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DOID:2994

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Name:germ cell cancer
Namespace:FANTOM
Definition:"A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from germ cells." [url:http://en.wikipedia.org/wiki/Germ_cell_tumor]
Xrefs:
links:

MSH:D009373
NCI:C3708
SNOMEDCT_2010_1_31:115233005
SNOMEDCT_2010_1_31:189839002
SNOMEDCT_2010_1_31:189854008
SNOMEDCT_2010_1_31:28307001
SNOMEDCT_2010_1_31:302853003
SNOMEDCT_2010_1_31:402878003

UMLS_CUI:C0205851
Synonyms: "germ cell neoplasm" RELATED [CSP2005:2016-0850]
"germ cell tumour" RELATED [SNOMEDCT_2005_07_31:28307001]
"malignant tumor of the germ cell" EXACT [NCI2004_11_17:C4925]
Alt_id: DOID:2157

Ontology association
Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.

link to ontology dataset
data


Parents

is_a:DOID:0050687(cell type cancer)



Children


is a:DOID:3095 (germ cell and embryonal cancer),DOID:688 (embryonal cancer)


Ontology Tree: Loaded from BioPortal

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:2994 (germ cell cancer), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.32e-71FFCP PHASE2:Hg19::chr2:218875465..218875482,-#_792ec969c8a43ff610526b83b8e825a5p@chr2:218875465..218875482, -
2.32e-71FFCP PHASE1:Hg19::chr2:218875465..218875482,-#_792ec969c8a43ff610526b83b8e825a5p@chr2:218875465..218875482, -
7.16e-55FFCP PHASE2:Hg19::chr2:218875447..218875463,-#_2959a6f8aeeccaeafe9b4cf4acc7e188p@chr2:218875447..218875463, -
7.16e-55FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_2959a6f8aeeccaeafe9b4cf4acc7e188p3@DPPA3
7.16e-55FFCP PHASE1:Hg19::chr2:218875447..218875463,-#_2959a6f8aeeccaeafe9b4cf4acc7e188p@chr2:218875447..218875463, -
7.16e-55FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_2959a6f8aeeccaeafe9b4cf4acc7e188p3@DPPA3
6.24e-54FFCP PHASE2:Hg19::chr8:12808720..12808732,+#_9692c0432311da19c08619d9e1b288a1p19@KIAA1456
6.24e-54FFCP PHASE2:Hg19::chr13:31590717..31590730,-#_9692c0432311da19c08619d9e1b288a1p@chr13:31590717..31590730, -
6.24e-54FFCP PHASE1:Hg19::chr8:12808720..12808732,+#_9692c0432311da19c08619d9e1b288a1p19@KIAA1456
6.24e-54FFCP PHASE1:Hg19::chr13:31590717..31590730,-#_9692c0432311da19c08619d9e1b288a1p@chr13:31590717..31590730, -
5.21e-52FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_541e635aedb736b766108c8660c9b362p2@DPPA3
5.21e-52FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_541e635aedb736b766108c8660c9b362p2@DPPA3
2.88e-46FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_2680b343c73462ab5705baeeb80b482fp3@TRIM60
2.88e-46FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_2680b343c73462ab5705baeeb80b482fp3@TRIM60
3.12e-46FFCP PHASE2:Hg19::chr3:5932149..5932178,+#_81899c8daab06eed77fbb537936164e4p@chr3:5932149..5932178, +
3.12e-46FFCP PHASE1:Hg19::chr3:5932149..5932178,+#_81899c8daab06eed77fbb537936164e4p@chr3:5932149..5932178, +
3.12e-46FFCP PHASE1:Hg19::chrX:51361761..51361770,-#_81899c8daab06eed77fbb537936164e4p2@ENST00000417339
3.12e-46FFCP PHASE2:Hg19::chrX:51361761..51361770,-#_81899c8daab06eed77fbb537936164e4p2@ENST00000417339
