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UBERON:0003891

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Name:stroma
Namespace:FANTOM
Definition:"connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma." [Wikipedia:Stroma_of_ovary_%28animal_tissue%29]
Xrefs:
links:

FMA:81494

ncithesaurus:Stroma_Connective_Tissue

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000064(organ part)



Children

is a:UBERON:0001777 (substantia propria of cornea),UBERON:0002319 (mesangium),UBERON:0002321 (extraglomerular mesangium),UBERON:0005169 (interstitial tissue)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003891 (stroma), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.1e-50FFCP PHASE1:Hg19::chr7:150910973..150910976,-#_ed91efed8cae188a2525747f14883032p@chr7:150910973..150910976, -
3.1e-50FFCP PHASE2:Hg19::chr3:52362029..52362031,+#_ed91efed8cae188a2525747f14883032p@chr3:52362029..52362031, +
3.1e-50FFCP PHASE2:Hg19::chr7:150910973..150910976,-#_ed91efed8cae188a2525747f14883032p@chr7:150910973..150910976, -
3.1e-50FFCP PHASE1:Hg19::chr3:52362029..52362031,+#_ed91efed8cae188a2525747f14883032p@chr3:52362029..52362031, +
2.22e-40FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_003544a64a800699856f19b394e10821p@chr2:133426030..133426041, -
2.22e-40FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_003544a64a800699856f19b394e10821p@chr2:133426030..133426041, -
2.71e-40FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_c6a02a8fad1d5c73996bd5d071292764p23@TTC39A
2.71e-40FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_c6a02a8fad1d5c73996bd5d071292764p23@TTC39A
7.07e-34FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_5e1e0e397fd2fc23db418bba10a5ee1bp@chr2:133426106..133426117, -
7.07e-34FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_5e1e0e397fd2fc23db418bba10a5ee1bp@chr2:133426106..133426117, -
2.63e-26FFCP PHASE2:Hg19::chr1:145589059..145589070,-#_fc3af989a49a4931857dd94cd94f9cdcp3@NUDT17
2.63e-26FFCP PHASE1:Hg19::chr1:145589059..145589070,-#_fc3af989a49a4931857dd94cd94f9cdcp3@NUDT17
6.73e-26FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_9b630a56802e10912124b598a79a6b38p8@PAX2
6.73e-26FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_9b630a56802e10912124b598a79a6b38p@chr10:134535354..134535366, -
6.73e-26FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_9b630a56802e10912124b598a79a6b38p@chr10:134535354..134535366, -
6.73e-26FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_9b630a56802e10912124b598a79a6b38p8@PAX2
7.14e-26FFCP PHASE1:Hg19::chr10:92617531..92617541,-#_481c0431e2cb86b0aa78c75a570d40cbp8@HTR7
7.14e-26FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_481c0431e2cb86b0aa78c75a570d40cbp10@PAX2
7.14e-26FFCP PHASE2:Hg19::chr6:113369869..113369877,+#_481c0431e2cb86b0aa78c75a570d40cbp@chr6:113369869..113369877, +
7.14e-26FFCP PHASE2:Hg19::chr8:22932230..22932233,-#_481c0431e2cb86b0aa78c75a570d40cbp5@ENST00000520840, p5@ENST00000523806
7.14e-26FFCP PHASE2:Hg19::chr10:92617531..92617541,-#_481c0431e2cb86b0aa78c75a570d40cbp8@HTR7
7.14e-26FFCP PHASE2:Hg19::chr15:49255230..49255248,-#_481c0431e2cb86b0aa78c75a570d40cbp16@SHC4
7.14e-26FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_481c0431e2cb86b0aa78c75a570d40cbp@chr9:81641483..81641491, -
7.14e-26FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_481c0431e2cb86b0aa78c75a570d40cbp@chr9:81641483..81641491, -
7.14e-26FFCP PHASE1:Hg19::chr15:49255230..49255248,-#_481c0431e2cb86b0aa78c75a570d40cbp16@SHC4
7.14e-26FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_481c0431e2cb86b0aa78c75a570d40cbp10@PAX2
7.14e-26FFCP PHASE1:Hg19::chr8:22932230..22932233,-#_481c0431e2cb86b0aa78c75a570d40cbp5@ENST00000520840, p5@ENST00000523806
7.14e-26FFCP PHASE1:Hg19::chr6:113369869..113369877,+#_481c0431e2cb86b0aa78c75a570d40cbp@chr6:113369869..113369877, +
9.82e-26FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_9b0396dc1db922f06a85405b1ce35859p19@PEMT
