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UBERON:0002104

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Name:visual system
Namespace:FANTOM
Definition:"." [Wikipedia:Visual_system]
Xrefs:
links:

AAO:0000632
FMA:7191
MA:0002444
ncithesaurus:Visual_System
NIF_GrossAnatomy:FMAID_7191
OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA
SCTID:281831001
TAO:0001127
XAO:0003198

ZFA:0001127
Synonyms: "visual organ system" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7191-MA_0002444-ZFA_0001127
Subset: uberon_slim
vertebrate_core

Ontology association

Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.



link to ontology dataset


data

Parents

is_a:UBERON:0001032(sensory system)



Children

part of:UBERON:0000941 (cranial nerve II),UBERON:0000970 (eye),UBERON:0004904 (nerve connecting eye with brain)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens) Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002104 (visual system), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

P-valueFFCPShort description
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p4@Dct
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@E130218I03Rik
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p3@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p4@Dct
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p3@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr16:21743134..21743139, -
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9-, p@chr16:21743134..21743139
3.94e-79FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_26600325f04617b5b2b5b79eecee9412p10@SIX3
3.94e-79FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_26600325f04617b5b2b5b79eecee9412p10@SIX3
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_bab7acc6b4bab0150a140a302bac9bdfp@chr7:64675015..64675028, +
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_bab7acc6b4bab0150a140a302bac9bdfp3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_bab7acc6b4bab0150a140a302bac9bdfp3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_bab7acc6b4bab0150a140a302bac9bdfp@chr7:64675015..64675028, +
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_b452dec6668dc92b7a12a259287a165fp@chr6:97891135..97891147, +
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_b452dec6668dc92b7a12a259287a165fp6@Pax6
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_b452dec6668dc92b7a12a259287a165fp@chr6:97891135..97891147, +
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_b452dec6668dc92b7a12a259287a165fp6@Pax6
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_acd9740fa39f3796fafb3bef1e90b816p1@4933429O19Rik
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_acd9740fa39f3796fafb3bef1e90b816p1@4933429O19Rik
4.97e-77FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_68da2ef74d650f130a3759934aadb399p1@Rpgrip1
4.97e-77FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_68da2ef74d650f130a3759934aadb399p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_68da2ef74d650f130a3759934aadb399p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690636..112690656, +
4.97e-77FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_68da2ef74d650f130a3759934aadb399p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_68da2ef74d650f130a3759934aadb399p1@Pdc
4.97e-77FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_68da2ef74d650f130a3759934aadb399p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_68da2ef74d650f130a3759934aadb399p1@Rrh
4.97e-77FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_68da2ef74d650f130a3759934aadb399p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_68da2ef74d650f130a3759934aadb399p2@Cryga
4.97e-77FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_68da2ef74d650f130a3759934aadb399p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_68da2ef74d650f130a3759934aadb399p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_68da2ef74d650f130a3759934aadb399p1@Rpgrip1
4.97e-77FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_68da2ef74d650f130a3759934aadb399p@chr6:85969237..85969247, +
4.97e-77FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_68da2ef74d650f130a3759934aadb399p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_68da2ef74d650f130a3759934aadb399p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_68da2ef74d650f130a3759934aadb399p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_68da2ef74d650f130a3759934aadb399p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_68da2ef74d650f130a3759934aadb399p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_68da2ef74d650f130a3759934aadb399p2@Rrh
4.97e-77FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_68da2ef74d650f130a3759934aadb399p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_68da2ef74d650f130a3759934aadb399p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_68da2ef74d650f130a3759934aadb399p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_68da2ef74d650f130a3759934aadb399p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_68da2ef74d650f130a3759934aadb399p6@Fbxo27
4.97e-77FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_68da2ef74d650f130a3759934aadb399p@chr17:31818629..31818644, +
4.97e-77FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_68da2ef74d650f130a3759934aadb399p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_68da2ef74d650f130a3759934aadb399p@chr5:112691047..112691066, +
4.97e-77FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_68da2ef74d650f130a3759934aadb399p1@Impg2
4.97e-77FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_68da2ef74d650f130a3759934aadb399p1@Opn4
4.97e-77FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_68da2ef74d650f130a3759934aadb399p6@Fbxo27
4.97e-77FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_68da2ef74d650f130a3759934aadb399p1@Pdc
4.97e-77FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_68da2ef74d650f130a3759934aadb399p2@Rrh
4.97e-77FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_68da2ef74d650f130a3759934aadb399p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_68da2ef74d650f130a3759934aadb399p1@Gm4792
4.97e-77FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_68da2ef74d650f130a3759934aadb399p2@Hsd17b12
4.97e-77FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_68da2ef74d650f130a3759934aadb399p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_68da2ef74d650f130a3759934aadb399p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_68da2ef74d650f130a3759934aadb399p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE2:Mm9::chr10:93761330..93761358,-#_68da2ef74d650f130a3759934aadb399p1@Gm4792
4.97e-77FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_68da2ef74d650f130a3759934aadb399p2@Cryga
4.97e-77FFCP PHASE1:Mm9::chr15:36655026..36655032,+#_68da2ef74d650f130a3759934aadb399p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_68da2ef74d650f130a3759934aadb399p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_68da2ef74d650f130a3759934aadb399p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_68da2ef74d650f130a3759934aadb399p1@Impg2
4.97e-77FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_68da2ef74d650f130a3759934aadb399p3@Rrh
4.97e-77FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_68da2ef74d650f130a3759934aadb399p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_68da2ef74d650f130a3759934aadb399p@chr5:113504891..113504916, -
4.97e-77FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_68da2ef74d650f130a3759934aadb399p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_68da2ef74d650f130a3759934aadb399p1@Cngb3
4.97e-77FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_68da2ef74d650f130a3759934aadb399p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_68da2ef74d650f130a3759934aadb399p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_68da2ef74d650f130a3759934aadb399p1@ENSMUST00000173365










Property "Property value" (as page type) with input value "UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.