3.37e-46FFCP PHASE1:Hg19::chr20:4228201..4228214,+#_44da063dba111912358520ea64824898p@chr20:4228201..4228214, +
3.37e-46FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_44da063dba111912358520ea64824898p4@DNMT3L
3.37e-46FFCP PHASE2:Hg19::chr20:4228201..4228214,+#_44da063dba111912358520ea64824898p@chr20:4228201..4228214, +
3.37e-46FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_44da063dba111912358520ea64824898p4@DNMT3L
3.65e-46FFCP PHASE2:Hg19::chr20:4228155..4228166,+#_f7c06632d1e550677ca3f5ad295926b9p@chr20:4228155..4228166, +
3.65e-46FFCP PHASE1:Hg19::chr9:15883095..15883109,+#_f7c06632d1e550677ca3f5ad295926b9p@chr9:15883095..15883109, +
3.65e-46FFCP PHASE2:Hg19::chr9:15883095..15883109,+#_f7c06632d1e550677ca3f5ad295926b9p@chr9:15883095..15883109, +
3.65e-46FFCP PHASE1:Hg19::chr20:4228155..4228166,+#_f7c06632d1e550677ca3f5ad295926b9p@chr20:4228155..4228166, +
3.95e-46FFCP PHASE1:Hg19::chr9:15883050..15883085,+#_7b76f5a8a669bf717d9c453f0e6c2302p@chr9:15883050..15883085, +
3.95e-46FFCP PHASE2:Hg19::chr9:15883050..15883085,+#_7b76f5a8a669bf717d9c453f0e6c2302p@chr9:15883050..15883085, +
3.09e-45FFCP PHASE2:Hg19::chr11:18665025..18665064,+#_b713067e155cba3f71eed9e30ce9be3ep@chr11:18665025..18665064, +
3.09e-45FFCP PHASE1:Hg19::chr19:50016671..50016675,+#_b713067e155cba3f71eed9e30ce9be3ep22@FCGRT
3.09e-45FFCP PHASE1:Hg19::chr1:27385778..27385789,+#_b713067e155cba3f71eed9e30ce9be3ep@chr1:27385778..27385789, +
3.09e-45FFCP PHASE1:Hg19::chr11:18665025..18665064,+#_b713067e155cba3f71eed9e30ce9be3ep@chr11:18665025..18665064, +
3.09e-45FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_b713067e155cba3f71eed9e30ce9be3ep2@A2ML1-AS1
3.09e-45FFCP PHASE1:Hg19::chr1:155804376..155804383,-#_b713067e155cba3f71eed9e30ce9be3ep@chr1:155804376..155804383, -
3.09e-45FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_b713067e155cba3f71eed9e30ce9be3ep@chr5:133764015..133764029, +
3.09e-45FFCP PHASE1:Hg19::chr17:31618260..31618271,+#_b713067e155cba3f71eed9e30ce9be3ep@chr17:31618260..31618271, +
3.09e-45FFCP PHASE1:Hg19::chr11:83436107..83436115,-#_b713067e155cba3f71eed9e30ce9be3ep46@DLG2
3.09e-45FFCP PHASE2:Hg19::chr19:50016671..50016675,+#_b713067e155cba3f71eed9e30ce9be3ep22@FCGRT
3.09e-45FFCP PHASE2:Hg19::chr1:27385778..27385789,+#_b713067e155cba3f71eed9e30ce9be3ep@chr1:27385778..27385789, +
3.09e-45FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_b713067e155cba3f71eed9e30ce9be3ep2@A2ML1-AS1
3.09e-45FFCP PHASE2:Hg19::chr17:31618260..31618271,+#_b713067e155cba3f71eed9e30ce9be3ep@chr17:31618260..31618271, +
3.09e-45FFCP PHASE2:Hg19::chr2:218876066..218876078,-#_b713067e155cba3f71eed9e30ce9be3ep@chr2:218876066..218876078, -
3.09e-45FFCP PHASE1:Hg19::chr2:218876066..218876078,-#_b713067e155cba3f71eed9e30ce9be3ep@chr2:218876066..218876078, -
3.09e-45FFCP PHASE2:Hg19::chr3:8407443..8407453,-#_b713067e155cba3f71eed9e30ce9be3ep@chr3:8407443..8407453, -
3.09e-45FFCP PHASE1:Hg19::chr5:133764015..133764029,+#_b713067e155cba3f71eed9e30ce9be3ep@chr5:133764015..133764029, +