9.82e-26FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_9b0396dc1db922f06a85405b1ce35859p19@PEMT
7.18e-23FFCP PHASE1:Hg19::chr11:124629023..124629069,+#_a84b043358ce3fce5fcb9161e286a476p1@ENST00000504932
7.18e-23FFCP PHASE2:Hg19::chr11:124629023..124629069,+#_a84b043358ce3fce5fcb9161e286a476p1@ENST00000504932
5.72e-21FFCP PHASE1:Hg19::chr17:171082..171101,+#_049994bfbd18f0e0956d4fbd83260448p@chr17:171082..171101, +
5.72e-21FFCP PHASE2:Hg19::chr17:171082..171101,+#_049994bfbd18f0e0956d4fbd83260448p@chr17:171082..171101, +
6.33e-21FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_8724491dc733c63a469ac495b490c359p@chr3:172384246..172384250, +
6.33e-21FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_8724491dc733c63a469ac495b490c359p@chr3:172384246..172384250, +
7.74e-21FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_71de51b5eb8c9f7718864013ded11c0f+, p@chr1:45087902..45087912
7.74e-21FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_71de51b5eb8c9f7718864013ded11c0fp@chr1:45087902..45087912, +
1.15e-20FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_099b9459c62b68873514047a6089dd1bp5@PAX2
1.15e-20FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_099b9459c62b68873514047a6089dd1bp5@PAX2
1.56e-20FFCP PHASE1:Hg19::chr17:38498236..38498251,+#_a3f0792b76a8ec65de240203c1a2ea3bp24@RARA
1.56e-20FFCP PHASE2:Hg19::chr17:38498236..38498251,+#_a3f0792b76a8ec65de240203c1a2ea3bp24@RARA
5.64e-19FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_db45090fc08cd70e2434889a4ae9cabfp6@PAX2
5.64e-19FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_db45090fc08cd70e2434889a4ae9cabfp6@PAX2
5.84e-19FFCP PHASE1:Hg19::chr20:25176603..25176614,+#_ceeca1c6aa30470d023a6203a780a19fp@chr20:25176603..25176614, +
5.84e-19FFCP PHASE2:Hg19::chr20:25176603..25176614,+#_ceeca1c6aa30470d023a6203a780a19fp@chr20:25176603..25176614, +
6.18e-19FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_b20dfeb9ceafa21666af1341a725e185p3@CRB2
6.18e-19FFCP PHASE2:Hg19::chr9:114808729..114808743,+#_b20dfeb9ceafa21666af1341a725e185p@chr9:114808729..114808743, +
6.18e-19FFCP PHASE1:Hg19::chr9:114808729..114808743,+#_b20dfeb9ceafa21666af1341a725e185p@chr9:114808729..114808743, +
6.18e-19FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_b20dfeb9ceafa21666af1341a725e185p3@CRB2
3.48e-18FFCP PHASE1:Hg19::chr6:35464729..35464738,-#_acf5652c3b221e0ef70a8ae429b578ffp3@TEAD3
3.48e-18FFCP PHASE2:Hg19::chr6:35464729..35464738,-#_acf5652c3b221e0ef70a8ae429b578ffp3@TEAD3
7.62e-18FFCP PHASE2:Hg19::chr10:33624581..33624593,-#_3063d95ad89b866d8d7f2f795a54e5dap@chr10:33624581..33624593, -
7.62e-18FFCP PHASE1:Hg19::chr10:33624581..33624593,-#_3063d95ad89b866d8d7f2f795a54e5dap@chr10:33624581..33624593, -
8.69e-18FFCP PHASE1:Hg19::chr1:44820685..44820695,-#_6f0c1e9c17e33de8d2550561e970e938p10@ERI3
8.69e-18FFCP PHASE1:Hg19::chr21:47410794..47410799,+#_6f0c1e9c17e33de8d2550561e970e938p@chr21:47410794..47410799, +
8.69e-18FFCP PHASE2:Hg19::chr21:47410794..47410799,+#_6f0c1e9c17e33de8d2550561e970e938p@chr21:47410794..47410799, +
8.69e-18FFCP PHASE1:Hg19::chr6:151770193..151770196,-#_6f0c1e9c17e33de8d2550561e970e938p@chr6:151770193..151770196, -
8.69e-18FFCP PHASE2:Hg19::chr1:44820685..44820695,-#_6f0c1e9c17e33de8d2550561e970e938p10@ERI3
8.69e-18FFCP PHASE2:Hg19::chr6:151770193..151770196,-#_6f0c1e9c17e33de8d2550561e970e938p@chr6:151770193..151770196, -
1.03e-17FFCP PHASE2:Hg19::chr1:858638..858648,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr1:858638..858648, +
1.03e-17FFCP PHASE2:Hg19::chr15:101459410..101459421,-#_c020f83ad058f2a4b6b48ef71f4693b8p2@ENST00000560068
1.03e-17FFCP PHASE1:Hg19::chr11:65265332..65265342,+#_c020f83ad058f2a4b6b48ef71f4693b8p19@MALAT1
1.03e-17FFCP PHASE2:Hg19::chr11:65265332..65265342,+#_c020f83ad058f2a4b6b48ef71f4693b8p19@MALAT1
1.03e-17FFCP PHASE1:Hg19::chr5:79375654..79375674,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr5:79375654..79375674, +
