Personal tools

CL:0000682

From FANTOM5_SSTAR

Jump to: navigation, search
Name:M cell of gut
Namespace:FANTOM
Definition:"An absorptive cell of the gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes." [GOC:jb, GOC:tfm]
Xrefs:
links:

BTO:0003600

FMA:62929
Synonyms: "M-cell" EXACT []
"microfold cell" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000473(defensive cell),CL:0000627(transporting cell),CL:0002251(epithelial cell of alimentary canal)
part_of:UBERON:0003929(gut epithelium)



Children


derives from:FF:0011159 (mouse GP2-positive M cell sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000682 (M cell of gut), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
7.35e-53FFCP PHASE2:Mm9::chr6:3437479..3437484,-#_5ffdfa673df7469cf842c6cb2d2ce0f6p@chr6:3437479..3437484, -
7.35e-53FFCP PHASE1:Mm9::chr6:3437479..3437484,-#_5ffdfa673df7469cf842c6cb2d2ce0f6p@chr6:3437479..3437484, -
1.65e-52FFCP PHASE1:Mm9::chr1:72247892..72247896,-#_db4436cf498678433d648a809f600cdfp@chr1:72247892..72247896, -
1.65e-52FFCP PHASE1:Mm9::chr8:124945700..124945703,+#_db4436cf498678433d648a809f600cdfp1@Il17c
1.65e-52FFCP PHASE2:Mm9::chr8:124945700..124945703,+#_db4436cf498678433d648a809f600cdfp1@Il17c
1.65e-52FFCP PHASE2:Mm9::chr1:72247892..72247896,-#_db4436cf498678433d648a809f600cdfp@chr1:72247892..72247896, -
4.58e-44FFCP PHASE2:Mm9::chr7:38968769..38968776,+#_0e0663c21e28afed52683e7a8f44967dp10@1600014C10Rik
4.58e-44FFCP PHASE1:Mm9::chr7:38968769..38968776,+#_0e0663c21e28afed52683e7a8f44967dp10@1600014C10Rik
6.41e-44FFCP PHASE2:Mm9::chr4:104940057..104940067,+#_a49a87d81218442ff6b28e4e4120b245p@chr4:104940057..104940067, +
6.41e-44FFCP PHASE1:Mm9::chr4:104940057..104940067,+#_a49a87d81218442ff6b28e4e4120b245p@chr4:104940057..104940067, +
8.97e-44FFCP PHASE1:Mm9::chr7:38969538..38969543,-#_47828f8efb2693d0df291fb1156664c3p@chr7:38969538..38969543, -
8.97e-44FFCP PHASE2:Mm9::chr7:38969538..38969543,-#_47828f8efb2693d0df291fb1156664c3p@chr7:38969538..38969543, -
4.15e-39FFCP PHASE2:Mm9::chr15:74647718..74647727,-#_527fbfc1af5dd70a703a040f800cae31p2@Gml
4.15e-39FFCP PHASE1:Mm9::chr15:74647718..74647727,-#_527fbfc1af5dd70a703a040f800cae31p2@Gml
1.17e-38FFCP PHASE1:Mm9::chr7:19152867..19152872,-#_ad37dd53e0954041498f2a3eb5af6dc3p5@Psg27
1.17e-38FFCP PHASE2:Mm9::chr7:19152867..19152872,-#_ad37dd53e0954041498f2a3eb5af6dc3p5@Psg27
2.09e-38FFCP PHASE1:Mm9::chr14:121693634..121693643,-#_2ad1d7c3c908ae1350e3f83cfeb9dfc8p@chr14:121693634..121693643, -
2.09e-38FFCP PHASE2:Mm9::chr14:121693634..121693643,-#_2ad1d7c3c908ae1350e3f83cfeb9dfc8p@chr14:121693634..121693643, -
4.98e-38FFCP PHASE1:Mm9::chr17:73681574..73681576,+#_3fa0ffcf5c756735e36d535a0e2aaeaap@chr17:73681574..73681576, +
4.98e-38FFCP PHASE2:Mm9::chr17:73681574..73681576,+#_3fa0ffcf5c756735e36d535a0e2aaeaap@chr17:73681574..73681576, +
6.64e-38FFCP PHASE2:Mm9::chr1:58810538..58810543,+#_abbe96a4ebe48b3d0db670d2c74ca648p@chr1:58810538..58810543, +
