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CL:0002600

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Name:smooth muscle cell of trachea
Namespace:FANTOM
Definition:"A smooth muscle cell of the trachea." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:50:28Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0003126(trachea)



Children


derives from:FF:0000184 (human smooth muscle cell of trachea sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002600 (smooth muscle cell of trachea), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.99e-131FFCP PHASE2:Hg19::chr4:139481823..139481855,+#_41f366cc575253a2df47328395954efcp5@ENST00000502915
8.99e-131FFCP PHASE2:Hg19::chr8:77108050..77108053,-#_41f366cc575253a2df47328395954efcp@chr8:77108050..77108053, -
8.99e-131FFCP PHASE1:Hg19::chr8:77108050..77108053,-#_41f366cc575253a2df47328395954efcp@chr8:77108050..77108053, -
8.99e-131FFCP PHASE1:Hg19::chr4:139481823..139481855,+#_41f366cc575253a2df47328395954efcp5@ENST00000502915
4.52e-50FFCP PHASE2:Hg19::chr6:55739493..55739502,-#_ef0be3602612e47ef392ef4e16e1b056p6@AB527577, p6@CU693346
4.52e-50FFCP PHASE2:Hg19::chr2:128224913..128224918,+#_ef0be3602612e47ef392ef4e16e1b056p1@ENST00000454503
4.52e-50FFCP PHASE1:Hg19::chr6:55739493..55739502,-#_ef0be3602612e47ef392ef4e16e1b056p6@AB527577, p6@CU693346
4.52e-50FFCP PHASE1:Hg19::chr2:128224913..128224918,+#_ef0be3602612e47ef392ef4e16e1b056p1@ENST00000454503
1.57e-37FFCP PHASE2:Hg19::chr19:34787674..34787690,-#_847a02b0cd48de095a958317098e483fp1@ENST00000431093
1.57e-37FFCP PHASE1:Hg19::chr19:34787674..34787690,-#_847a02b0cd48de095a958317098e483fp1@ENST00000431093
4.29e-34FFCP PHASE2:Hg19::chr17:59479934..59479943,+#_43f1b715caa9a4a21cb8b9b56a68284fp@chr17:59479934..59479943, +
4.29e-34FFCP PHASE1:Hg19::chr17:59479934..59479943,+#_43f1b715caa9a4a21cb8b9b56a68284fp@chr17:59479934..59479943, +
5.04e-34FFCP PHASE2:Hg19::chr6:134070066..134070077,+#_760e93aaabf85551c7baac4311ed9a89p@chr6:134070066..134070077, +
5.04e-34FFCP PHASE1:Hg19::chr6:134070066..134070077,+#_760e93aaabf85551c7baac4311ed9a89p@chr6:134070066..134070077, +
7.05e-34FFCP PHASE2:Hg19::chr17:79966642..79966666,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr17:79966642..79966666, +
7.05e-34FFCP PHASE1:Hg19::chr17:15686350..15686359,+#_afd8f00d6e5c886fd2da7c60b799d606p4@IL6STP1
7.05e-34FFCP PHASE1:Hg19::chr16:86612092..86612099,+#_afd8f00d6e5c886fd2da7c60b799d606p6@FOXL1
7.05e-34FFCP PHASE1:Hg19::chr17:79966642..79966666,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr17:79966642..79966666, +
7.05e-34FFCP PHASE2:Hg19::chr16:86612092..86612099,+#_afd8f00d6e5c886fd2da7c60b799d606p6@FOXL1
7.05e-34FFCP PHASE2:Hg19::chr17:15686350..15686359,+#_afd8f00d6e5c886fd2da7c60b799d606p4@IL6STP1
7.05e-34FFCP PHASE2:Hg19::chr8:43046621..43046633,+#_afd8f00d6e5c886fd2da7c60b799d606+, p@chr8:43046621..43046633
