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UBERON:0001987

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Name:placenta
Namespace:FANTOM
Definition:"organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell." Wikipedia:Placenta
Xrefs:
links:

BTO:0001078
EFO:0001407
EV:0100119
FMA:63934
GAID:379
[1]
[2]
MA:0000386
MAT:0000279
MESH:A.16.759
MIAA:0000279
ncithesaurus:Placenta
OpenCyc:Mx4rvv4zZ5wpEbGdrcN5Y29ycA
SCTID:181455002

VHOG:0001266
Synonyms: "allantoic placenta" EXACT [ISBN10:0073040584]
"eutherian placenta" EXACT []
Comments:Taxon notes: Eutherians: In eutherians, the chorioallantoic membrane of the fetus establishes intimate contact with the adjacent vascular wall of the mother's uterus to produce the placenta, a composite structure formed in part from tissues of the fetus and in part from tissues of the mother [ISBN10:0073040584 "Vertebrates, Kardong"]. TODO - is taxon restriction too strict, even if we restrict def to allantoic placenta? - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002. // See also: doi:10.1002/jmor.11011 // Marsupials possess only a rudimentary placenta, with reduced nutrient and oxygen exchanging capabilities.
Alt_id: UBERON:FMA_63934-MA_0000386-MIAA_0000279
Subset: organ_slim
uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000062(organ),UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0000478(extraembryonic structure),UBERON:0005156(reproductive structure),UBERON:0014404(female anatomical structure)
develops_from:UBERON:0000995(uterus),UBERON:0003124(chorion),UBERON:0004340(allantois)
part_of:UBERON:0000474(female reproductive system),UBERON:0016887(entire extraembryonic component)



Children

derives from:FF:0010021 (human placenta - adult sample),FF:0011381 (mouse placenta- adult pregnant day10 sample),FF:0011384 (mouse placenta- adult pregnant day17 sample),FF:0200028 (hematopoietic stem cell, placenta derived sample)
part of:CL:0002558 (fibroblast of villous mesenchyme),CL:0002577 (placental epithelial cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001987 (placenta), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.23e-89FFCP PHASE1:Hg19::chr11:1982869..1982890,+#_6eb4a59f47192f38652377ca3d895831p@chr11:1982869..1982890, +
4.23e-89FFCP PHASE2:Hg19::chr11:1982869..1982890,+#_6eb4a59f47192f38652377ca3d895831p@chr11:1982869..1982890, +
7.73e-89FFCP PHASE2:Hg19::chr5:153858046..153858049,+#_519aaa90d7385a087cdecaddbcd62674p@chr5:153858046..153858049, +
7.73e-89FFCP PHASE1:Hg19::chr5:153858046..153858049,+#_519aaa90d7385a087cdecaddbcd62674p@chr5:153858046..153858049, +