6.64e-38FFCP PHASE1:Mm9::chr1:58810538..58810543,+#_abbe96a4ebe48b3d0db670d2c74ca648p@chr1:58810538..58810543, +
1.18e-37FFCP PHASE2:Mm9::chr7:19152636..19152647,-#_f52bb65ef68465d104765b45afab13c7p3@Psg27
1.18e-37FFCP PHASE1:Mm9::chr7:19152636..19152647,-#_f52bb65ef68465d104765b45afab13c7p3@Psg27
3.67e-34FFCP PHASE2:Mm9::chr17:41017293..41017307,-#_9edc7f3dabc2fc3e279be0fc48510cabp@chr17:41017293..41017307, -
3.67e-34FFCP PHASE1:Mm9::chr17:41017293..41017307,-#_9edc7f3dabc2fc3e279be0fc48510cabp@chr17:41017293..41017307, -
7.89e-34FFCP PHASE1:Mm9::chr8:13351651..13351657,+#_8759e833e78682ac1eca7132e60b8cfep@chr8:13351651..13351657, +
7.89e-34FFCP PHASE1:Mm9::chr11:59700717..59700721,+#_8759e833e78682ac1eca7132e60b8cfep@chr11:59700717..59700721, +
7.89e-34FFCP PHASE2:Mm9::chr8:13351651..13351657,+#_8759e833e78682ac1eca7132e60b8cfep@chr8:13351651..13351657, +
7.89e-34FFCP PHASE2:Mm9::chr11:59700717..59700721,+#_8759e833e78682ac1eca7132e60b8cfe+, p@chr11:59700717..59700721
1.02e-33FFCP PHASE1:Mm9::chr15:58184398..58184415,-#_861f189895222b3d984a1965178d68d7p@chr15:58184398..58184415, -
1.02e-33FFCP PHASE2:Mm9::chr15:58184398..58184415,-#_861f189895222b3d984a1965178d68d7p@chr15:58184398..58184415, -
1.31e-33FFCP PHASE1:Mm9::chr7:6120193..6120204,-#_965de4e6c67b378a2421dc29ed6d6afbp@chr7:6120193..6120204, -
1.31e-33FFCP PHASE2:Mm9::chr7:6120193..6120204,-#_965de4e6c67b378a2421dc29ed6d6afbp@chr7:6120193..6120204, -
1.69e-33FFCP PHASE2:Mm9::chr16:57199200..57199210,-#_0cfc9603cc102e8fb529cfe32a6d35fap@chr16:57199200..57199210, -
1.69e-33FFCP PHASE1:Mm9::chr16:57199200..57199210,-#_0cfc9603cc102e8fb529cfe32a6d35fa-, p@chr16:57199200..57199210
2.18e-33FFCP PHASE2:Mm9::chr1:195129567..195129580,+#_8612f2f3c11c7425ea9f727780dfc532p8@Lamb3
2.18e-33FFCP PHASE1:Mm9::chr11:54787273..54787303,-#_8612f2f3c11c7425ea9f727780dfc532p@chr11:54787273..54787303, -
2.18e-33FFCP PHASE2:Mm9::chr11:54787273..54787303,-#_8612f2f3c11c7425ea9f727780dfc532p@chr11:54787273..54787303, -
2.18e-33FFCP PHASE1:Mm9::chr1:195129567..195129580,+#_8612f2f3c11c7425ea9f727780dfc532p8@Lamb3
2.8e-33FFCP PHASE2:Mm9::chr18:20714918..20714920,+#_e9ae44a4c4d92db088eab7b9ac351af3p@chr18:20714918..20714920, +
2.8e-33FFCP PHASE2:Mm9::chr3:103636771..103636777,+#_e9ae44a4c4d92db088eab7b9ac351af3+, p@chr3:103636771..103636777
2.8e-33FFCP PHASE2:Mm9::chr7:19110105..19110113,-#_e9ae44a4c4d92db088eab7b9ac351af3p@chr7:19110105..19110113, -
2.8e-33FFCP PHASE1:Mm9::chr7:19110105..19110113,-#_e9ae44a4c4d92db088eab7b9ac351af3p@chr7:19110105..19110113, -
2.8e-33FFCP PHASE1:Mm9::chr3:103636771..103636777,+#_e9ae44a4c4d92db088eab7b9ac351af3p@chr3:103636771..103636777, +
2.8e-33FFCP PHASE1:Mm9::chr6:113589357..113589371,-#_e9ae44a4c4d92db088eab7b9ac351af3-, p@chr6:113589357..113589371
2.8e-33FFCP PHASE2:Mm9::chr6:113589357..113589371,-#_e9ae44a4c4d92db088eab7b9ac351af3p@chr6:113589357..113589371, -
