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DOID:305

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Name:carcinoma
Namespace:FANTOM
Definition:"A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from epithelial cells." [url:http://en.wikipedia.org/wiki/Carcinoma]
Xrefs:
links:

MSH:D002277
NCI:C2916
SNOMEDCT_2010_1_31:118285006
SNOMEDCT_2010_1_31:134207000
SNOMEDCT_2010_1_31:154433003
SNOMEDCT_2010_1_31:188083002
SNOMEDCT_2010_1_31:189546004
SNOMEDCT_2010_1_31:189549006
SNOMEDCT_2010_1_31:189559007
SNOMEDCT_2010_1_31:269513004
SNOMEDCT_2010_1_31:68453008
SNOMEDCT_2010_1_31:71298006
UMLS_CUI:C0007097
UMLS_CUI:C0553707

UMLS_CUI:C1368683
Synonyms: "carcinoma" EXACT [CSP2005:2000-1867]
"epithelioma" EXACT [CSP2005:2000-5801]
"Epithelioma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:71298006]
"malignant Epithelioma" EXACT [NCI2004_11_17:C6927]
"malignant epithelioma" EXACT []
Alt_id: DOID:2428
DOID:6570

Ontology association

Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.



link to ontology dataset


data

Parents

is_a:DOID:0050687(cell type cancer)



Children


is a:DOID:1749 (squamous cell carcinoma),DOID:2671 (transitional cell carcinoma),DOID:299 (adenocarcinoma),DOID:5662 (pleomorphic carcinoma)


Ontology Tree: Loaded from BioPortal

FF samples

Human (Homo sapiens) Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with DOID:305 (carcinoma), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