3.09e-45FFCP PHASE1:Hg19::chr3:8407443..8407453,-#_b713067e155cba3f71eed9e30ce9be3ep@chr3:8407443..8407453, -
3.09e-45FFCP PHASE2:Hg19::chr11:83436107..83436115,-#_b713067e155cba3f71eed9e30ce9be3ep46@DLG2
3.09e-45FFCP PHASE2:Hg19::chr1:155804376..155804383,-#_b713067e155cba3f71eed9e30ce9be3e-, p@chr1:155804376..155804383
6.61e-44FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_67bdca43f8d7e9ac906eefdbfaaef41ep2@DNMT3L
6.61e-44FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_67bdca43f8d7e9ac906eefdbfaaef41ep2@DNMT3L
1.63e-40FFCP PHASE2:Hg19::chr1:60314016..60314043,+#_4fa8d68c26cb7cbae0d0530fd15ca847p@chr1:60314016..60314043, +
1.63e-40FFCP PHASE2:Hg19::chr8:12808701..12808712,+#_4fa8d68c26cb7cbae0d0530fd15ca847p16@KIAA1456
1.63e-40FFCP PHASE1:Hg19::chr1:60314016..60314043,+#_4fa8d68c26cb7cbae0d0530fd15ca847p@chr1:60314016..60314043, +
1.63e-40FFCP PHASE1:Hg19::chr8:12808701..12808712,+#_4fa8d68c26cb7cbae0d0530fd15ca847p16@KIAA1456
1.87e-40FFCP PHASE1:Hg19::chr2:230804505..230804520,-#_3da10ef2a5d5319e8e00f0ec1bb1b82bp@chr2:230804505..230804520, -
1.87e-40FFCP PHASE2:Hg19::chr2:230804505..230804520,-#_3da10ef2a5d5319e8e00f0ec1bb1b82bp@chr2:230804505..230804520, -
5.93e-40FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_929012551c9d721f1ad5d1959766c45fp1@DNMT3L
5.93e-40FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_929012551c9d721f1ad5d1959766c45fp1@DNMT3L
7.05e-38FFCP PHASE1:Hg19::chr2:207068264..207068271,+#_92fadbff56c478e71c22be51ea026eadp@chr2:207068264..207068271, +
7.05e-38FFCP PHASE2:Hg19::chr2:207068264..207068271,+#_92fadbff56c478e71c22be51ea026eadp@chr2:207068264..207068271, +
8.52e-38FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_a9c0299d871d334c4667d2db727eb159p1@A2ML1-AS1
8.52e-38FFCP PHASE1:Hg19::chr5:36596685..36596706,+#_a9c0299d871d334c4667d2db727eb159p@chr5:36596685..36596706, +
8.52e-38FFCP PHASE2:Hg19::chrX:19141065..19141080,-#_a9c0299d871d334c4667d2db727eb159p3@GPR64
8.52e-38FFCP PHASE1:Hg19::chr12:4128088..4128115,+#_a9c0299d871d334c4667d2db727eb159p@chr12:4128088..4128115, +
8.52e-38FFCP PHASE1:Hg19::chrX:19141065..19141080,-#_a9c0299d871d334c4667d2db727eb159p3@GPR64
8.52e-38FFCP PHASE2:Hg19::chr5:36596685..36596706,+#_a9c0299d871d334c4667d2db727eb159p@chr5:36596685..36596706, +
8.52e-38FFCP PHASE2:Hg19::chr12:4128088..4128115,+#_a9c0299d871d334c4667d2db727eb159p@chr12:4128088..4128115, +
8.52e-38FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_a9c0299d871d334c4667d2db727eb159p1@A2ML1-AS1
9.2e-38FFCP PHASE2:Hg19::chr6:123318989..123318999,+#_7857357ea5ff6b71da19ea1abadf0835p@chr6:123318989..123318999, +
9.2e-38FFCP PHASE1:Hg19::chr6:123318989..123318999,+#_7857357ea5ff6b71da19ea1abadf0835p@chr6:123318989..123318999, +
9.2e-38FFCP PHASE2:Hg19::chr2:216410925..216410936,+#_7857357ea5ff6b71da19ea1abadf0835p1@ENST00000417485
9.2e-38FFCP PHASE2:Hg19::chr8:27046735..27046767,-#_7857357ea5ff6b71da19ea1abadf0835p@chr8:27046735..27046767, -
9.2e-38FFCP PHASE2:Hg19::chr19:49714057..49714062,+#_7857357ea5ff6b71da19ea1abadf0835p@chr19:49714057..49714062, +