7.05e-34FFCP PHASE1:Hg19::chr8:43046621..43046633,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr8:43046621..43046633, +
7.05e-34FFCP PHASE2:Hg19::chr21:46790685..46790698,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr21:46790685..46790698, +
7.05e-34FFCP PHASE1:Hg19::chr21:46790685..46790698,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr21:46790685..46790698, +
1.6e-27FFCP PHASE2:Hg19::chr17:74533899..74533909,+#_2839ec616b301dc4bb56e9d08c84565ep5@PRCD
1.6e-27FFCP PHASE1:Hg19::chr17:74533899..74533909,+#_2839ec616b301dc4bb56e9d08c84565ep5@PRCD
7.14e-26FFCP PHASE2:Hg19::chr18:12977031..12977043,+#_8edd30b81c309bad51b27d762c0435f3p@chr18:12977031..12977043, +
7.14e-26FFCP PHASE1:Hg19::chr18:12977031..12977043,+#_8edd30b81c309bad51b27d762c0435f3p@chr18:12977031..12977043, +
7.14e-26FFCP PHASE1:Hg19::chr6:55739305..55739315,-#_8edd30b81c309bad51b27d762c0435f3p4@AB527577, p4@CU693346
7.14e-26FFCP PHASE2:Hg19::chr18:47087390..47087399,+#_8edd30b81c309bad51b27d762c0435f3p7@LIPG
7.14e-26FFCP PHASE1:Hg19::chr18:47087390..47087399,+#_8edd30b81c309bad51b27d762c0435f3p7@LIPG
7.14e-26FFCP PHASE1:Hg19::chr2:187615989..187616000,+#_8edd30b81c309bad51b27d762c0435f3p@chr2:187615989..187616000, +
7.14e-26FFCP PHASE2:Hg19::chr2:187615989..187616000,+#_8edd30b81c309bad51b27d762c0435f3p@chr2:187615989..187616000, +
7.14e-26FFCP PHASE2:Hg19::chr6:55739305..55739315,-#_8edd30b81c309bad51b27d762c0435f3p4@AB527577, p4@CU693346
9.18e-26FFCP PHASE1:Hg19::chr8:20125747..20125758,-#_3d9199359728aa7459aea32394c9551fp@chr8:20125747..20125758, -
9.18e-26FFCP PHASE2:Hg19::chr8:20125747..20125758,-#_3d9199359728aa7459aea32394c9551fp@chr8:20125747..20125758, -
1.85e-25FFCP PHASE2:Hg19::chr8:128387795..128387801,+#_ff77ad39159ad96b6ec6ca4c5d6c17e8p@chr8:128387795..128387801, +
1.85e-25FFCP PHASE1:Hg19::chr8:128387795..128387801,+#_ff77ad39159ad96b6ec6ca4c5d6c17e8+, p@chr8:128387795..128387801
1.7e-21FFCP PHASE2:Hg19::chr17:29335535..29335575,-#_120750d26785f00279599eff6d6d299cp@chr17:29335535..29335575, -
1.7e-21FFCP PHASE1:Hg19::chr17:29335535..29335575,-#_120750d26785f00279599eff6d6d299cp@chr17:29335535..29335575, -
2.31e-21FFCP PHASE2:Hg19::chr17:46671154..46671167,-#_e48f345788ced93b0550a269c6294cf5p4@HOXB5
2.31e-21FFCP PHASE1:Hg19::chr17:46671154..46671167,-#_e48f345788ced93b0550a269c6294cf5p4@HOXB5
4.66e-21FFCP PHASE1:Hg19::chr14:105297526..105297531,-#_c43c4ab41dbaea3a319948304f6627a7p1@RPS26P49
4.66e-21FFCP PHASE2:Hg19::chr14:105297526..105297531,-#_c43c4ab41dbaea3a319948304f6627a7p1@RPS26P49
4.66e-21FFCP PHASE1:Hg19::chr8:16613036..16613043,-#_c43c4ab41dbaea3a319948304f6627a7p@chr8:16613036..16613043, -
4.66e-21FFCP PHASE2:Hg19::chr8:16613036..16613043,-#_c43c4ab41dbaea3a319948304f6627a7p@chr8:16613036..16613043, -
