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DOID:3095

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Name:germ cell and embryonal cancer
Namespace:FANTOM
Definition:"A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http://en.wikipedia.org/wiki/Germ_cell]
Xrefs:
links:

MSH:D009373

UMLS_CUI:C0027658
Synonyms: "germ cell and embryonal neoplasm" RELATED []

Ontology association
Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.

link to ontology dataset
data


Parents

is_a:DOID:2994(germ cell cancer)



Children


is a:FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15),FF:10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II),DOID:171 (neuroectodermal tumor),DOID:3307 (teratoma)


Ontology Tree: Loaded from BioPortal

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3095 (germ cell and embryonal cancer), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.32e-71FFCP PHASE1:Hg19::chr2:218875465..218875482,-#_196856cbe785a34018e01dee434966b2p@chr2:218875465..218875482, -
2.32e-71FFCP PHASE2:Hg19::chr2:218875465..218875482,-#_196856cbe785a34018e01dee434966b2p@chr2:218875465..218875482, -
7.16e-55FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_9684b00420917aad306c11fc92d7cb80p3@DPPA3
7.16e-55FFCP PHASE2:Hg19::chr2:218875447..218875463,-#_9684b00420917aad306c11fc92d7cb80p@chr2:218875447..218875463, -
7.16e-55FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_9684b00420917aad306c11fc92d7cb80p3@DPPA3
7.16e-55FFCP PHASE1:Hg19::chr2:218875447..218875463,-#_9684b00420917aad306c11fc92d7cb80p@chr2:218875447..218875463, -
6.24e-54FFCP PHASE1:Hg19::chr13:31590717..31590730,-#_50495cb259de7313ea7000165dd04810p@chr13:31590717..31590730, -
6.24e-54FFCP PHASE2:Hg19::chr8:12808720..12808732,+#_50495cb259de7313ea7000165dd04810p19@KIAA1456
6.24e-54FFCP PHASE2:Hg19::chr13:31590717..31590730,-#_50495cb259de7313ea7000165dd04810p@chr13:31590717..31590730, -
6.24e-54FFCP PHASE1:Hg19::chr8:12808720..12808732,+#_50495cb259de7313ea7000165dd04810p19@KIAA1456
5.21e-52FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_d48b1ce421275662d8b863323e1cf81dp2@DPPA3
5.21e-52FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_d48b1ce421275662d8b863323e1cf81dp2@DPPA3
2.88e-46FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_3efff86990685a0ec2e8f31ebca3a8cfp3@TRIM60
2.88e-46FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_3efff86990685a0ec2e8f31ebca3a8cfp3@TRIM60
3.12e-46FFCP PHASE1:Hg19::chr3:5932149..5932178,+#_ee8d7106f0835fe49f2f6e372a2ccba7p@chr3:5932149..5932178, +
3.12e-46FFCP PHASE1:Hg19::chrX:51361761..51361770,-#_ee8d7106f0835fe49f2f6e372a2ccba7p2@ENST00000417339
3.12e-46FFCP PHASE2:Hg19::chrX:51361761..51361770,-#_ee8d7106f0835fe49f2f6e372a2ccba7p2@ENST00000417339
3.12e-46FFCP PHASE2:Hg19::chr3:5932149..5932178,+#_ee8d7106f0835fe49f2f6e372a2ccba7p@chr3:5932149..5932178, +
3.37e-46FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_f230e3494bd9a0f5b07607871d9e2a83p4@DNMT3L