2.8e-33FFCP PHASE1:Mm9::chr18:20714918..20714920,+#_e9ae44a4c4d92db088eab7b9ac351af3p@chr18:20714918..20714920, +
3.61e-33FFCP PHASE2:Mm9::chr4:116494077..116494092,-#_1d8c93f2d766eb17eeeff14ec514f070p2@Hpdl
3.61e-33FFCP PHASE2:Mm9::chr7:138141963..138141967,-#_1d8c93f2d766eb17eeeff14ec514f070p@chr7:138141963..138141967, -
3.61e-33FFCP PHASE1:Mm9::chr7:138141963..138141967,-#_1d8c93f2d766eb17eeeff14ec514f070-, p@chr7:138141963..138141967
3.61e-33FFCP PHASE1:Mm9::chr4:116494077..116494092,-#_1d8c93f2d766eb17eeeff14ec514f070p2@Hpdl
4.64e-33FFCP PHASE2:Mm9::chr8:8533654..8533663,+#_153143f0cc874de657c3b2ab27663700p@chr8:8533654..8533663, +
4.64e-33FFCP PHASE1:Mm9::chr8:8533654..8533663,+#_153143f0cc874de657c3b2ab27663700p@chr8:8533654..8533663, +
7.68e-33FFCP PHASE1:Mm9::chr2:13415278..13415284,-#_d979d41aa131f194b5f2db15ee9818a4p@chr2:13415278..13415284, -
7.68e-33FFCP PHASE1:Mm9::chr15:27670949..27670953,+#_d979d41aa131f194b5f2db15ee9818a4p@chr15:27670949..27670953, +
7.68e-33FFCP PHASE2:Mm9::chr15:27670949..27670953,+#_d979d41aa131f194b5f2db15ee9818a4p@chr15:27670949..27670953, +
7.68e-33FFCP PHASE2:Mm9::chr2:13415278..13415284,-#_d979d41aa131f194b5f2db15ee9818a4p@chr2:13415278..13415284, -
1.16e-30FFCP PHASE1:Mm9::chr16:20695073..20695082,+#_96a7ecbbcbe90d5e616e3b060560ee11p11@Fam131a
1.16e-30FFCP PHASE2:Mm9::chr16:20695073..20695082,+#_96a7ecbbcbe90d5e616e3b060560ee11p11@Fam131a
1.83e-30FFCP PHASE1:Mm9::chr4:114914645..114914653,+#_aadbde217ee3194fc0561159ba7a3928p1@Cyp4a29-ps
1.83e-30FFCP PHASE2:Mm9::chr4:114914645..114914653,+#_aadbde217ee3194fc0561159ba7a3928p1@Cyp4a29-ps
2.3e-30FFCP PHASE1:Mm9::chr2:38469278..38469287,-#_67255c5e371f501624fa6ac4046a73b7p@chr2:38469278..38469287, -
2.3e-30FFCP PHASE1:Mm9::chr12:86479683..86479693,-#_67255c5e371f501624fa6ac4046a73b7p@chr12:86479683..86479693, -
2.3e-30FFCP PHASE2:Mm9::chr2:38469229..38469240,-#_67255c5e371f501624fa6ac4046a73b7p@chr2:38469229..38469240, -
2.3e-30FFCP PHASE1:Mm9::chr1:127346940..127346945,-#_67255c5e371f501624fa6ac4046a73b7p@chr1:127346940..127346945, -
2.3e-30FFCP PHASE2:Mm9::chr12:86479683..86479693,-#_67255c5e371f501624fa6ac4046a73b7p@chr12:86479683..86479693, -
2.3e-30FFCP PHASE2:Mm9::chr1:127346940..127346945,-#_67255c5e371f501624fa6ac4046a73b7p@chr1:127346940..127346945, -
2.3e-30FFCP PHASE2:Mm9::chr2:38469278..38469287,-#_67255c5e371f501624fa6ac4046a73b7-, p@chr2:38469278..38469287
2.3e-30FFCP PHASE1:Mm9::chr2:38469229..38469240,-#_67255c5e371f501624fa6ac4046a73b7p@chr2:38469229..38469240, -
3.62e-30FFCP PHASE2:Mm9::chr2:11414279..11414290,-#_0bb5cee73ac8688009173bdb5087c5bbp@chr2:11414279..11414290, -
3.62e-30FFCP PHASE2:Mm9::chr16:20867079..20867087,+#_0bb5cee73ac8688009173bdb5087c5bbp@chr16:20867079..20867087, +
3.62e-30FFCP PHASE2:Mm9::chr12:21502374..21502380,+#_0bb5cee73ac8688009173bdb5087c5bbp@chr12:21502374..21502380, +