6.96e-21FFCP PHASE2:Hg19::chr11:299519..299533,-#_5f5d923ca7425ae47224fc4737579fb1p1@IFITM5
6.96e-21FFCP PHASE1:Hg19::chr11:299519..299533,-#_5f5d923ca7425ae47224fc4737579fb1p1@IFITM5
1.29e-20FFCP PHASE1:Hg19::chr5:141703713..141703724,-#_85261c69134d4c27e5b99c490065c7a3p9@SPRY4
1.29e-20FFCP PHASE2:Hg19::chr5:141703713..141703724,-#_85261c69134d4c27e5b99c490065c7a3p9@SPRY4
7.2e-20FFCP PHASE2:Hg19::chr19:11306638..11306657,-#_499b55fb3898b5391f657fb8ade6e922p13@KANK2
7.2e-20FFCP PHASE1:Hg19::chr19:11306638..11306657,-#_499b55fb3898b5391f657fb8ade6e922p13@KANK2
2.17e-19FFCP PHASE1:Hg19::chr1:17914878..17914890,+#_a83609f84683e27eeb37c03fcbd22024p12@ARHGEF10L
2.17e-19FFCP PHASE2:Hg19::chr1:17914878..17914890,+#_a83609f84683e27eeb37c03fcbd22024p12@ARHGEF10L
7.67e-18FFCP PHASE2:Hg19::chr17:65440428..65440449,-#_3e4d9df63bf75f2c1f0e34c216c4bed2p@chr17:65440428..65440449, -
7.67e-18FFCP PHASE1:Hg19::chr17:65440428..65440449,-#_3e4d9df63bf75f2c1f0e34c216c4bed2p@chr17:65440428..65440449, -
9.07e-18FFCP PHASE2:Hg19::chr9:73028424..73028427,-#_594f1bafb998fbf4c896128931c12b02p18@KLF9
9.07e-18FFCP PHASE1:Hg19::chr9:73028424..73028427,-#_594f1bafb998fbf4c896128931c12b02p18@KLF9
1.07e-17FFCP PHASE1:Hg19::chr22:29965263..29965274,-#_2308833b97536750cd34ad085e546d55p@chr22:29965263..29965274, -
1.07e-17FFCP PHASE2:Hg19::chr22:29965263..29965274,-#_2308833b97536750cd34ad085e546d55p@chr22:29965263..29965274, -
1.07e-17FFCP PHASE2:Hg19::chr4:100304021..100304034,-#_2308833b97536750cd34ad085e546d55p@chr4:100304021..100304034, -
1.07e-17FFCP PHASE2:Hg19::chr3:141105560..141105572,-#_2308833b97536750cd34ad085e546d55p@chr3:141105560..141105572, -
1.07e-17FFCP PHASE1:Hg19::chr3:141105560..141105572,-#_2308833b97536750cd34ad085e546d55p@chr3:141105560..141105572, -
1.07e-17FFCP PHASE1:Hg19::chr4:100304021..100304034,-#_2308833b97536750cd34ad085e546d55p@chr4:100304021..100304034, -
1.07e-17FFCP PHASE2:Hg19::chr14:76447494..76447508,-#_2308833b97536750cd34ad085e546d55p16@TGFB3
1.07e-17FFCP PHASE1:Hg19::chr1:9302789..9302798,+#_2308833b97536750cd34ad085e546d55+, p@chr1:9302789..9302798
1.07e-17FFCP PHASE1:Hg19::chr14:76447494..76447508,-#_2308833b97536750cd34ad085e546d55p16@TGFB3
1.07e-17FFCP PHASE2:Hg19::chr1:9302789..9302798,+#_2308833b97536750cd34ad085e546d55p@chr1:9302789..9302798, +
1.27e-17FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_eabe3cb94adef0eaafc888e96e43415cp@chrY:58884631..58884640, +
1.27e-17FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_eabe3cb94adef0eaafc888e96e43415cp@chrY:58884631..58884640, +
1.27e-17FFCP PHASE1:Hg19::chr20:43589109..43589118,-#_eabe3cb94adef0eaafc888e96e43415cp2@TOMM34
1.27e-17FFCP PHASE2:Hg19::chr20:43589109..43589118,-#_eabe3cb94adef0eaafc888e96e43415cp2@TOMM34
1.37e-16FFCP PHASE2:Hg19::chr9:73094859..73094866,-#_09e5f5c0a154d896a23e0a6468fabf4dp@chr9:73094859..73094866, -