1.04e-88FFCP PHASE2:Hg19::chr5:153854787..153854796,-#_7e7073f06c5a95f529393e3d2a89b5ffp@chr5:153854787..153854796, -
1.04e-88FFCP PHASE1:Hg19::chr5:153854787..153854796,-#_7e7073f06c5a95f529393e3d2a89b5ffp@chr5:153854787..153854796, -
1.41e-88FFCP PHASE1:Hg19::chr1:209704573..209704587,+#_2aedfc191048e68a67047135064be737p@chr1:209704573..209704587, +
1.41e-88FFCP PHASE2:Hg19::chr1:209704573..209704587,+#_2aedfc191048e68a67047135064be737p@chr1:209704573..209704587, +
1.91e-88FFCP PHASE2:Hg19::chr1:209704648..209704656,+#_036ceb8d26b52f19c29d47bca0f8b1aap@chr1:209704648..209704656, +
1.91e-88FFCP PHASE1:Hg19::chr1:209704648..209704656,+#_036ceb8d26b52f19c29d47bca0f8b1aap@chr1:209704648..209704656, +
1.87e-86FFCP PHASE1:Mm9::chr13:27734346..27734351,-#_6520e98c36637a478344c8458e9c6fc8p2@Prl7a1
1.87e-86FFCP PHASE2:Mm9::chr13:27734346..27734351,-#_6520e98c36637a478344c8458e9c6fc8p2@Prl7a1
1.87e-86FFCP PHASE2:Mm9::chr2:4310640..4310648,+#_6520e98c36637a478344c8458e9c6fc8p59@Frmd4a
1.87e-86FFCP PHASE2:Mm9::chr17:8927606..8927607,-#_6520e98c36637a478344c8458e9c6fc8p@chr17:8927606..8927607, -
1.87e-86FFCP PHASE1:Mm9::chr13:61041595..61041607,-#_6520e98c36637a478344c8458e9c6fc8p@chr13:61041595..61041607, -
1.87e-86FFCP PHASE1:Mm9::chr14:55273056..55273059,-#_6520e98c36637a478344c8458e9c6fc8p@chr14:55273056..55273059, -
1.87e-86FFCP PHASE1:Mm9::chr4:140663013..140663022,+#_6520e98c36637a478344c8458e9c6fc8p@chr4:140663013..140663022, +
1.87e-86FFCP PHASE1:Mm9::chr6:97907005..97907011,+#_6520e98c36637a478344c8458e9c6fc8p@chr6:97907005..97907011, +
1.87e-86FFCP PHASE2:Mm9::chr13:43250181..43250190,-#_6520e98c36637a478344c8458e9c6fc8p@chr13:43250181..43250190, -
1.87e-86FFCP PHASE2:Mm9::chr7:137716644..137716651,-#_6520e98c36637a478344c8458e9c6fc8p5@Nsmce4a
1.87e-86FFCP PHASE1:Mm9::chr13:27337717..27337754,-#_6520e98c36637a478344c8458e9c6fc8p@chr13:27337717..27337754, -
1.87e-86FFCP PHASE2:Mm9::chr13:27440741..27440750,+#_6520e98c36637a478344c8458e9c6fc8p@chr13:27440741..27440750, +
1.87e-86FFCP PHASE2:Mm9::chr6:121053540..121053548,-#_6520e98c36637a478344c8458e9c6fc8p@chr6:121053540..121053548, -
1.87e-86FFCP PHASE2:Mm9::chr14:55273056..55273059,-#_6520e98c36637a478344c8458e9c6fc8p@chr14:55273056..55273059, -
1.87e-86FFCP PHASE1:Mm9::chr13:27440741..27440750,+#_6520e98c36637a478344c8458e9c6fc8p@chr13:27440741..27440750, +
1.87e-86FFCP PHASE1:Mm9::chr7:17788884..17788890,+#_6520e98c36637a478344c8458e9c6fc8p3@Psg29
1.87e-86FFCP PHASE2:Mm9::chr14:69915427..69915460,-#_6520e98c36637a478344c8458e9c6fc8p@chr14:69915427..69915460, -
1.87e-86FFCP PHASE1:Mm9::chr7:137716644..137716651,-#_6520e98c36637a478344c8458e9c6fc8p5@Nsmce4a
