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UBERON:0000062

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Name:organ
Namespace:FANTOM
Definition:"Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)]
Xrefs:
links:

EFO:0000634
FMA:67498
MA:0003001
ncithesaurus:Organ
NIF_GrossAnatomy:birnlex_4
OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA

OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA
Comments:note that CARO does not include a generic 'organ' class, only simple and compound organ

Ontology association

Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.



link to ontology dataset


data

Parents

is_a:UBERON:0010000(multicellular anatomical structure)
part_of:UBERON:0000467(anatomical system)



Children

is a:UBERON:0000020 (sense organ),UBERON:0000057 (urethra),UBERON:0000094 (membrane organ),UBERON:0000171 (respiration organ),UBERON:0000955 (brain),UBERON:0000997 (mammalian vulva),UBERON:0001630 (muscle organ),UBERON:0001849 (membranous labyrinth),UBERON:0001987 (placenta),UBERON:0002097 (skin of body),UBERON:0002530 (gland),UBERON:0003103 (compound organ),UBERON:0003133 (reproductive organ),UBERON:0004177 (hemopoietic organ),UBERON:0004765 (skeletal element),UBERON:0005057 (immune organ),UBERON:0005174 (dorsal region element),UBERON:0005177 (trunk region element),UBERON:0005906 (serous sac),UBERON:0007196 (tracheobronchial tree),UBERON:0013765 (digestive system element)
part of:UBERON:0000064 (organ part),UBERON:0006876 (vasculature of organ)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens) Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000062 (organ), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

No analysis results