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DOID:1749

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Name:squamous cell carcinoma
Namespace:FANTOM
Definition:"A carcinoma that derives_from squamous epithelial cells." [url:http://en.wikipedia.org/wiki/Squamous_cell_carcinoma, url:http://www.medicinenet.com/skin_cancer/page2.htm]
Xrefs:
links:

MSH:D002294
NCI:C2929
SNOMEDCT_2010_1_31:154605007
SNOMEDCT_2010_1_31:189566008
SNOMEDCT_2010_1_31:28899001
SNOMEDCT_2010_1_31:402815007
UMLS_CUI:C0007137

UMLS_CUI:C0751688
Synonyms: "epidermoid carcinoma" EXACT [CSP2005:2000-3145]
"malignant squamous cell tumor" EXACT [NCI2004_11_17:C4971]
"squamous carcinoma" EXACT [NCI2004_11_17:C2929]
"squamous cell cancer" EXACT []
"squamous cell carcinoma (disorder)" EXACT [SNOMEDCT_2005_07_31:402815007]
"squamous cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:28899001]
"squamous cell carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189566008]
"squamous cell Epithelioma" EXACT [NCI2004_11_17:C8999]
Alt_id: DOID:5512

Ontology association
Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.

link to ontology dataset
data


Parents

is_a:DOID:305(carcinoma)



Children


is a:DOID:4830 (adenosquamous carcinoma)