3.37e-46FFCP PHASE2:Hg19::chr20:4228201..4228214,+#_f230e3494bd9a0f5b07607871d9e2a83p@chr20:4228201..4228214, +
3.37e-46FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_f230e3494bd9a0f5b07607871d9e2a83p4@DNMT3L
3.37e-46FFCP PHASE1:Hg19::chr20:4228201..4228214,+#_f230e3494bd9a0f5b07607871d9e2a83p@chr20:4228201..4228214, +
3.65e-46FFCP PHASE1:Hg19::chr9:15883095..15883109,+#_1b942a63ff30fc81c2d43961190487c6p@chr9:15883095..15883109, +
3.65e-46FFCP PHASE2:Hg19::chr9:15883095..15883109,+#_1b942a63ff30fc81c2d43961190487c6p@chr9:15883095..15883109, +
3.65e-46FFCP PHASE1:Hg19::chr20:4228155..4228166,+#_1b942a63ff30fc81c2d43961190487c6p@chr20:4228155..4228166, +
3.65e-46FFCP PHASE2:Hg19::chr20:4228155..4228166,+#_1b942a63ff30fc81c2d43961190487c6p@chr20:4228155..4228166, +
3.95e-46FFCP PHASE1:Hg19::chr9:15883050..15883085,+#_be2aa6fc998329401e62b3751d9776e4p@chr9:15883050..15883085, +
3.95e-46FFCP PHASE2:Hg19::chr9:15883050..15883085,+#_be2aa6fc998329401e62b3751d9776e4p@chr9:15883050..15883085, +
3.09e-45FFCP PHASE2:Hg19::chr19:50016671..50016675,+#_4be113b14f99a964bb256c967baa6fb8p22@FCGRT
3.09e-45FFCP PHASE2:Hg19::chr1:27385778..27385789,+#_4be113b14f99a964bb256c967baa6fb8p@chr1:27385778..27385789, +
3.09e-45FFCP PHASE1:Hg19::chr11:83436107..83436115,-#_4be113b14f99a964bb256c967baa6fb8p46@DLG2
3.09e-45FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_4be113b14f99a964bb256c967baa6fb8p2@A2ML1-AS1
3.09e-45FFCP PHASE2:Hg19::chr17:31618260..31618271,+#_4be113b14f99a964bb256c967baa6fb8p@chr17:31618260..31618271, +
3.09e-45FFCP PHASE2:Hg19::chr2:218876066..218876078,-#_4be113b14f99a964bb256c967baa6fb8p@chr2:218876066..218876078, -
3.09e-45FFCP PHASE1:Hg19::chr2:218876066..218876078,-#_4be113b14f99a964bb256c967baa6fb8p@chr2:218876066..218876078, -
3.09e-45FFCP PHASE2:Hg19::chr3:8407443..8407453,-#_4be113b14f99a964bb256c967baa6fb8p@chr3:8407443..8407453, -
3.09e-45FFCP PHASE1:Hg19::chr5:133764015..133764029,+#_4be113b14f99a964bb256c967baa6fb8p@chr5:133764015..133764029, +
3.09e-45FFCP PHASE1:Hg19::chr3:8407443..8407453,-#_4be113b14f99a964bb256c967baa6fb8p@chr3:8407443..8407453, -
3.09e-45FFCP PHASE2:Hg19::chr11:83436107..83436115,-#_4be113b14f99a964bb256c967baa6fb8p46@DLG2
3.09e-45FFCP PHASE2:Hg19::chr1:155804376..155804383,-#_4be113b14f99a964bb256c967baa6fb8-, p@chr1:155804376..155804383
3.09e-45FFCP PHASE1:Hg19::chr19:50016671..50016675,+#_4be113b14f99a964bb256c967baa6fb8p22@FCGRT
3.09e-45FFCP PHASE1:Hg19::chr1:27385778..27385789,+#_4be113b14f99a964bb256c967baa6fb8p@chr1:27385778..27385789, +
3.09e-45FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_4be113b14f99a964bb256c967baa6fb8p2@A2ML1-AS1
3.09e-45FFCP PHASE1:Hg19::chr1:155804376..155804383,-#_4be113b14f99a964bb256c967baa6fb8p@chr1:155804376..155804383, -
3.09e-45FFCP PHASE2:Hg19::chr11:18665025..18665064,+#_4be113b14f99a964bb256c967baa6fb8p@chr11:18665025..18665064, +
3.09e-45FFCP PHASE1:Hg19::chr11:18665025..18665064,+#_4be113b14f99a964bb256c967baa6fb8p@chr11:18665025..18665064, +