P-valueFFCPShort description
2.94e-66FFCP PHASE2:Hg19::chr8:120221345..120221393,+#_e480e569f91ec859ccc67477be22025ep3@MAL2
2.94e-66FFCP PHASE1:Hg19::chr8:120221345..120221393,+#_e480e569f91ec859ccc67477be22025ep3@MAL2
9.17e-60FFCP PHASE2:Hg19::chr12:20975472..20975489,+#_fcb0c02bd1e339b5688b0e10779dba35p@chr12:20975472..20975489, +
9.17e-60FFCP PHASE1:Hg19::chr12:20975472..20975489,+#_fcb0c02bd1e339b5688b0e10779dba35p@chr12:20975472..20975489, +
6.95e-59FFCP PHASE1:Hg19::chr12:20975516..20975562,+#_bdfa9473d5032d75d03713599aca4f37p@chr12:20975516..20975562, +
6.95e-59FFCP PHASE2:Hg19::chr12:20975516..20975562,+#_bdfa9473d5032d75d03713599aca4f37p@chr12:20975516..20975562, +
2.8e-56FFCP PHASE1:Hg19::chr7:1595871..1595896,-#_71d7cc501bf27d8001283a623322f3ecp5@TMEM184A
2.8e-56FFCP PHASE2:Hg19::chr7:1595871..1595896,-#_71d7cc501bf27d8001283a623322f3ecp5@TMEM184A
2.92e-53FFCP PHASE2:Hg19::chr7:1595831..1595858,-#_878af2c488301f49eada36c0e8b5afd0p1@TMEM184A
2.92e-53FFCP PHASE1:Hg19::chr7:1595831..1595858,-#_878af2c488301f49eada36c0e8b5afd0p1@TMEM184A
8.91e-53FFCP PHASE2:Hg19::chr7:1595804..1595828,-#_d845ef4132d88c5f07cadd26d32f2c9fp3@TMEM184A
8.91e-53FFCP PHASE1:Hg19::chr7:1595804..1595828,-#_d845ef4132d88c5f07cadd26d32f2c9fp3@TMEM184A
1.09e-51FFCP PHASE1:Hg19::chr3:194040598..194040638,-#_7c92ddf661dc715e4a604608f6386aa1p@chr3:194040598..194040638, -
1.09e-51FFCP PHASE2:Hg19::chr3:194040598..194040638,-#_7c92ddf661dc715e4a604608f6386aa1p@chr3:194040598..194040638, -
1.28e-51FFCP PHASE2:Hg19::chr8:120221313..120221336,+#_7e8f458d77c9783e1f62002c0d68a125p5@MAL2
1.28e-51FFCP PHASE1:Hg19::chr8:120221313..120221336,+#_7e8f458d77c9783e1f62002c0d68a125p5@MAL2
3.28e-51FFCP PHASE2:Hg19::chr2:174562443..174562467,+#_af57c25d778f6f7ebab0f0600bea7112p@chr2:174562443..174562467, +
3.28e-51FFCP PHASE1:Hg19::chr2:174562443..174562467,+#_af57c25d778f6f7ebab0f0600bea7112p@chr2:174562443..174562467, +
5.99e-49FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_20ded271638bde6fa09fa1ff34d51927p1@FOXA1
5.99e-49FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_20ded271638bde6fa09fa1ff34d51927p1@FOXA1
1.76e-48FFCP PHASE1:Hg19::chr17:62770351..62770363,-#_9f6f90c81ff99c6ed20874b40bb98d77p@chr17:62770351..62770363, -
1.76e-48FFCP PHASE2:Hg19::chr17:62770351..62770363,-#_9f6f90c81ff99c6ed20874b40bb98d77p@chr17:62770351..62770363, -
2.63e-48FFCP PHASE1:Hg19::chr3:180707436..180707451,-#_375c94b527e250eb5d0456f0aca98093p2@DNAJC19
2.63e-48FFCP PHASE2:Hg19::chr3:180707436..180707451,-#_375c94b527e250eb5d0456f0aca98093p2@DNAJC19
2.8e-48FFCP PHASE2:Hg19::chr13:109917833..109917866,+#_049233a4db39cac49b7151a7bd4367bcp@chr13:109917833..109917866, +
2.8e-48FFCP PHASE1:Hg19::chr13:109917833..109917866,+#_049233a4db39cac49b7151a7bd4367bcp@chr13:109917833..109917866, +
3.23e-48FFCP PHASE1:Hg19::chr22:46022320..46022366,-#_a95c39af65aa24fc15fdbcae1992e6a8p@chr22:46022320..46022366, -
3.23e-48FFCP PHASE2:Hg19::chr22:46022320..46022366,-#_a95c39af65aa24fc15fdbcae1992e6a8p@chr22:46022320..46022366, -
3.94e-47FFCP PHASE2:Hg19::chr2:54784868..54784919,+#_021dec0a050cd2ca35da1c228f95d518p@chr2:54784868..54784919, +
3.94e-47FFCP PHASE1:Hg19::chr2:54784868..54784919,+#_021dec0a050cd2ca35da1c228f95d518p@chr2:54784868..54784919, +
4.99e-47FFCP PHASE2:Hg19::chr15:56311466..56311511,+#_1f47ea5a32af89e31db11ae26e4bd5c3p@chr15:56311466..56311511, +
