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UBERON:0002950

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Name:regional part of midbrain
Namespace:FANTOM
Definition:"A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:61997

NIF_GrossAnatomy:birnlex_763
Synonyms: "anatomical structure of brain of midbrain" EXACT [OBOL:automatic]
"biological structure of brain of midbrain" EXACT [OBOL:automatic]
"brain anatomical structure of midbrain" EXACT [OBOL:automatic]
"brain biological structure of midbrain" EXACT [OBOL:automatic]
"midbrain anatomical structure of brain" EXACT [OBOL:automatic]
"midbrain biological structure of brain" EXACT [OBOL:automatic]
"midbrain brain anatomical structure" EXACT [OBOL:automatic]
"midbrain brain biological structure" EXACT [OBOL:automatic]
"midbrain neuraxis segment" EXACT [OBOL:automatic]
"midbrain regional part of brain" EXACT [OBOL:automatic]
"midbrain segment" EXACT [FMA:61997]
"midbrain segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of midbrain" EXACT [OBOL:automatic]
"regional part of brain of midbrain" EXACT [OBOL:automatic]
"segment of brain of midbrain" EXACT [OBOL:automatic]
"segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002616(regional part of brain)
part_of:UBERON:0001891(midbrain)



Children

is a:UBERON:0002314 (midbrain tectum)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002950 (regional part of midbrain), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_13c30aef985bf4955f282afd3b276ebcp5@C1orf130
9.37e-99FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_13c30aef985bf4955f282afd3b276ebc+, p@chr9:139916913..139916917
9.37e-99FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_13c30aef985bf4955f282afd3b276ebcp@chr10:68718064..68718067, -
9.37e-99FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_13c30aef985bf4955f282afd3b276ebcp@chr9:139916913..139916917, +
9.37e-99FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_13c30aef985bf4955f282afd3b276ebcp59@ANK3
9.37e-99FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_13c30aef985bf4955f282afd3b276ebcp59@ANK3
9.37e-99FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_13c30aef985bf4955f282afd3b276ebcp@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_13c30aef985bf4955f282afd3b276ebcp5@C1orf130
9.37e-99FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_13c30aef985bf4955f282afd3b276ebcp@chr4:56229918..56229919, -
9.37e-99FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_13c30aef985bf4955f282afd3b276ebcp@chr10:68718064..68718067, -
2.55e-98FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_e507a854b733ac7500ee560022241c1bp@chr5:57935348..57935354, -
2.55e-98FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_e507a854b733ac7500ee560022241c1bp@chr18:74702556..74702558, -
2.55e-98FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_e507a854b733ac7500ee560022241c1bp@chr5:57935348..57935354, -
2.55e-98FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_e507a854b733ac7500ee560022241c1bp@chr1:65776926..65776928, +
2.55e-98FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_e507a854b733ac7500ee560022241c1bp@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_e507a854b733ac7500ee560022241c1bp@chr1:65776926..65776928, +
1.23e-66FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_2afbe33b3ff608518733346f7e1625f9p@chr10:22967066..22967069, -
1.23e-66FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_2afbe33b3ff608518733346f7e1625f9p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_2afbe33b3ff608518733346f7e1625f9p6@PKD1L2
1.23e-66FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_2afbe33b3ff608518733346f7e1625f9p6@PKD1L2
1.23e-66FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_2afbe33b3ff608518733346f7e1625f9p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_2afbe33b3ff608518733346f7e1625f9p@chr16:57309513..57309516, -
1.23e-66FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_2afbe33b3ff608518733346f7e1625f9p@chr16:57309513..57309516, -
1.23e-66FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_2afbe33b3ff608518733346f7e1625f9p@chr10:22967066..22967069, -
2.39e-66FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_c996a56d86627bfda9b6528262ef7624p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_c996a56d86627bfda9b6528262ef7624p@chr14:95727527..95727529, -
2.39e-66FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_c996a56d86627bfda9b6528262ef7624p@chr11:7340444..7340448, +
2.39e-66FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_c996a56d86627bfda9b6528262ef7624p@chr11:7340444..7340448, +
2.39e-66FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_c996a56d86627bfda9b6528262ef7624p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_c996a56d86627bfda9b6528262ef7624p@chr14:95727527..95727529, -
4.66e-66FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_fd449d7c45f1b7227f6c9fcce29a31bap@chr14:105166013..105166017, +
4.66e-66FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_fd449d7c45f1b7227f6c9fcce29a31bap@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_fd449d7c45f1b7227f6c9fcce29a31bap@chr9:79516011..79516022, -
4.66e-66FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_fd449d7c45f1b7227f6c9fcce29a31bap8@OMG
4.66e-66FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_fd449d7c45f1b7227f6c9fcce29a31bap@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_fd449d7c45f1b7227f6c9fcce29a31bap8@OMG
4.66e-66FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_fd449d7c45f1b7227f6c9fcce29a31bap@chr14:105166013..105166017, +
4.66e-66FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_fd449d7c45f1b7227f6c9fcce29a31bap@chr13:34922094..34922105, +
4.66e-66FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_fd449d7c45f1b7227f6c9fcce29a31bap@chr13:34922094..34922105, +
4.66e-66FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_fd449d7c45f1b7227f6c9fcce29a31bap@chr9:79516011..79516022, -
1.46e-50FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_e5a8ce706b31c1f73ffd2233bd1c205cp@chr9:108178201..108178203, +
1.46e-50FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_e5a8ce706b31c1f73ffd2233bd1c205cp@chrX:28627633..28627642, +
1.46e-50FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_e5a8ce706b31c1f73ffd2233bd1c205cp@chrX:28627633..28627642, +