3.09e-45FFCP PHASE1:Hg19::chr17:31618260..31618271,+#_4be113b14f99a964bb256c967baa6fb8p@chr17:31618260..31618271, +
3.09e-45FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_4be113b14f99a964bb256c967baa6fb8p@chr5:133764015..133764029, +
6.61e-44FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_150616f2c68123c48d7926a72a3662a6p2@DNMT3L
6.61e-44FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_150616f2c68123c48d7926a72a3662a6p2@DNMT3L
1.63e-40FFCP PHASE2:Hg19::chr8:12808701..12808712,+#_c076f90fc260939ad3cdbad776061897p16@KIAA1456
1.63e-40FFCP PHASE1:Hg19::chr1:60314016..60314043,+#_c076f90fc260939ad3cdbad776061897p@chr1:60314016..60314043, +
1.63e-40FFCP PHASE1:Hg19::chr8:12808701..12808712,+#_c076f90fc260939ad3cdbad776061897p16@KIAA1456
1.63e-40FFCP PHASE2:Hg19::chr1:60314016..60314043,+#_c076f90fc260939ad3cdbad776061897p@chr1:60314016..60314043, +
1.87e-40FFCP PHASE2:Hg19::chr2:230804505..230804520,-#_2bae812bba9c016377d02a1f63bdda5ap@chr2:230804505..230804520, -
1.87e-40FFCP PHASE1:Hg19::chr2:230804505..230804520,-#_2bae812bba9c016377d02a1f63bdda5ap@chr2:230804505..230804520, -
5.93e-40FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_4fe6e9a18ce542a2b96c571fb125aaeap1@DNMT3L
5.93e-40FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_4fe6e9a18ce542a2b96c571fb125aaeap1@DNMT3L
7.05e-38FFCP PHASE2:Hg19::chr2:207068264..207068271,+#_46d7de680486c4edf504f12656a99899p@chr2:207068264..207068271, +
7.05e-38FFCP PHASE1:Hg19::chr2:207068264..207068271,+#_46d7de680486c4edf504f12656a99899p@chr2:207068264..207068271, +
8.52e-38FFCP PHASE1:Hg19::chr12:4128088..4128115,+#_17e8ab6e793acb3652556dfdfd1022d6p@chr12:4128088..4128115, +
8.52e-38FFCP PHASE1:Hg19::chr5:36596685..36596706,+#_17e8ab6e793acb3652556dfdfd1022d6p@chr5:36596685..36596706, +
8.52e-38FFCP PHASE2:Hg19::chrX:19141065..19141080,-#_17e8ab6e793acb3652556dfdfd1022d6p3@GPR64
8.52e-38FFCP PHASE1:Hg19::chrX:19141065..19141080,-#_17e8ab6e793acb3652556dfdfd1022d6p3@GPR64
8.52e-38FFCP PHASE2:Hg19::chr5:36596685..36596706,+#_17e8ab6e793acb3652556dfdfd1022d6p@chr5:36596685..36596706, +
8.52e-38FFCP PHASE2:Hg19::chr12:4128088..4128115,+#_17e8ab6e793acb3652556dfdfd1022d6p@chr12:4128088..4128115, +
8.52e-38FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_17e8ab6e793acb3652556dfdfd1022d6p1@A2ML1-AS1
8.52e-38FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_17e8ab6e793acb3652556dfdfd1022d6p1@A2ML1-AS1
9.2e-38FFCP PHASE2:Hg19::chr2:216410925..216410936,+#_5d7c79602fdf362eece5f42c0e16ff24p1@ENST00000417485
9.2e-38FFCP PHASE2:Hg19::chr6:123318989..123318999,+#_5d7c79602fdf362eece5f42c0e16ff24p@chr6:123318989..123318999, +
9.2e-38FFCP PHASE1:Hg19::chr6:123318989..123318999,+#_5d7c79602fdf362eece5f42c0e16ff24p@chr6:123318989..123318999, +
9.2e-38FFCP PHASE2:Hg19::chr8:27046735..27046767,-#_5d7c79602fdf362eece5f42c0e16ff24p@chr8:27046735..27046767, -
9.2e-38FFCP PHASE2:Hg19::chr19:49714057..49714062,+#_5d7c79602fdf362eece5f42c0e16ff24p@chr19:49714057..49714062, +