1.03e-17FFCP PHASE1:Hg19::chr2:25383828..25383855,-#_c020f83ad058f2a4b6b48ef71f4693b8p4@POMC
1.03e-17FFCP PHASE1:Hg19::chr1:858638..858648,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr1:858638..858648, +
1.03e-17FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr10:74020629..74020634, -
1.03e-17FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr7:27164585..27164612, -
1.03e-17FFCP PHASE2:Hg19::chr2:25383828..25383855,-#_c020f83ad058f2a4b6b48ef71f4693b8p4@POMC
1.03e-17FFCP PHASE1:Hg19::chr11:555661..555679,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr11:555661..555679, +
1.03e-17FFCP PHASE2:Hg19::chr10:43133595..43133606,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr10:43133595..43133606, -
1.03e-17FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr7:27164585..27164612, -
1.03e-17FFCP PHASE1:Hg19::chr1:9970194..9970195,-#_c020f83ad058f2a4b6b48ef71f4693b8p14@CTNNBIP1
1.03e-17FFCP PHASE2:Hg19::chr5:79375654..79375674,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr5:79375654..79375674, +
1.03e-17FFCP PHASE1:Hg19::chr10:43133595..43133606,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr10:43133595..43133606, -
1.03e-17FFCP PHASE1:Hg19::chr15:101459410..101459421,-#_c020f83ad058f2a4b6b48ef71f4693b8p2@ENST00000560068
1.03e-17FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr10:74020629..74020634, -
1.03e-17FFCP PHASE2:Hg19::chr11:555661..555679,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr11:555661..555679, +
1.03e-17FFCP PHASE2:Hg19::chr1:9970194..9970195,-#_c020f83ad058f2a4b6b48ef71f4693b8p14@CTNNBIP1
1.57e-17FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_7d129ad8535ee1af87df3a838fb5b15ap@chr2:113984760..113984792, +
1.57e-17FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_7d129ad8535ee1af87df3a838fb5b15ap@chr2:113984760..113984792, +
1.86e-17FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_819c5304a24d600b1ed05546f6460691p13@SPOCK2
1.86e-17FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_819c5304a24d600b1ed05546f6460691p13@SPOCK2
2.19e-17FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_6fbb88ce43e10ef0ba676a99754fd6bbp25@PHLDB1
2.19e-17FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_6fbb88ce43e10ef0ba676a99754fd6bbp25@PHLDB1
1.21e-16FFCP PHASE1:Hg19::chr2:693362..693373,+#_94fc48997abda1b97bd6635e3e775208p@chr2:693362..693373, +
1.21e-16FFCP PHASE2:Hg19::chr2:693362..693373,+#_94fc48997abda1b97bd6635e3e775208p@chr2:693362..693373, +
3.32e-16FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_fced78c7663172238db7194917c27c36p1@RIPPLY1
3.32e-16FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_fced78c7663172238db7194917c27c36p@chr7:140227349..140227360, -
3.32e-16FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_fced78c7663172238db7194917c27c36p@chr7:140227349..140227360, -
3.32e-16FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_fced78c7663172238db7194917c27c36p1@RIPPLY1
5.26e-16FFCP PHASE2:Hg19::chr4:111536534..111536575,-#_2124076af279238b4b575c37400ecef9p1@ENST00000503456
5.26e-16FFCP PHASE1:Hg19::chr4:111536534..111536575,-#_2124076af279238b4b575c37400ecef9p1@ENST00000503456
6.61e-16FFCP PHASE1:Hg19::chr19:45261267..45261280,+#_73d1e661742defca2c5b950f4398433ep@chr19:45261267..45261280, +
6.61e-16FFCP PHASE2:Hg19::chr19:45261267..45261280,+#_73d1e661742defca2c5b950f4398433e+, p@chr19:45261267..45261280
1.92e-15FFCP PHASE1:Hg19::chr17:171147..171161,+#_cf8992eb43cc5b19bddd853293a09d7bp@chr17:171147..171161, +
1.92e-15FFCP PHASE2:Hg19::chr17:171147..171161,+#_cf8992eb43cc5b19bddd853293a09d7bp@chr17:171147..171161, +
3.67e-15FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_28e67dc11b65686822a56c4f9a523d90-, p@chr2:165477405..165477418
3.67e-15FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_28e67dc11b65686822a56c4f9a523d90p@chr2:165477405..165477418, -