1.37e-16FFCP PHASE1:Hg19::chr9:73094859..73094866,-#_09e5f5c0a154d896a23e0a6468fabf4dp@chr9:73094859..73094866, -
2.19e-16FFCP PHASE1:Hg19::chr7:27183156..27183167,-#_2b612a0e8e86d6a1ed0a9799ff07faa5p8@HOXA5
2.19e-16FFCP PHASE2:Hg19::chr7:27183156..27183167,-#_2b612a0e8e86d6a1ed0a9799ff07faa5p8@HOXA5
2.56e-16FFCP PHASE2:Hg19::chr12:56389796..56389800,+#_c1a06b1d10d4ceb470cef2eac9da4407p@chr12:56389796..56389800, +
2.56e-16FFCP PHASE1:Hg19::chr12:56389796..56389800,+#_c1a06b1d10d4ceb470cef2eac9da4407p@chr12:56389796..56389800, +
4.65e-16FFCP PHASE2:Hg19::chr4:1161154..1161170,-#_51d35a8a349eced10f93a90dc4952554p@chr4:1161154..1161170, -
4.65e-16FFCP PHASE1:Hg19::chr4:1161154..1161170,-#_51d35a8a349eced10f93a90dc4952554p@chr4:1161154..1161170, -
5.02e-16FFCP PHASE2:Hg19::chr17:46670845..46670856,-#_4673425266fb45700938394efc38d847p8@AB464575
5.02e-16FFCP PHASE1:Hg19::chr17:46670845..46670856,-#_4673425266fb45700938394efc38d847p8@AB464575
5.41e-16FFCP PHASE2:Hg19::chr11:101918136..101918145,+#_71770ba81b3742b10568923ba2bf6323p2@C11orf70
5.41e-16FFCP PHASE1:Hg19::chr11:101918136..101918145,+#_71770ba81b3742b10568923ba2bf6323p2@C11orf70
7.88e-16FFCP PHASE1:Hg19::chr3:123518704..123518728,-#_3f222d24dcb4a2295b7a6c7f1c73b090p28@MYLK
7.88e-16FFCP PHASE2:Hg19::chr3:123518704..123518728,-#_3f222d24dcb4a2295b7a6c7f1c73b090p28@MYLK
2.05e-15FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_6c547a384531e4f380855108d1c80c7dp@chr10:81923378..81923389, -
2.05e-15FFCP PHASE2:Hg19::chr19:11546153..11546168,+#_6c547a384531e4f380855108d1c80c7dp16@PRKCSH
2.05e-15FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_6c547a384531e4f380855108d1c80c7dp@chr10:81923378..81923389, -
2.05e-15FFCP PHASE1:Hg19::chr19:11546153..11546168,+#_6c547a384531e4f380855108d1c80c7dp16@PRKCSH
2.37e-15FFCP PHASE1:Hg19::chr10:92178805..92178827,+#_034573813c4f3b8e01f7678eb761b577p@chr10:92178805..92178827, +
2.37e-15FFCP PHASE2:Hg19::chr17:42164091..42164102,-#_034573813c4f3b8e01f7678eb761b577p@chr17:42164091..42164102, -
2.37e-15FFCP PHASE1:Hg19::chr17:42164091..42164102,-#_034573813c4f3b8e01f7678eb761b577p@chr17:42164091..42164102, -
2.37e-15FFCP PHASE2:Hg19::chr10:92178805..92178827,+#_034573813c4f3b8e01f7678eb761b577p@chr10:92178805..92178827, +
2.74e-15FFCP PHASE2:Hg19::chr7:25400379..25400385,+#_0d8ec0a014e79973fd12ebd44b5ff582p@chr7:25400379..25400385, +
2.74e-15FFCP PHASE1:Hg19::chr7:25400379..25400385,+#_0d8ec0a014e79973fd12ebd44b5ff582p@chr7:25400379..25400385, +
4.8e-15FFCP PHASE1:Hg19::chr7:27154961..27154973,+#_484329547b6f65b5d88103316502a071p1@ENST00000517635
4.8e-15FFCP PHASE2:Hg19::chr7:27154961..27154973,+#_484329547b6f65b5d88103316502a071p1@ENST00000517635
4.95e-15FFCP PHASE1:Hg19::chr12:7260968..7260978,-#_f5578181f114d85c94f0bf7e388266c7p5@C1RL
4.95e-15FFCP PHASE2:Hg19::chr12:7260968..7260978,-#_f5578181f114d85c94f0bf7e388266c7p5@C1RL