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UBERON:0002372

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Name:tonsil
Namespace:FANTOM
Definition:"Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil]
Xrefs:
links:

BTO:0001387
EFO:0001401
EV:0100052
FMA:9609
GAID:341
MA:0000143
MESH:A.03.867.603.925
ncithesaurus:Tonsil
ncithesaurus:Tonsilar_Tissue
ncithesaurus:Tonsillar_Lymphoid_Tissue
OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA

VHOG:0001139
Synonyms: "Mandel" RELATED [BTO:0001387]
Comments:Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat.
Alt_id: UBERON:FMA_9609-MA_0000143
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001962(gut-associated lymphoid tissue),UBERON:0004119(endoderm-derived structure)
part_of:UBERON:0001735(tonsillar ring)



Children

derives from:FF:0010047 (human tonsil - adult sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002372 (tonsil), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_b6e6553187b335dbd3f83f2c275fc4ebp7@CU692075
5.42e-195FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_b6e6553187b335dbd3f83f2c275fc4ebp2@ENST00000424377
5.42e-195FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_b6e6553187b335dbd3f83f2c275fc4ebp1@IGKV6-21
5.42e-195FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_b6e6553187b335dbd3f83f2c275fc4ebp7@CU692075
5.42e-195FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_b6e6553187b335dbd3f83f2c275fc4ebp2@IGHV3-53
5.42e-195FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_b6e6553187b335dbd3f83f2c275fc4ebp1@IGKV6-21
5.42e-195FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_b6e6553187b335dbd3f83f2c275fc4ebp@chr16:12334592..12334599, +
5.42e-195FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_b6e6553187b335dbd3f83f2c275fc4ebp2@ENST00000424377
5.42e-195FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_b6e6553187b335dbd3f83f2c275fc4ebp2@IGHV3-53
5.42e-195FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_b6e6553187b335dbd3f83f2c275fc4ebp@chr16:12337006..12337010, +
5.42e-195FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_b6e6553187b335dbd3f83f2c275fc4ebp@chr19:5850872..5850893, -
5.42e-195FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_b6e6553187b335dbd3f83f2c275fc4ebp@chr16:12334592..12334599, +
5.42e-195FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_b6e6553187b335dbd3f83f2c275fc4ebp@chr19:5850872..5850893, -
5.42e-195FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_b6e6553187b335dbd3f83f2c275fc4ebp@chr16:12337006..12337010, +
9.37e-99FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_49e834bd61f3c79f086d9d06886b1becp10@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_49e834bd61f3c79f086d9d06886b1becp10@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_49e834bd61f3c79f086d9d06886b1becp30@MUC5B
9.37e-99FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_49e834bd61f3c79f086d9d06886b1becp@chr6:168095835..168095838, -
9.37e-99FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_49e834bd61f3c79f086d9d06886b1becp30@MUC5B
9.37e-99FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_49e834bd61f3c79f086d9d06886b1becp@chr19:14662395..14662414, +
9.37e-99FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_49e834bd61f3c79f086d9d06886b1becp@chr11:1263622..1263627, +
9.37e-99FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_49e834bd61f3c79f086d9d06886b1becp8@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_49e834bd61f3c79f086d9d06886b1becp@chr6:168095835..168095838, -
9.37e-99FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_49e834bd61f3c79f086d9d06886b1becp8@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_49e834bd61f3c79f086d9d06886b1becp@chr7:25361115..25361117, +
9.37e-99FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_49e834bd61f3c79f086d9d06886b1becp@chr19:14662395..14662414, +
9.37e-99FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_49e834bd61f3c79f086d9d06886b1becp@chr7:25361115..25361117, +
9.37e-99FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_49e834bd61f3c79f086d9d06886b1becp@chr11:1263622..1263627, +
2.55e-98FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_fd1bf2cd51d2a503fbdda2d528d8b775p30@RPRD1B
2.55e-98FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr16:70602961..70602972, +
2.55e-98FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr10:135337234..135337244, -
2.55e-98FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr12:52478564..52478569, +
2.55e-98FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr11:1263382..1263385, +
2.55e-98FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_fd1bf2cd51d2a503fbdda2d528d8b775p6@METTL19
2.55e-98FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr11:1263382..1263385, +
2.55e-98FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_fd1bf2cd51d2a503fbdda2d528d8b775+, p@chr12:52478564..52478569
2.55e-98FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr11:1260725..1260734, +
2.55e-98FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_fd1bf2cd51d2a503fbdda2d528d8b775p30@RPRD1B
2.55e-98FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr11:1260725..1260734, +
2.55e-98FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_fd1bf2cd51d2a503fbdda2d528d8b775p6@METTL19
2.55e-98FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr16:70602961..70602972, +
2.55e-98FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr10:135337234..135337244, -
1.23e-66FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_c955a5017df4e7c01a47a49045592bd5p@chr12:52478546..52478552, +
1.23e-66FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_c955a5017df4e7c01a47a49045592bd5p@chr12:52478546..52478552, +
1.23e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_c955a5017df4e7c01a47a49045592bd5p2@FCRL4
1.23e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_c955a5017df4e7c01a47a49045592bd5p2@FCRL4
2.39e-66FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_0c3e315a6ceada3c4c00313d369090ddp@chr13:107026326..107026335, -