Ontology Tree: Loaded from BioPortal

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1749 (squamous cell carcinoma), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.52e-75FFCP PHASE2:Hg19::chr1:209944599..209944616,-#_9d2cbefed9d6ac61e904574822f6fae5p@chr1:209944599..209944616, -
1.52e-75FFCP PHASE1:Hg19::chr1:209944599..209944616,-#_9d2cbefed9d6ac61e904574822f6fae5p@chr1:209944599..209944616, -
2.65e-72FFCP PHASE1:Hg19::chr11:70245655..70245668,-#_9cd96311d12c9dfbddee9d0beca59bb5p@chr11:70245655..70245668, -
2.65e-72FFCP PHASE2:Hg19::chr11:70245655..70245668,-#_9cd96311d12c9dfbddee9d0beca59bb5p@chr11:70245655..70245668, -
2.04e-63FFCP PHASE1:Hg19::chr1:55436540..55436544,-#_1a3f12861e65eeffe42d8c15b8871250p@chr1:55436540..55436544, -
2.04e-63FFCP PHASE2:Hg19::chr1:55436540..55436544,-#_1a3f12861e65eeffe42d8c15b8871250p@chr1:55436540..55436544, -
3.14e-63FFCP PHASE2:Hg19::chr7:55053327..55053342,+#_fe54b1a4549f07e75a763e4d8faf95f0p@chr7:55053327..55053342, +
3.14e-63FFCP PHASE1:Hg19::chr7:55053327..55053342,+#_fe54b1a4549f07e75a763e4d8faf95f0p@chr7:55053327..55053342, +
8.34e-63FFCP PHASE1:Hg19::chr3:151034414..151034434,-#_bb702cc8715ce5c07fe73e982e86dbf4p2@GPR87
8.34e-63FFCP PHASE2:Hg19::chr3:151034414..151034434,-#_bb702cc8715ce5c07fe73e982e86dbf4p2@GPR87
1.33e-60FFCP PHASE1:Hg19::chr6:19418214..19418218,-#_1c929652cfbee4e13d62cfff8a363bf2p@chr6:19418214..19418218, -
1.33e-60FFCP PHASE2:Hg19::chr6:19418214..19418218,-#_1c929652cfbee4e13d62cfff8a363bf2p@chr6:19418214..19418218, -
4.0e-57FFCP PHASE1:Hg19::chr1:209945462..209945477,-#_d927841649aef925e4ef1c3527dc3f1dp@chr1:209945462..209945477, -
4.0e-57FFCP PHASE2:Hg19::chr1:209945462..209945477,-#_d927841649aef925e4ef1c3527dc3f1dp@chr1:209945462..209945477, -
4.38e-56FFCP PHASE2:Hg19::chr7:55053266..55053282,+#_51bebe07454210e10a9fb3954911b548p@chr7:55053266..55053282, +
4.38e-56FFCP PHASE1:Hg19::chr7:55053266..55053282,+#_51bebe07454210e10a9fb3954911b548p@chr7:55053266..55053282, +
4.21e-53FFCP PHASE1:Hg19::chr1:153530641..153530645,-#_6a896477e2604efb2c4a4a1d8cdd683ap@chr1:153530641..153530645, -
4.21e-53FFCP PHASE2:Hg19::chr1:153530641..153530645,-#_6a896477e2604efb2c4a4a1d8cdd683ap@chr1:153530641..153530645, -
5.73e-53FFCP PHASE2:Hg19::chr21:38631055..38631068,-#_9f3c98a8a0ccf3ce8e0db36db440dbb8p@chr21:38631055..38631068, -
5.73e-53FFCP PHASE1:Hg19::chr21:38631055..38631068,-#_9f3c98a8a0ccf3ce8e0db36db440dbb8p@chr21:38631055..38631068, -
1.69e-50FFCP PHASE1:Hg19::chr8:126044339..126044344,-#_0f9cb99a85150f5ad9df3fd126143e7ap@chr8:126044339..126044344, -
1.69e-50FFCP PHASE2:Hg19::chr8:126044339..126044344,-#_0f9cb99a85150f5ad9df3fd126143e7ap@chr8:126044339..126044344, -
2.43e-49FFCP PHASE2:Hg19::chr17:39755734..39755747,-#_238289c4c1d0923386832f6101099326p@chr17:39755734..39755747, -