3.62e-30FFCP PHASE2:Mm9::chr13:32952878..32952890,+#_0bb5cee73ac8688009173bdb5087c5bbp@chr13:32952878..32952890, +
3.62e-30FFCP PHASE1:Mm9::chr13:32952878..32952890,+#_0bb5cee73ac8688009173bdb5087c5bbp@chr13:32952878..32952890, +
3.62e-30FFCP PHASE1:Mm9::chr2:11414279..11414290,-#_0bb5cee73ac8688009173bdb5087c5bbp@chr2:11414279..11414290, -
3.62e-30FFCP PHASE2:Mm9::chr9:56730814..56730824,-#_0bb5cee73ac8688009173bdb5087c5bbp@chr9:56730814..56730824, -
3.62e-30FFCP PHASE1:Mm9::chr9:56730814..56730824,-#_0bb5cee73ac8688009173bdb5087c5bbp@chr9:56730814..56730824, -
3.62e-30FFCP PHASE1:Mm9::chr16:20867079..20867087,+#_0bb5cee73ac8688009173bdb5087c5bbp@chr16:20867079..20867087, +
3.62e-30FFCP PHASE1:Mm9::chr12:21502374..21502380,+#_0bb5cee73ac8688009173bdb5087c5bbp@chr12:21502374..21502380, +
4.54e-30FFCP PHASE1:Mm9::chr6:82998517..82998522,+#_750fbab7c1e7e6d5a839cf5962c55657p2@Loxl3
4.54e-30FFCP PHASE2:Mm9::chr3:89041849..89041862,-#_750fbab7c1e7e6d5a839cf5962c55657p@chr3:89041849..89041862, -
4.54e-30FFCP PHASE1:Mm9::chr3:89041849..89041862,-#_750fbab7c1e7e6d5a839cf5962c55657p@chr3:89041849..89041862, -
4.54e-30FFCP PHASE2:Mm9::chr6:82998517..82998522,+#_750fbab7c1e7e6d5a839cf5962c55657p2@Loxl3
5.61e-30FFCP PHASE1:Mm9::chr9:104230353..104230354,-#_071b2322056e60329663048741cde51fp@chr9:104230353..104230354, -
5.61e-30FFCP PHASE2:Mm9::chr9:104230353..104230354,-#_071b2322056e60329663048741cde51fp@chr9:104230353..104230354, -
5.7e-30FFCP PHASE1:Mm9::chr10:61337613..61337627,-#_4cc817102e9ccce43ab9d9f38f391355p@chr10:61337613..61337627, -
5.7e-30FFCP PHASE2:Mm9::chr10:61337613..61337627,-#_4cc817102e9ccce43ab9d9f38f391355p@chr10:61337613..61337627, -
5.7e-30FFCP PHASE1:Mm9::chr17:37004048..37004055,-#_4cc817102e9ccce43ab9d9f38f391355p4@Trim15
5.7e-30FFCP PHASE2:Mm9::chr17:37004048..37004055,-#_4cc817102e9ccce43ab9d9f38f391355p4@Trim15
7.14e-30FFCP PHASE2:Mm9::chr10:79568311..79568322,-#_e7b2e854e6a2c1fae62219cf04ad6e71p@chr10:79568311..79568322, -
7.14e-30FFCP PHASE2:Mm9::chr17:24112500..24112507,-#_e7b2e854e6a2c1fae62219cf04ad6e71p3@Prss30
7.14e-30FFCP PHASE1:Mm9::chr10:79568311..79568322,-#_e7b2e854e6a2c1fae62219cf04ad6e71p@chr10:79568311..79568322, -
7.14e-30FFCP PHASE1:Mm9::chr17:24112500..24112507,-#_e7b2e854e6a2c1fae62219cf04ad6e71p3@Prss30
7.89e-30FFCP PHASE2:Mm9::chr10:126566696..126566708,+#_a50488b8b086d083c47275df9a398a93p@chr10:126566696..126566708, +
7.89e-30FFCP PHASE1:Mm9::chr10:126566696..126566708,+#_a50488b8b086d083c47275df9a398a93p@chr10:126566696..126566708, +
1.12e-29FFCP PHASE1:Mm9::chr8:25506263..25506266,+#_a630453c3e25d493c689ed68873dffd3p@chr8:25506263..25506266, +
1.12e-29FFCP PHASE2:Mm9::chr8:25506263..25506266,+#_a630453c3e25d493c689ed68873dffd3p@chr8:25506263..25506266, +
1.4e-29FFCP PHASE2:Mm9::chr5:66443992..66444014,-#_e5f365b4653f5571f03f01c965446816p@chr5:66443992..66444014, -
1.4e-29FFCP PHASE1:Mm9::chr5:66443992..66444014,-#_e5f365b4653f5571f03f01c965446816p@chr5:66443992..66444014, -