2.39e-66FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_0c3e315a6ceada3c4c00313d369090ddp@chr20:31612754..31612763, +
2.39e-66FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_0c3e315a6ceada3c4c00313d369090ddp@chr20:31612754..31612763, +
2.39e-66FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_0c3e315a6ceada3c4c00313d369090ddp@chr11:1265985..1265990, +
2.39e-66FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_0c3e315a6ceada3c4c00313d369090dd+, p@chr14:103560509..103560517
2.39e-66FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_0c3e315a6ceada3c4c00313d369090ddp@chr13:107026326..107026335, -
2.39e-66FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_0c3e315a6ceada3c4c00313d369090ddp@chr11:1265985..1265990, +
2.39e-66FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_0c3e315a6ceada3c4c00313d369090ddp1@BC131817
2.39e-66FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_0c3e315a6ceada3c4c00313d369090ddp@chr19:36640447..36640459, +
2.39e-66FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_0c3e315a6ceada3c4c00313d369090ddp@chr19:36640447..36640459, +
2.39e-66FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_0c3e315a6ceada3c4c00313d369090ddp1@BC131817
2.39e-66FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_0c3e315a6ceada3c4c00313d369090ddp@chr14:103560509..103560517, +
4.66e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_c297bf8c1a725ba2e7b46347a02b7525p43@LPP
4.66e-66FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr11:1283367..1283377, +
4.66e-66FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr18:49921251..49921263, +
4.66e-66FFCP PHASE2:Hg19::chr11:1283367..1283377,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr11:1283367..1283377, +
4.66e-66FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr3:124535316..124535340, +
4.66e-66FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_c297bf8c1a725ba2e7b46347a02b7525p58@LPP
4.66e-66FFCP PHASE2:Hg19::chr18:29006845..29006854,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr18:29006845..29006854, -
4.66e-66FFCP PHASE2:Hg19::chr1:152382640..152382645,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr1:152382640..152382645, +
4.66e-66FFCP PHASE1:Hg19::chr12:53673418..53673427,+#_c297bf8c1a725ba2e7b46347a02b7525p9@ESPL1
4.66e-66FFCP PHASE1:Hg19::chr6:30954084..30954093,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr1:152382640..152382645,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr1:152382640..152382645, +
4.66e-66FFCP PHASE2:Hg19::chr6:30954084..30954093,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr18:29006845..29006854,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr18:29006845..29006854, -
4.66e-66FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_c297bf8c1a725ba2e7b46347a02b7525p43@LPP
4.66e-66FFCP PHASE2:Hg19::chr18:49921251..49921263,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr18:49921251..49921263, +
4.66e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr16:69418649..69418659, -
4.66e-66FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_c297bf8c1a725ba2e7b46347a02b7525p58@LPP
4.66e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr16:69418649..69418659, -
4.66e-66FFCP PHASE2:Hg19::chr12:53673418..53673427,+#_c297bf8c1a725ba2e7b46347a02b7525p9@ESPL1
4.66e-66FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_c297bf8c1a725ba2e7b46347a02b7525p10@KLK11
4.66e-66FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr3:124535316..124535340, +
4.66e-66FFCP PHASE2:Hg19::chr19:51530837..51530842,-#_c297bf8c1a725ba2e7b46347a02b7525p10@KLK11
1.46e-50FFCP PHASE1:Hg19::chr19:51531241..51531252,-#_20b8d069e21e7c51dab0fd8f0b4afd53p9@KLK11
1.46e-50FFCP PHASE1:Hg19::chr4:185197096..185197107,-#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr4:185197096..185197107, -
1.46e-50FFCP PHASE2:Hg19::chr19:51531241..51531252,-#_20b8d069e21e7c51dab0fd8f0b4afd53p9@KLK11
1.46e-50FFCP PHASE1:Hg19::chr8:101661845..101661855,-#_20b8d069e21e7c51dab0fd8f0b4afd53p3@SNX31
1.46e-50FFCP PHASE2:Hg19::chr5:66194621..66194633,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr5:66194621..66194633, +
1.46e-50FFCP PHASE1:Hg19::chr11:1262797..1262805,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr11:1262797..1262805, +
1.46e-50FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_20b8d069e21e7c51dab0fd8f0b4afd53p24@RPRD1B
1.46e-50FFCP PHASE2:Hg19::chr11:1262797..1262805,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr11:1262797..1262805, +
1.46e-50FFCP PHASE2:Hg19::chr14:106237005..106237028,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr14:106237005..106237028, +
1.46e-50FFCP PHASE1:Hg19::chr5:66194621..66194633,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr5:66194621..66194633, +
1.46e-50FFCP PHASE2:Hg19::chr8:101661845..101661855,-#_20b8d069e21e7c51dab0fd8f0b4afd53p3@SNX31
1.46e-50FFCP PHASE1:Hg19::chr2:40136465..40136469,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr2:40136465..40136469, +
1.46e-50FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_20b8d069e21e7c51dab0fd8f0b4afd53p24@RPRD1B
1.46e-50FFCP PHASE1:Hg19::chr14:106237005..106237028,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr14:106237005..106237028, +
1.46e-50FFCP PHASE2:Hg19::chr2:40136465..40136469,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr2:40136465..40136469, +
1.46e-50FFCP PHASE2:Hg19::chr4:185197096..185197107,-#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr4:185197096..185197107, -
2.42e-50FFCP PHASE1:Hg19::chr11:1263486..1263491,+#_e896a45235254f3ee2784711b2371302p@chr11:1263486..1263491, +
2.42e-50FFCP PHASE1:Hg19::chr14:106845840..106845851,-#_e896a45235254f3ee2784711b2371302p1@IGHV3-35
2.42e-50FFCP PHASE2:Hg19::chr11:1263486..1263491,+#_e896a45235254f3ee2784711b2371302p@chr11:1263486..1263491, +
2.42e-50FFCP PHASE1:Hg19::chr3:45065078..45065085,-#_e896a45235254f3ee2784711b2371302p@chr3:45065078..45065085, -