2.43e-49FFCP PHASE1:Hg19::chr17:39755734..39755747,-#_238289c4c1d0923386832f6101099326p@chr17:39755734..39755747, -
2.53e-46FFCP PHASE1:Hg19::chr10:54215029..54215039,-#_717d215338bb70ff6e6ff36b2f718bf9p5@ENST00000435813, p5@uc001jjs.2
2.53e-46FFCP PHASE2:Hg19::chr10:54215029..54215039,-#_717d215338bb70ff6e6ff36b2f718bf9p5@ENST00000435813, p5@uc001jjs.2
1.76e-45FFCP PHASE2:Hg19::chr17:39675950..39675974,-#_87820dc8f4adc14b2e4bb1e42211fc1fp@chr17:39675950..39675974, -
1.76e-45FFCP PHASE2:Hg19::chr18:61586483..61586487,+#_87820dc8f4adc14b2e4bb1e42211fc1fp@chr18:61586483..61586487, +
1.76e-45FFCP PHASE1:Hg19::chr17:39675950..39675974,-#_87820dc8f4adc14b2e4bb1e42211fc1fp@chr17:39675950..39675974, -
1.76e-45FFCP PHASE1:Hg19::chr18:61586483..61586487,+#_87820dc8f4adc14b2e4bb1e42211fc1fp@chr18:61586483..61586487, +
4.38e-44FFCP PHASE2:Hg19::chr3:153697368..153697372,+#_60b302fb0757175316c6e74e89b35c0ap@chr3:153697368..153697372, +
4.38e-44FFCP PHASE1:Hg19::chr3:153697368..153697372,+#_60b302fb0757175316c6e74e89b35c0ap@chr3:153697368..153697372, +
1.27e-43FFCP PHASE2:Hg19::chr19:51523412..51523427,-#_415e19580e3fb7d6e7c21b1f2063d43ap2@KLK10
1.27e-43FFCP PHASE1:Hg19::chr19:51523412..51523427,-#_415e19580e3fb7d6e7c21b1f2063d43ap2@KLK10
4.85e-43FFCP PHASE1:Hg19::chrX:15683147..15683159,-#_05028423ada5f7c90a2865743e39c0e2p3@TMEM27
4.85e-43FFCP PHASE1:Hg19::chr17:39675882..39675894,-#_05028423ada5f7c90a2865743e39c0e2p@chr17:39675882..39675894, -
4.85e-43FFCP PHASE2:Hg19::chr7:55053219..55053226,+#_05028423ada5f7c90a2865743e39c0e2+, p@chr7:55053219..55053226
4.85e-43FFCP PHASE2:Hg19::chrX:15683147..15683159,-#_05028423ada5f7c90a2865743e39c0e2p3@TMEM27
4.85e-43FFCP PHASE1:Hg19::chr7:55053219..55053226,+#_05028423ada5f7c90a2865743e39c0e2p@chr7:55053219..55053226, +
4.85e-43FFCP PHASE2:Hg19::chr17:39675882..39675894,-#_05028423ada5f7c90a2865743e39c0e2p@chr17:39675882..39675894, -
1.42e-40FFCP PHASE2:Hg19::chr13:74071880..74071894,+#_0a20058fb511b0479a20452d454af0a5p@chr13:74071880..74071894, +
1.42e-40FFCP PHASE1:Hg19::chr13:74071880..74071894,+#_0a20058fb511b0479a20452d454af0a5p@chr13:74071880..74071894, +
1.5e-40FFCP PHASE2:Hg19::chr5:150998590..150998611,-#_ef66310203f96f942929fc33991e034cp@chr5:150998590..150998611, -
1.5e-40FFCP PHASE1:Hg19::chr5:150998590..150998611,-#_ef66310203f96f942929fc33991e034cp@chr5:150998590..150998611, -
2.02e-40FFCP PHASE1:Hg19::chrX:41765898..41765915,-#_2242fd59171cf87fb4f5446b614cfa5fp@chrX:41765898..41765915, -
2.02e-40FFCP PHASE2:Hg19::chrX:41765898..41765915,-#_2242fd59171cf87fb4f5446b614cfa5fp@chrX:41765898..41765915, -
6.43e-40FFCP PHASE2:Hg19::chr20:30153874..30153891,+#_1b6427791b8d5abd45e60485d12715efp8@HM13
6.43e-40FFCP PHASE1:Hg19::chr20:30153874..30153891,+#_1b6427791b8d5abd45e60485d12715efp8@HM13