9.2e-38FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_7857357ea5ff6b71da19ea1abadf0835p1@TRIM60
9.2e-38FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_7857357ea5ff6b71da19ea1abadf0835p1@TRIM60
9.2e-38FFCP PHASE1:Hg19::chr2:216410925..216410936,+#_7857357ea5ff6b71da19ea1abadf0835p1@ENST00000417485
9.2e-38FFCP PHASE1:Hg19::chr8:27046735..27046767,-#_7857357ea5ff6b71da19ea1abadf0835p@chr8:27046735..27046767, -
9.2e-38FFCP PHASE1:Hg19::chr19:49714057..49714062,+#_7857357ea5ff6b71da19ea1abadf0835p@chr19:49714057..49714062, +
9.92e-38FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_341ff79c9a6fa9010ceda41917ac1d5cp2@TRIM60
9.92e-38FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_341ff79c9a6fa9010ceda41917ac1d5cp2@TRIM60
1.07e-37FFCP PHASE1:Hg19::chr3:99982282..99982305,+#_53777f85ba718085ecc504f734d3ebcfp@chr3:99982282..99982305, +
1.07e-37FFCP PHASE1:Hg19::chr9:15883133..15883144,+#_53777f85ba718085ecc504f734d3ebcfp@chr9:15883133..15883144, +
1.07e-37FFCP PHASE2:Hg19::chr9:15883133..15883144,+#_53777f85ba718085ecc504f734d3ebcfp@chr9:15883133..15883144, +
1.07e-37FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_53777f85ba718085ecc504f734d3ebcfp@chr3:9895464..9895477, -
1.07e-37FFCP PHASE2:Hg19::chr3:99982282..99982305,+#_53777f85ba718085ecc504f734d3ebcfp@chr3:99982282..99982305, +
1.07e-37FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_53777f85ba718085ecc504f734d3ebcfp@chr3:9895464..9895477, -
1.16e-37FFCP PHASE1:Hg19::chr4:8068231..8068247,+#_445f612bdbb5112306a96585b5d72d23p1@ENST00000510640
1.16e-37FFCP PHASE2:Hg19::chr4:8068231..8068247,+#_445f612bdbb5112306a96585b5d72d23p1@ENST00000510640
1.49e-36FFCP PHASE2:Hg19::chr1:236888019..236888038,+#_9748383dc5f40129681cc6815b8cda59p@chr1:236888019..236888038, +
1.49e-36FFCP PHASE1:Hg19::chr19:40431284..40431296,-#_9748383dc5f40129681cc6815b8cda59p@chr19:40431284..40431296, -
1.49e-36FFCP PHASE2:Hg19::chr19:40431284..40431296,-#_9748383dc5f40129681cc6815b8cda59p@chr19:40431284..40431296, -
1.49e-36FFCP PHASE2:Hg19::chr8:133637642..133637653,-#_9748383dc5f40129681cc6815b8cda59p6@LRRC6
1.49e-36FFCP PHASE1:Hg19::chr6:2962186..2962206,-#_9748383dc5f40129681cc6815b8cda59p21@SERPINB6
1.49e-36FFCP PHASE2:Hg19::chr13:100951268..100951280,+#_9748383dc5f40129681cc6815b8cda59p@chr13:100951268..100951280, +
1.49e-36FFCP PHASE1:Hg19::chr16:8627066..8627076,+#_9748383dc5f40129681cc6815b8cda59p@chr16:8627066..8627076, +
1.49e-36FFCP PHASE2:Hg19::chr7:2309320..2309348,-#_9748383dc5f40129681cc6815b8cda59p@chr7:2309320..2309348, -
1.49e-36FFCP PHASE2:Hg19::chr10:71696103..71696151,-#_9748383dc5f40129681cc6815b8cda59p@chr10:71696103..71696151, -
1.49e-36FFCP PHASE1:Hg19::chr4:779349..779383,+#_9748383dc5f40129681cc6815b8cda59p@chr4:779349..779383, +
1.49e-36FFCP PHASE1:Hg19::chr6:6032547..6032560,-#_9748383dc5f40129681cc6815b8cda59p@chr6:6032547..6032560, -
1.49e-36FFCP PHASE2:Hg19::chr16:8627043..8627056,+#_9748383dc5f40129681cc6815b8cda59p@chr16:8627043..8627056, +