1.87e-86FFCP PHASE1:Mm9::chr13:27335655..27335658,+#_6520e98c36637a478344c8458e9c6fc8p@chr13:27335655..27335658, +
1.87e-86FFCP PHASE1:Mm9::chr13:43250181..43250190,-#_6520e98c36637a478344c8458e9c6fc8p@chr13:43250181..43250190, -
1.87e-86FFCP PHASE2:Mm9::chr4:140663013..140663022,+#_6520e98c36637a478344c8458e9c6fc8p@chr4:140663013..140663022, +
1.87e-86FFCP PHASE2:Mm9::chr7:17788884..17788890,+#_6520e98c36637a478344c8458e9c6fc8p3@Psg29
1.87e-86FFCP PHASE2:Mm9::chr13:27337717..27337754,-#_6520e98c36637a478344c8458e9c6fc8p@chr13:27337717..27337754, -
1.87e-86FFCP PHASE1:Mm9::chr14:69915427..69915460,-#_6520e98c36637a478344c8458e9c6fc8-, p@chr14:69915427..69915460
1.87e-86FFCP PHASE2:Mm9::chr3:89171538..89171544,+#_6520e98c36637a478344c8458e9c6fc8p@chr3:89171538..89171544, +
1.87e-86FFCP PHASE1:Mm9::chr3:89171538..89171544,+#_6520e98c36637a478344c8458e9c6fc8p@chr3:89171538..89171544, +
1.87e-86FFCP PHASE1:Mm9::chr17:8927606..8927607,-#_6520e98c36637a478344c8458e9c6fc8p@chr17:8927606..8927607, -
1.87e-86FFCP PHASE1:Mm9::chr2:4310640..4310648,+#_6520e98c36637a478344c8458e9c6fc8p59@Frmd4a
1.87e-86FFCP PHASE2:Mm9::chr16:92613101..92613124,+#_6520e98c36637a478344c8458e9c6fc8p2@ENSMUST00000148919
1.87e-86FFCP PHASE2:Mm9::chr17:35991777..35991786,+#_6520e98c36637a478344c8458e9c6fc8p@chr17:35991777..35991786, +
1.87e-86FFCP PHASE2:Mm9::chr13:61041595..61041607,-#_6520e98c36637a478344c8458e9c6fc8p@chr13:61041595..61041607, -
1.87e-86FFCP PHASE1:Mm9::chr6:121053540..121053548,-#_6520e98c36637a478344c8458e9c6fc8-, p@chr6:121053540..121053548
1.87e-86FFCP PHASE1:Mm9::chr17:35991777..35991786,+#_6520e98c36637a478344c8458e9c6fc8p@chr17:35991777..35991786, +
1.87e-86FFCP PHASE2:Mm9::chr6:97907005..97907011,+#_6520e98c36637a478344c8458e9c6fc8p@chr6:97907005..97907011, +
1.87e-86FFCP PHASE1:Mm9::chr16:92613101..92613124,+#_6520e98c36637a478344c8458e9c6fc8p2@ENSMUST00000148919
1.87e-86FFCP PHASE2:Mm9::chr13:27335655..27335658,+#_6520e98c36637a478344c8458e9c6fc8p@chr13:27335655..27335658, +
1.21e-74FFCP PHASE1:Hg19::chr20:36794938..36794945,-#_6731b36a39cb1b870682ee4794980369p45@TGM2
1.21e-74FFCP PHASE2:Hg19::chr20:36794938..36794945,-#_6731b36a39cb1b870682ee4794980369p45@TGM2
2.01e-74FFCP PHASE1:Hg19::chr8:22034506..22034518,+#_f6e08503d7b18ad1a27a001ea3675beep@chr8:22034506..22034518, +
2.01e-74FFCP PHASE2:Hg19::chr8:22034506..22034518,+#_f6e08503d7b18ad1a27a001ea3675beep@chr8:22034506..22034518, +
2.01e-74FFCP PHASE2:Hg19::chr14:24729174..24729183,-#_f6e08503d7b18ad1a27a001ea3675beep17@TGM1
2.01e-74FFCP PHASE1:Hg19::chr14:24729174..24729183,-#_f6e08503d7b18ad1a27a001ea3675beep17@TGM1