4.99e-47FFCP PHASE1:Hg19::chr15:56311466..56311511,+#_1f47ea5a32af89e31db11ae26e4bd5c3p@chr15:56311466..56311511, +
6.38e-47FFCP PHASE1:Hg19::chr1:201979743..201979762,+#_13f3578cd46f9b4bbaa2cdb2d12cd4e1p1@ELF3
6.38e-47FFCP PHASE2:Hg19::chr1:201979743..201979762,+#_13f3578cd46f9b4bbaa2cdb2d12cd4e1p1@ELF3
9.96e-47FFCP PHASE1:Hg19::chr12:52585765..52585777,-#_efa21879bce925e5595dbaace2b67314p2@KRT80
9.96e-47FFCP PHASE2:Hg19::chr12:52585765..52585777,-#_efa21879bce925e5595dbaace2b67314p2@KRT80
3.03e-46FFCP PHASE1:Hg19::chr8:120255687..120255760,+#_0eb69a148f501989b2385c7c3def1068p4@MAL2
3.03e-46FFCP PHASE2:Hg19::chr8:120255687..120255760,+#_0eb69a148f501989b2385c7c3def1068p4@MAL2
5.42e-46FFCP PHASE2:Hg19::chr17:43503012..43503035,-#_55a87ec3d200160bedf51b4acb7e66b4p4@ARHGAP27
5.42e-46FFCP PHASE1:Hg19::chr17:43503012..43503035,-#_55a87ec3d200160bedf51b4acb7e66b4p4@ARHGAP27
1.07e-45FFCP PHASE2:Hg19::chr7:101917482..101917507,+#_59ca8e45a1711fd4f1d1d3a081ba3d4cp6@CUX1
1.07e-45FFCP PHASE1:Hg19::chr7:101917482..101917507,+#_59ca8e45a1711fd4f1d1d3a081ba3d4cp6@CUX1
1.42e-45FFCP PHASE2:Hg19::chr8:82644562..82644654,-#_508267ec1f3070b233f7c0115aa02cacp2@ZFAND1
1.42e-45FFCP PHASE1:Hg19::chr8:82644562..82644654,-#_508267ec1f3070b233f7c0115aa02cacp2@ZFAND1
2.28e-45FFCP PHASE1:Hg19::chr7:156803329..156803362,-#_39341b5cc32859293639d51a7ed0c4d2p1@MNX1
2.28e-45FFCP PHASE2:Hg19::chr7:156803329..156803362,-#_39341b5cc32859293639d51a7ed0c4d2p1@MNX1
2.88e-45FFCP PHASE1:Hg19::chr19:751122..751139,+#_dbd6dd1ac90a2099b1b6493b61a48ab9p1@C19orf21
2.88e-45FFCP PHASE2:Hg19::chr19:751122..751139,+#_dbd6dd1ac90a2099b1b6493b61a48ab9p1@C19orf21
1.72e-44FFCP PHASE2:Hg19::chr18:47376197..47376227,-#_133d5611df0592e4ad194f9ec3bd6718p2@MYO5B
1.72e-44FFCP PHASE1:Hg19::chr18:47376197..47376227,-#_133d5611df0592e4ad194f9ec3bd6718p2@MYO5B
2.93e-44FFCP PHASE1:Hg19::chr7:101917447..101917479,+#_b22ba3a60cf2998eaf25e2cfa7d60084p4@CUX1
2.93e-44FFCP PHASE2:Hg19::chr7:101917447..101917479,+#_b22ba3a60cf2998eaf25e2cfa7d60084p4@CUX1
1.26e-43FFCP PHASE2:Hg19::chr2:238499725..238499747,-#_24fd32b30a2a87f657a6f0bdf2bfa41dp2@RAB17
1.26e-43FFCP PHASE1:Hg19::chr2:238499725..238499747,-#_24fd32b30a2a87f657a6f0bdf2bfa41dp2@RAB17
1.31e-43FFCP PHASE1:Hg19::chr8:144821696..144821778,+#_cdea6a11277b81b841725508db2f0083p@chr8:144821696..144821778, +
1.31e-43FFCP PHASE2:Hg19::chr8:144821696..144821778,+#_cdea6a11277b81b841725508db2f0083p@chr8:144821696..144821778, +
1.5e-43FFCP PHASE1:Hg19::chr2:32264532..32264584,-#_4d1f41d3be2d66731677b437d1f45cefp@chr2:32264532..32264584, -
1.5e-43FFCP PHASE2:Hg19::chr2:32264532..32264584,-#_4d1f41d3be2d66731677b437d1f45cefp@chr2:32264532..32264584, -
3.61e-43FFCP PHASE1:Hg19::chr19:751104..751121,+#_5b2c8139a3dbdeed10de8b692c1346d2p2@C19orf21
3.61e-43FFCP PHASE2:Hg19::chr19:751104..751121,+#_5b2c8139a3dbdeed10de8b692c1346d2p2@C19orf21
4.96e-43FFCP PHASE2:Hg19::chr1:45988542..45988573,-#_041d87225f7d7b940e5002a8b4cb209cp2@PRDX1
4.96e-43FFCP PHASE1:Hg19::chr1:45988542..45988573,-#_041d87225f7d7b940e5002a8b4cb209cp2@PRDX1
7.6e-43FFCP PHASE2:Hg19::chr11:66139128..66139152,-#_0e5d62a735fe011282d84870a8be52a5p3@SLC29A2
7.6e-43FFCP PHASE1:Hg19::chr11:66139128..66139152,-#_0e5d62a735fe011282d84870a8be52a5p3@SLC29A2
1.26e-42FFCP PHASE2:Hg19::chr11:66139068..66139120,-#_4d8a36590aad95a87ed708df3a2c5d52p2@SLC29A2
1.26e-42FFCP PHASE1:Hg19::chr11:66139068..66139120,-#_4d8a36590aad95a87ed708df3a2c5d52p2@SLC29A2