9.2e-38FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_5d7c79602fdf362eece5f42c0e16ff24p1@TRIM60
9.2e-38FFCP PHASE1:Hg19::chr19:49714057..49714062,+#_5d7c79602fdf362eece5f42c0e16ff24p@chr19:49714057..49714062, +
9.2e-38FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_5d7c79602fdf362eece5f42c0e16ff24p1@TRIM60
9.2e-38FFCP PHASE1:Hg19::chr2:216410925..216410936,+#_5d7c79602fdf362eece5f42c0e16ff24p1@ENST00000417485
9.2e-38FFCP PHASE1:Hg19::chr8:27046735..27046767,-#_5d7c79602fdf362eece5f42c0e16ff24p@chr8:27046735..27046767, -
9.92e-38FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_e2478132068f7cc036c4213cb6347cdbp2@TRIM60
9.92e-38FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_e2478132068f7cc036c4213cb6347cdbp2@TRIM60
1.07e-37FFCP PHASE1:Hg19::chr3:99982282..99982305,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr3:99982282..99982305, +
1.07e-37FFCP PHASE1:Hg19::chr9:15883133..15883144,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr9:15883133..15883144, +
1.07e-37FFCP PHASE2:Hg19::chr9:15883133..15883144,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr9:15883133..15883144, +
1.07e-37FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr3:9895464..9895477, -
1.07e-37FFCP PHASE2:Hg19::chr3:99982282..99982305,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr3:99982282..99982305, +
1.07e-37FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr3:9895464..9895477, -
1.16e-37FFCP PHASE1:Hg19::chr4:8068231..8068247,+#_0ab722df1c7737afd63de1868dc439b5p1@ENST00000510640
1.16e-37FFCP PHASE2:Hg19::chr4:8068231..8068247,+#_0ab722df1c7737afd63de1868dc439b5p1@ENST00000510640
1.49e-36FFCP PHASE2:Hg19::chr19:46003056..46003067,+#_299b237c91a58560df578a261ec29545p11@PPM1N
1.49e-36FFCP PHASE2:Hg19::chr21:27478934..27478945,-#_299b237c91a58560df578a261ec29545p@chr21:27478934..27478945, -
1.49e-36FFCP PHASE2:Hg19::chr7:123674206..123674214,-#_299b237c91a58560df578a261ec29545p@chr7:123674206..123674214, -
1.49e-36FFCP PHASE2:Hg19::chr16:8627066..8627076,+#_299b237c91a58560df578a261ec29545p@chr16:8627066..8627076, +
1.49e-36FFCP PHASE1:Hg19::chr1:38709054..38709062,+#_299b237c91a58560df578a261ec29545p@chr1:38709054..38709062, +
1.49e-36FFCP PHASE1:Hg19::chr1:236888019..236888038,+#_299b237c91a58560df578a261ec29545p@chr1:236888019..236888038, +
1.49e-36FFCP PHASE1:Hg19::chr8:27041862..27041872,+#_299b237c91a58560df578a261ec29545p1@ENST00000521408
1.49e-36FFCP PHASE2:Hg19::chr2:233989556..233989568,+#_299b237c91a58560df578a261ec29545p@chr2:233989556..233989568, +
1.49e-36FFCP PHASE1:Hg19::chr6:35511496..35511503,+#_299b237c91a58560df578a261ec29545p@chr6:35511496..35511503, +
1.49e-36FFCP PHASE1:Hg19::chr7:2309320..2309348,-#_299b237c91a58560df578a261ec29545-, p@chr7:2309320..2309348
1.49e-36FFCP PHASE2:Hg19::chr16:9069001..9069012,-#_299b237c91a58560df578a261ec29545p@chr16:9069001..9069012, -
1.49e-36FFCP PHASE2:Hg19::chr19:51883879..51883908,-#_299b237c91a58560df578a261ec29545-, p@chr19:51883879..51883908