3.32e-74FFCP PHASE2:Hg19::chr3:134044856..134044890,+#_a6163541f42b8d7f9dd472ecadcf9fa1p@chr3:134044856..134044890, +
3.32e-74FFCP PHASE1:Hg19::chr5:89143573..89143607,-#_a6163541f42b8d7f9dd472ecadcf9fa1p@chr5:89143573..89143607, -
3.32e-74FFCP PHASE1:Hg19::chr3:134044856..134044890,+#_a6163541f42b8d7f9dd472ecadcf9fa1p@chr3:134044856..134044890, +
3.32e-74FFCP PHASE2:Hg19::chr5:89143573..89143607,-#_a6163541f42b8d7f9dd472ecadcf9fa1p@chr5:89143573..89143607, -
4.26e-74FFCP PHASE1:Hg19::chr3:55384353..55384357,+#_dd6d470164431220176a9cead81499f2p@chr3:55384353..55384357, +
4.26e-74FFCP PHASE2:Hg19::chr3:55384353..55384357,+#_dd6d470164431220176a9cead81499f2p@chr3:55384353..55384357, +
5.48e-74FFCP PHASE1:Hg19::chr1:209704612..209704625,+#_350036146ca17ac8cedd486f2809da93p@chr1:209704612..209704625, +
5.48e-74FFCP PHASE2:Hg19::chr1:209704612..209704625,+#_350036146ca17ac8cedd486f2809da93+, p@chr1:209704612..209704625
7.04e-74FFCP PHASE2:Hg19::chr17:37824598..37824605,+#_d13806b833e30b5ddd7e89bd0eb5a699p15@PNMT
7.04e-74FFCP PHASE1:Hg19::chr17:37824598..37824605,+#_d13806b833e30b5ddd7e89bd0eb5a699p15@PNMT
4.67e-66FFCP PHASE2:Hg19::chr12:51785088..51785093,-#_685a24c8aeb62986ef82e43b11f8542bp12@GALNT6
4.67e-66FFCP PHASE1:Hg19::chr12:51785088..51785093,-#_685a24c8aeb62986ef82e43b11f8542bp12@GALNT6
2.61e-64FFCP PHASE1:Hg19::chr14:104202639..104202646,-#_b39c40c1f1fb816ed1885556e1b5b718p@chr14:104202639..104202646, -
2.61e-64FFCP PHASE2:Hg19::chr14:104202639..104202646,-#_b39c40c1f1fb816ed1885556e1b5b718-, p@chr14:104202639..104202646
3.24e-64FFCP PHASE1:Hg19::chr9:112300690..112300705,-#_7ae518485113525c8ef794460364f752-, p@chr9:112300690..112300705
3.24e-64FFCP PHASE2:Hg19::chr9:88126069..88126080,-#_7ae518485113525c8ef794460364f752-, p@chr9:88126069..88126080
3.24e-64FFCP PHASE2:Hg19::chr5:153855055..153855066,-#_7ae518485113525c8ef794460364f752p@chr5:153855055..153855066, -
3.24e-64FFCP PHASE1:Hg19::chr9:88126069..88126080,-#_7ae518485113525c8ef794460364f752p@chr9:88126069..88126080, -
3.24e-64FFCP PHASE1:Hg19::chr5:153855055..153855066,-#_7ae518485113525c8ef794460364f752p@chr5:153855055..153855066, -
3.24e-64FFCP PHASE2:Hg19::chr9:112300690..112300705,-#_7ae518485113525c8ef794460364f752p@chr9:112300690..112300705, -
4.02e-64FFCP PHASE2:Hg19::chr17:37824217..37824226,+#_5023d421dd3a6e9acfeb2be366ce050bp12@PNMT
4.02e-64FFCP PHASE2:Hg19::chr20:61288222..61288232,+#_5023d421dd3a6e9acfeb2be366ce050bp14@SLCO4A1
4.02e-64FFCP PHASE1:Hg19::chr20:61288222..61288232,+#_5023d421dd3a6e9acfeb2be366ce050bp14@SLCO4A1
4.02e-64FFCP PHASE1:Hg19::chr17:37824217..37824226,+#_5023d421dd3a6e9acfeb2be366ce050bp12@PNMT