1.46e-50FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_e5a8ce706b31c1f73ffd2233bd1c205cp@chr9:108178201..108178203, +
3.99e-50FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_5884383296f1fb2b0a521d6e821ca7bb+, p@chr3:50717966..50717971
3.99e-50FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_5884383296f1fb2b0a521d6e821ca7bbp@chr3:50717966..50717971, +
3.99e-50FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_5884383296f1fb2b0a521d6e821ca7bbp@chr20:52570026..52570037, -
3.99e-50FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_5884383296f1fb2b0a521d6e821ca7bbp@chr6:134626498..134626502, -
3.99e-50FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_5884383296f1fb2b0a521d6e821ca7bbp@chr6:89803656..89803659, +
3.99e-50FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_5884383296f1fb2b0a521d6e821ca7bbp@chr20:52570026..52570037, -
3.99e-50FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_5884383296f1fb2b0a521d6e821ca7bbp@chr6:134626498..134626502, -
3.99e-50FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_5884383296f1fb2b0a521d6e821ca7bbp@chr6:89803656..89803659, +
6.58e-50FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_2ef63967c4239e70449c0ae05a8e1749p@chr17:3479944..3479947, -
6.58e-50FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_2ef63967c4239e70449c0ae05a8e1749p10@KCNJ10
6.58e-50FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_2ef63967c4239e70449c0ae05a8e1749p10@KCNJ10
6.58e-50FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_2ef63967c4239e70449c0ae05a8e1749p@chr9:137240632..137240635, +
6.58e-50FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_2ef63967c4239e70449c0ae05a8e1749p2@LOC285796
6.58e-50FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_2ef63967c4239e70449c0ae05a8e1749p@chr9:137240632..137240635, +
6.58e-50FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_2ef63967c4239e70449c0ae05a8e1749-, p@chr1:161275096..161275109
6.58e-50FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_2ef63967c4239e70449c0ae05a8e1749p@chr18:26665245..26665249, +
6.58e-50FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_2ef63967c4239e70449c0ae05a8e1749p@chr9:19515907..19515918, -
6.58e-50FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_2ef63967c4239e70449c0ae05a8e1749p21@PLEKHG1
6.58e-50FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_2ef63967c4239e70449c0ae05a8e1749p21@PLEKHG1
6.58e-50FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_2ef63967c4239e70449c0ae05a8e1749p@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_2ef63967c4239e70449c0ae05a8e1749p@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_2ef63967c4239e70449c0ae05a8e1749-, p@chr17:3479944..3479947
6.58e-50FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_2ef63967c4239e70449c0ae05a8e1749p@chr1:161275096..161275109, -
6.58e-50FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_2ef63967c4239e70449c0ae05a8e1749p2@LOC285796
6.58e-50FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_2ef63967c4239e70449c0ae05a8e1749p@chr18:26665245..26665249, +
6.58e-50FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_2ef63967c4239e70449c0ae05a8e1749p@chr17:70910145..70910148, -
6.58e-50FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_2ef63967c4239e70449c0ae05a8e1749p@chr9:19515907..19515918, -
6.58e-50FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_2ef63967c4239e70449c0ae05a8e1749p@chr17:70910145..70910148, -
2.38e-43FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_4403ce2cab20455902a71871ad3aabbep@chr19:40804786..40804795, -
2.38e-43FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_4403ce2cab20455902a71871ad3aabbep@chr19:40804786..40804795, -
6.62e-41FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_d9664c16ef6ac65725191592ce29be43p4@C5orf64
6.62e-41FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_d9664c16ef6ac65725191592ce29be43p4@C5orf64
6.62e-41FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_d9664c16ef6ac65725191592ce29be43p@chr4:139891920..139891924, -
6.62e-41FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_d9664c16ef6ac65725191592ce29be43p@chr4:139891920..139891924, -
9.91e-41FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_662cc2a2211374e97162d4d078d40b39p@chr5:152017019..152017026, +
9.91e-41FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_662cc2a2211374e97162d4d078d40b39p@chr5:152017019..152017026, +
9.91e-41FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_662cc2a2211374e97162d4d078d40b39p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_662cc2a2211374e97162d4d078d40b39p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_662cc2a2211374e97162d4d078d40b39p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_662cc2a2211374e97162d4d078d40b39p@chrX:13792462..13792477, -
1.48e-40FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp10@CELSR2
1.48e-40FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr9:139911084..139911102, -
1.48e-40FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr2:135170207..135170218, +
1.48e-40FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr2:135170207..135170218, +
1.48e-40FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr1:161275238..161275250, -
1.48e-40FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr17:71046459..71046462, -
1.48e-40FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d-, p@chr9:139911084..139911102
1.48e-40FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr17:71046459..71046462, -
1.48e-40FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp10@CELSR2
1.48e-40FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr1:161275238..161275250, -
2.21e-40FFCP PHASE1:Hg19::chrX:103046993..103046994,+#_605c9bbf4e7696c6f9c981d61308471dp@chrX:103046993..103046994, +
2.21e-40FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_605c9bbf4e7696c6f9c981d61308471dp19@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr9:19513297..19513309,-#_605c9bbf4e7696c6f9c981d61308471dp4@SLC24A2
2.21e-40FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_605c9bbf4e7696c6f9c981d61308471dp19@ADARB2
2.21e-40FFCP PHASE1:Hg19::chr8:27522642..27522647,+#_605c9bbf4e7696c6f9c981d61308471dp@chr8:27522642..27522647, +
2.21e-40FFCP PHASE2:Hg19::chr10:1246245..1246252,-#_605c9bbf4e7696c6f9c981d61308471dp20@ADARB2