2.28e-39FFCP PHASE2:Hg19::chr17:72940334..72940358,+#_b4d7625d0c9e0f566468018ff34801ffp@chr17:72940334..72940358, +
2.28e-39FFCP PHASE1:Hg19::chr17:72940334..72940358,+#_b4d7625d0c9e0f566468018ff34801ffp@chr17:72940334..72940358, +
2.41e-39FFCP PHASE1:Hg19::chr10:54259403..54259416,+#_b9e0b3856ed5475424d73ef74eb11636p@chr10:54259403..54259416, +
2.41e-39FFCP PHASE2:Hg19::chr10:54259403..54259416,+#_b9e0b3856ed5475424d73ef74eb11636p@chr10:54259403..54259416, +
4.5e-38FFCP PHASE2:Hg19::chr7:55053540..55053550,+#_2c0758678491db52f17f2425514a1e43p@chr7:55053540..55053550, +
4.5e-38FFCP PHASE1:Hg19::chr7:55053540..55053550,+#_2c0758678491db52f17f2425514a1e43p@chr7:55053540..55053550, +
2.13e-37FFCP PHASE2:Hg19::chr11:57558934..57558956,+#_51b3001e773c0a6c4b3bdc8d4d702bfep8@CTNND1
2.13e-37FFCP PHASE1:Hg19::chr11:57558934..57558956,+#_51b3001e773c0a6c4b3bdc8d4d702bfep8@CTNND1
1.18e-36FFCP PHASE2:Hg19::chr12:20975224..20975226,-#_80abe3f59019471b12dbb350d50aab13p@chr12:20975224..20975226, -
1.18e-36FFCP PHASE1:Hg19::chr12:20975224..20975226,-#_80abe3f59019471b12dbb350d50aab13p@chr12:20975224..20975226, -
2.27e-36FFCP PHASE2:Hg19::chr20:52784969..52785020,+#_e124926aec3dacc55dcd3ff9f459f7c9p@chr20:52784969..52785020, +
2.27e-36FFCP PHASE1:Hg19::chr20:52784969..52785020,+#_e124926aec3dacc55dcd3ff9f459f7c9p@chr20:52784969..52785020, +
2.56e-36FFCP PHASE2:Hg19::chr5:39255776..39255791,+#_e7c23f4fd5b1e461bb817fa9717963fep@chr5:39255776..39255791, +
2.56e-36FFCP PHASE2:Hg19::chr17:39678090..39678101,-#_e7c23f4fd5b1e461bb817fa9717963fep4@KRT15
2.56e-36FFCP PHASE1:Hg19::chr17:39678090..39678101,-#_e7c23f4fd5b1e461bb817fa9717963fep4@KRT15
2.56e-36FFCP PHASE1:Hg19::chr5:39255776..39255791,+#_e7c23f4fd5b1e461bb817fa9717963fep@chr5:39255776..39255791, +
3.32e-36FFCP PHASE2:Hg19::chr2:31607762..31607771,-#_1199e488c3f39536ebfb4250ffffc311p@chr2:31607762..31607771, -
3.32e-36FFCP PHASE1:Hg19::chr2:31607762..31607771,-#_1199e488c3f39536ebfb4250ffffc311p@chr2:31607762..31607771, -
1.21e-35FFCP PHASE1:Hg19::chr9:114557207..114557230,-#_044b223688986677b359d23fd7002451p1@C9orf84
1.21e-35FFCP PHASE2:Hg19::chr9:114557207..114557230,-#_044b223688986677b359d23fd7002451p1@C9orf84
1.94e-35FFCP PHASE2:Hg19::chr9:114490545..114490560,-#_5c68c6f995d9be823523678196e6fc9bp@chr9:114490545..114490560, -
1.94e-35FFCP PHASE1:Hg19::chr9:114490545..114490560,-#_5c68c6f995d9be823523678196e6fc9bp@chr9:114490545..114490560, -
7.61e-35FFCP PHASE1:Hg19::chr7:20257377..20257401,+#_c327a8b227cfeb97f308ba091041f838p@chr7:20257377..20257401, +
7.61e-35FFCP PHASE2:Hg19::chr7:20257377..20257401,+#_c327a8b227cfeb97f308ba091041f838p@chr7:20257377..20257401, +
8.78e-35FFCP PHASE2:Hg19::chr8:128306991..128307011,-#_618dd919432a81f55977d57cf33280e8p@chr8:128306991..128307011, -
8.78e-35FFCP PHASE1:Hg19::chr8:128306991..128307011,-#_618dd919432a81f55977d57cf33280e8p@chr8:128306991..128307011, -
