372787..104372796,-#_9da11cba03576903039ddee735a1e73ap@chr10:104372787..104372796, -
5.66e-75FFCP PHASE2:Hg19::chr18:13382698..13382707,+#_9744da95279f519a6cfdb88bac4080b0p@chr18:13382698..13382707, +
5.66e-75FFCP PHASE1:Hg19::chr18:13382698..13382707,+#_9744da95279f519a6cfdb88bac4080b0p@chr18:13382698..13382707, +
8.29e-75FFCP PHASE1:Hg19::chr12:25530605..25530613,+#_54e6da9179e86eab7112869c823a602fp@chr12:25530605..25530613, +
8.29e-75FFCP PHASE2:Hg19::chr12:25530605..25530613,+#_54e6da9179e86eab7112869c823a602fp@chr12:25530605..25530613, +
9.54e-75FFCP PHASE1:Hg19::chr6:16652333..16652336,+#_610dfe3fffa4c562e2d6d5be45d9d09dp@chr6:16652333..16652336, +
9.54e-75FFCP PHASE2:Hg19::chr6:16652333..16652336,+#_610dfe3fffa4c562e2d6d5be45d9d09dp@chr6:16652333..16652336, +
3.75e-74FFCP PHASE2:Hg19::chr6:143222105..143222116,+#_5cefd6681e235c69f61065607c565d1ap@chr6:143222105..143222116, +
3.75e-74FFCP PHASE1:Hg19::chr6:143222105..143222116,+#_5cefd6681e235c69f61065607c565d1ap@chr6:143222105..143222116, +
7.67e-74FFCP PHASE1:Hg19::chr5:141484393..141484402,+#_18bee9cfebd6a3227678605812d75d33p@chr5:141484393..141484402, +
7.67e-74FFCP PHASE2:Hg19::chr5:141484393..141484402,+#_18bee9cfebd6a3227678605812d75d33+, p@chr5:141484393..141484402
4.46e-73FFCP PHASE2:Hg19::chr2:162868437..162868456,+#_00a087749dbd708ee201fa925d94286dp@chr2:162868437..162868456, +
4.46e-73FFCP PHASE1:Hg19::chr2:162868437..162868456,+#_00a087749dbd708ee201fa925d94286dp@chr2:162868437..162868456, +
4.09e-70FFCP PHASE1:Hg19::chr20:5826953..5826990,-#_c61392b3e914c724d70fd7473debc559p@chr20:5826953..5826990, -
4.09e-70FFCP PHASE2:Hg19::chr20:5826953..5826990,-#_c61392b3e914c724d70fd7473debc559p@chr20:5826953..5826990, -
4.51e-70FFCP PHASE1:Mm9::chr14:54038027..54038068,+#_b9bbeb22a35b843344b53226cab324d4p1@uc007tsb.1
4.51e-70FFCP PHASE2:Mm9::chr14:54038027..54038068,+#_b9bbeb22a35b843344b53226cab324d4p1@uc007tsb.1
5.54e-70FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_46b8d2f100bbf7a8011966829737c71fp1@ENSMUST00000103714
5.54e-70FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_46b8d2f100bbf7a8011966829737c71fp1@ENSMUST00000103714
6.8e-70FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_4a4230269a74d44b75891d4591d73529-, p@chr14:56207154..56207165
6.8e-70FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_4a4230269a74d44b75891d4591d73529p@chr5:123440486..123440504, -
6.8e-70FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_4a4230269a74d44b75891d4591d73529p@chr5:123440486..123440504, -
6.8e-70FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_4a4230269a74d44b75891d4591d73529p@chr14:56207154..56207165, -
8.34e-70FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_5127948de956b1ce7835995d1880ced8p@chr5:123440767..123440778, +
8.34e-70FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_5127948de956b1ce7835995d1880ced8p@chr7:31935025..31935037, +
8.34e-70FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_5127948de956b1ce7835995d1880ced8p@chr7:31935025..31935037, +
8.34e-70FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_5127948de956b1ce7835995d1880ced8p@chr8:84082784..84082795, +