1.76e-42FFCP PHASE2:Hg19::chr8:82644522..82644557,-#_f39c194436783e991b1b9a4bc74956fap4@ZFAND1
1.76e-42FFCP PHASE1:Hg19::chr8:82644522..82644557,-#_f39c194436783e991b1b9a4bc74956fap4@ZFAND1
3.06e-42FFCP PHASE2:Hg19::chr13:114103443..114103479,-#_3849c4e9bfdd0ab1c3f25154664844f0p2@ADPRHL1
3.06e-42FFCP PHASE1:Hg19::chr13:114103443..114103479,-#_3849c4e9bfdd0ab1c3f25154664844f0p2@ADPRHL1
3.8e-42FFCP PHASE2:Hg19::chr12:50419141..50419170,-#_e10f6273148938f42a15f4c0a71686d5p2@RACGAP1
3.8e-42FFCP PHASE1:Hg19::chr12:50419141..50419170,-#_e10f6273148938f42a15f4c0a71686d5p2@RACGAP1
5.75e-42FFCP PHASE1:Hg19::chr1:45988484..45988500,-#_8f7f788782bd8345ddfdfc9dac03b113p4@PRDX1
5.75e-42FFCP PHASE2:Hg19::chr1:45988484..45988500,-#_8f7f788782bd8345ddfdfc9dac03b113p4@PRDX1
6.17e-42FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_0033052dcadf7cda6a30dc03d05d7ac7p@chr16:68260798..68260800, -
6.17e-42FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_0033052dcadf7cda6a30dc03d05d7ac7p@chr16:68260798..68260800, -
8.38e-42FFCP PHASE1:Hg19::chr2:47596330..47596380,+#_d4789da7446258fa924a548023761e05p2@EPCAM
8.38e-42FFCP PHASE2:Hg19::chr2:47596330..47596380,+#_d4789da7446258fa924a548023761e05p2@EPCAM
1.09e-41FFCP PHASE1:Hg19::chr7:101917407..101917443,+#_9f587f8983e8c99fa7377c6746c55182p3@CUX1
1.09e-41FFCP PHASE2:Hg19::chr7:101917407..101917443,+#_9f587f8983e8c99fa7377c6746c55182p3@CUX1
1.15e-41FFCP PHASE2:Hg19::chr2:47596394..47596400,+#_773a3f3f2127c58d7291e7c3f21671d9p6@EPCAM
1.15e-41FFCP PHASE1:Hg19::chr2:47596394..47596400,+#_773a3f3f2127c58d7291e7c3f21671d9p6@EPCAM
2.08e-41FFCP PHASE2:Hg19::chr3:53033328..53033357,-#_2830df919bce7af41e737d3220e67913p@chr3:53033328..53033357, -
2.08e-41FFCP PHASE1:Hg19::chr3:53033328..53033357,-#_2830df919bce7af41e737d3220e67913p@chr3:53033328..53033357, -
3.43e-41FFCP PHASE1:Hg19::chr8:82644655..82644687,-#_209e65b69087ec47e4d1c2f9017e6aa8p3@ZFAND1
3.43e-41FFCP PHASE2:Hg19::chr8:82644655..82644687,-#_209e65b69087ec47e4d1c2f9017e6aa8p3@ZFAND1
4.76e-41FFCP PHASE2:Hg19::chr1:201979703..201979721,+#_c845bbb7cd42f7de1946ff5842214d39p2@ELF3
4.76e-41FFCP PHASE1:Hg19::chr1:201979703..201979721,+#_c845bbb7cd42f7de1946ff5842214d39p2@ELF3
5.39e-41FFCP PHASE2:Hg19::chr8:82644741..82644791,+#_72b918b3f4449aaf7b4235608d9ec8b3p2@CHMP4C
5.39e-41FFCP PHASE1:Hg19::chr8:82644741..82644791,+#_72b918b3f4449aaf7b4235608d9ec8b3p2@CHMP4C
5.49e-41FFCP PHASE1:Hg19::chr9:98189097..98189118,-#_3c510afd328e6f8c5c96ba46f3aeca25p1@ENST00000433644
5.49e-41FFCP PHASE2:Hg19::chr9:98189097..98189118,-#_3c510afd328e6f8c5c96ba46f3aeca25p1@ENST00000433644
5.55e-41FFCP PHASE1:Hg19::chr8:120220561..120220650,+#_b14553df922e9ba1cd04f08e03e13a6ap1@MAL2
5.55e-41FFCP PHASE2:Hg19::chr8:120220561..120220650,+#_b14553df922e9ba1cd04f08e03e13a6ap1@MAL2
9.06e-41FFCP PHASE1:Hg19::chr11:394196..394258,+#_ed107df516962fe3412fc56857d65ee8p1@PKP3
9.06e-41FFCP PHASE2:Hg19::chr11:394196..394258,+#_ed107df516962fe3412fc56857d65ee8p1@PKP3
1.5e-40FFCP PHASE2:Hg19::chr1:204347256..204347303,-#_bd22e27dc3669415f0655fd16c55f3d2p1@ENST00000441225
1.5e-40FFCP PHASE1:Hg19::chr1:204347256..204347303,-#_bd22e27dc3669415f0655fd16c55f3d2p1@ENST00000441225
1.69e-40FFCP PHASE2:Hg19::chr22:46373034..46373058,-#_e23edd540ad05e56280a1503f3ff1ac9p1@WNT7B
1.69e-40FFCP PHASE1:Hg19::chr22:46373034..46373058,-#_e23edd540ad05e56280a1503f3ff1ac9p1@WNT7B