1.37e-34FFCP PHASE2:Hg19::chr20:10400400..10400411,-#_3185c340795232145fa6c5eecd823475p@chr20:10400400..10400411, -
1.37e-34FFCP PHASE1:Hg19::chr20:10400400..10400411,-#_3185c340795232145fa6c5eecd823475p@chr20:10400400..10400411, -
2.01e-34FFCP PHASE1:Hg19::chr14:51955719..51955733,+#_4d043a1cb77b81d671a2dc772ae25e3dp15@FRMD6
2.01e-34FFCP PHASE2:Hg19::chr14:51955719..51955733,+#_4d043a1cb77b81d671a2dc772ae25e3dp15@FRMD6
2.93e-34FFCP PHASE1:Hg19::chr11:393795..393799,-#_836367bb83e89f56fcf6ea98b8f8788bp@chr11:393795..393799, -
2.93e-34FFCP PHASE2:Hg19::chr11:393795..393799,-#_836367bb83e89f56fcf6ea98b8f8788bp@chr11:393795..393799, -
5.36e-34FFCP PHASE1:Hg19::chr6:10413321..10413336,+#_a5a787417d03f31a43dd9a5a7f3ff8d0p@chr6:10413321..10413336, +
5.36e-34FFCP PHASE2:Hg19::chr6:10413321..10413336,+#_a5a787417d03f31a43dd9a5a7f3ff8d0p@chr6:10413321..10413336, +
5.82e-34FFCP PHASE2:Hg19::chr1:115212619..115212636,-#_df5301802dee0af248309d77f6d2a502p2@DENND2C
5.82e-34FFCP PHASE1:Hg19::chr1:115212619..115212636,-#_df5301802dee0af248309d77f6d2a502p2@DENND2C
6.3e-34FFCP PHASE1:Hg19::chr10:105796014..105796053,-#_1ac878cd21cfe298ed71a0123bf9fe04p@chr10:105796014..105796053, -
6.3e-34FFCP PHASE2:Hg19::chr10:105796014..105796053,-#_1ac878cd21cfe298ed71a0123bf9fe04p@chr10:105796014..105796053, -
8.11e-34FFCP PHASE2:Hg19::chr11:57558973..57558988,+#_57a9dae3f05b647e99be0947879a05bfp11@CTNND1
8.11e-34FFCP PHASE1:Hg19::chr11:57558973..57558988,+#_57a9dae3f05b647e99be0947879a05bfp11@CTNND1
1.5e-33FFCP PHASE2:Hg19::chr6:43423785..43423800,-#_ed5a0c8ca5052376e0db5233420b3b61p3@DLK2
1.5e-33FFCP PHASE1:Hg19::chr6:43423785..43423800,-#_ed5a0c8ca5052376e0db5233420b3b61p3@DLK2
7.55e-33FFCP PHASE1:Hg19::chr15:79296820..79296829,-#_564017d51f8b04dbe247167f28d8556dp@chr15:79296820..79296829, -
7.55e-33FFCP PHASE2:Hg19::chr15:79296820..79296829,-#_564017d51f8b04dbe247167f28d8556dp@chr15:79296820..79296829, -
1.14e-32FFCP PHASE1:Hg19::chr12:47628434..47628438,+#_420090b0c9a6d1ef053e5b5eaa0999acp1@CU678929
1.14e-32FFCP PHASE2:Hg19::chr12:47628434..47628438,+#_420090b0c9a6d1ef053e5b5eaa0999acp1@CU678929
1.46e-32FFCP PHASE2:Hg19::chr17:76628163..76628174,-#_9b730dc416b636b27924a4a049186966p@chr17:76628163..76628174, -
1.46e-32FFCP PHASE1:Hg19::chr17:76628163..76628174,-#_9b730dc416b636b27924a4a049186966p@chr17:76628163..76628174, -
1.46e-32FFCP PHASE1:Hg19::chr12:52525577..52525579,-#_9b730dc416b636b27924a4a049186966p@chr12:52525577..52525579, -
1.46e-32FFCP PHASE2:Hg19::chr12:52525577..52525579,-#_9b730dc416b636b27924a4a049186966p@chr12:52525577..52525579, -
1.46e-32FFCP PHASE2:Hg19::chr20:10750941..10750951,+#_9b730dc416b636b27924a4a049186966p@chr20:10750941..10750951, +
1.46e-32FFCP PHASE1:Hg19::chr20:10750941..10750951,+#_9b730dc416b636b27924a4a049186966p@chr20:10750941..10750951, +