6.18e-64FFCP PHASE1:Hg19::chr2:25704561..25704572,-#_d07cc1e2faa752c687836ee94a0a5e79p20@DTNB
6.18e-64FFCP PHASE2:Hg19::chr2:25704561..25704572,-#_d07cc1e2faa752c687836ee94a0a5e79p20@DTNB
9.51e-64FFCP PHASE1:Hg19::chr5:170239966..170239982,+#_cb850e184bc3301fd3c4d5ccf42e91cbp@chr5:170239966..170239982, +
9.51e-64FFCP PHASE2:Hg19::chr5:170239966..170239982,+#_cb850e184bc3301fd3c4d5ccf42e91cbp@chr5:170239966..170239982, +
1.46e-63FFCP PHASE2:Hg19::chr10:131344593..131344605,+#_9da4d1b2bb455b7ce6cdacabfef92d97p@chr10:131344593..131344605, +
1.46e-63FFCP PHASE1:Hg19::chr10:131344593..131344605,+#_9da4d1b2bb455b7ce6cdacabfef92d97p@chr10:131344593..131344605, +
1.81e-63FFCP PHASE2:Hg19::chr5:170176045..170176055,-#_2e36cbf251984572513b08321b8b6dbdp@chr5:170176045..170176055, -
1.81e-63FFCP PHASE1:Hg19::chr5:170176045..170176055,-#_2e36cbf251984572513b08321b8b6dbdp@chr5:170176045..170176055, -
5.76e-61FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_bf7b5694adc894ed0bc229729bbd963dp1@ENST00000469806
5.76e-61FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_bf7b5694adc894ed0bc229729bbd963dp1@ENST00000469806
4.28e-60FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_4123e52f78fbdb3206ee3f92fe5d5d34p@chr15:68344995..68345013, +
4.28e-60FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_4123e52f78fbdb3206ee3f92fe5d5d34p@chr15:68344995..68345013, +
1.68e-58FFCP PHASE2:Mm9::chr5:125523411..125523420,-#_04e3cb903cae331bb8ebe4417c0f582bp24@Ncor2
1.68e-58FFCP PHASE2:Mm9::chr7:17788842..17788851,+#_04e3cb903cae331bb8ebe4417c0f582bp2@Psg29
1.68e-58FFCP PHASE2:Mm9::chr15:78342035..78342046,-#_04e3cb903cae331bb8ebe4417c0f582bp@chr15:78342035..78342046, -
1.68e-58FFCP PHASE1:Mm9::chrX:131570630..131570638,-#_04e3cb903cae331bb8ebe4417c0f582bp6@ENSMUST00000153610
1.68e-58FFCP PHASE1:Mm9::chr11:55223511..55223524,-#_04e3cb903cae331bb8ebe4417c0f582bp@chr11:55223511..55223524, -
1.68e-58FFCP PHASE1:Mm9::chr7:150952911..150952917,-#_04e3cb903cae331bb8ebe4417c0f582bp3@Mrgprg
1.68e-58FFCP PHASE1:Mm9::chr6:48879890..48879896,+#_04e3cb903cae331bb8ebe4417c0f582bp1@1600015I10Rik
1.68e-58FFCP PHASE1:Mm9::chr13:27288509..27288515,+#_04e3cb903cae331bb8ebe4417c0f582bp1@Prl3c1
1.68e-58FFCP PHASE1:Mm9::chr7:17788842..17788851,+#_04e3cb903cae331bb8ebe4417c0f582bp2@Psg29
1.68e-58FFCP PHASE2:Mm9::chr6:48879890..48879896,+#_04e3cb903cae331bb8ebe4417c0f582bp1@1600015I10Rik
1.68e-58FFCP PHASE2:Mm9::chr6:97907033..97907043,+#_04e3cb903cae331bb8ebe4417c0f582bp@chr6:97907033..97907043, +
1.68e-58FFCP PHASE1:Mm9::chr1:63260883..63260896,-#_04e3cb903cae331bb8ebe4417c0f582bp3@Gpr1