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UBERON:0006514

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Name:pallidum
Namespace:FANTOM
Definition:"Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [http://www.medterms.com/script/main/art.asp?articlekey
Xrefs:
links:

ABA:PAL
FMA:83684

MA:0000889
Synonyms: "neuraxis pallidum" EXACT [FMA:83684]
"pallidum of neuraxis" EXACT [FMA:83684]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0003528(brain grey matter)
part_of:UBERON:0002420(basal ganglion)



Children

part of:UBERON:0001875 (globus pallidus)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006514 (pallidum), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_fcdca617c822f176b0920fb665af5ebbp1@GNRH1
1.55e-98FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_fcdca617c822f176b0920fb665af5ebbp1@GNRH1
2.34e-79FFCP PHASE1:Hg19::chr8:112039724..112039729,-#_7cb551099be96768f1bbc050be1b21c5p5@ENST00000524283
2.34e-79FFCP PHASE1:Hg19::chr4:16728994..16729009,+#_7cb551099be96768f1bbc050be1b21c5p@chr4:16728994..16729009, +
2.34e-79FFCP PHASE2:Hg19::chr4:16728994..16729009,+#_7cb551099be96768f1bbc050be1b21c5p@chr4:16728994..16729009, +
2.34e-79FFCP PHASE2:Hg19::chr8:112039724..112039729,-#_7cb551099be96768f1bbc050be1b21c5p5@ENST00000524283
5.22e-79FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_c2517cdfd5aae29ba7f221991615fee5p4@C5orf64
5.22e-79FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_c2517cdfd5aae29ba7f221991615fee5p4@C5orf64
2.84e-66FFCP PHASE1:Hg19::chr8:53314470..53314473,-#_75799ce66d10c83d8eafac9143deaf3dp@chr8:53314470..53314473, -
2.84e-66FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_75799ce66d10c83d8eafac9143deaf3d-, p@chr8:57353676..57353688
2.84e-66FFCP PHASE2:Hg19::chr8:53314470..53314473,-#_75799ce66d10c83d8eafac9143deaf3dp@chr8:53314470..53314473, -
2.84e-66FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_75799ce66d10c83d8eafac9143deaf3dp@chr8:57353676..57353688, -
3.58e-57FFCP PHASE2:Hg19::chr12:57979084..57979088,+#_4bf07519dc6a1aa2558dc5e11d2fc587p5@uc001sos.2
3.58e-57FFCP PHASE1:Hg19::chr12:57979084..57979088,+#_4bf07519dc6a1aa2558dc5e11d2fc587p5@uc001sos.2
4.77e-57FFCP PHASE2:Hg19::chr14:68030467..68030470,+#_a39d031121e397acf5346f99d1641039p@chr14:68030467..68030470, +
4.77e-57FFCP PHASE1:Hg19::chr14:68030467..68030470,+#_a39d031121e397acf5346f99d1641039p@chr14:68030467..68030470, +
6.36e-57FFCP PHASE2:Hg19::chr2:234077664..234077672,+#_3ecfba0a4d674f4b59ed3b93650b15acp@chr2:234077664..234077672, +
6.36e-57FFCP PHASE1:Hg19::chr2:234077664..234077672,+#_3ecfba0a4d674f4b59ed3b93650b15acp@chr2:234077664..234077672, +
2.0e-56FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bfp@chr2:7112752..7112770, +
2.0e-56FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bfp@chr2:7112752..7112770, +
2.0e-56FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bfp3@ENST00000413244
2.0e-56FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bfp3@ENST00000413244
2.42e-50FFCP PHASE2:Hg19::chr2:211384439..211384442,+#_35b2696ea2174e0b840411fe81db4fc4p@chr2:211384439..211384442, +
2.42e-50FFCP PHASE1:Hg19::chr2:211384439..211384442,+#_35b2696ea2174e0b840411fe81db4fc4p@chr2:211384439..211384442, +
2.74e-50FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_3ec27225d118cbfba838994e5a4bbfd9p@chr1:65776926..65776928, +
2.74e-50FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_3ec27225d118cbfba838994e5a4bbfd9p@chr1:65776926..65776928, +
4.0e-50FFCP PHASE1:Hg19::chr2:44994986..44994992,-#_5e3a55b1f2015b2654b0f39a143a3e79p@chr2:44994986..44994992, -
4.0e-50FFCP PHASE2:Hg19::chr2:44994986..44994992,-#_5e3a55b1f2015b2654b0f39a143a3e79p@chr2:44994986..44994992, -
4.52e-50FFCP PHASE1:Hg19::chr3:196731042..196731058,-#_54924227c21d8d9b8fb6aa86b2326f9ep6@MFI2
4.52e-50FFCP PHASE1:Hg19::chr9:88473657..88473661,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr9:88473657..88473661, +
4.52e-50FFCP PHASE2:Hg19::chr1:110546475..110546482,+#_54924227c21d8d9b8fb6aa86b2326f9ep27@AHCYL1
4.52e-50FFCP PHASE2:Hg19::chr4:16729019..16729026,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr4:16729019..16729026, +
4.52e-50FFCP PHASE2:Hg19::chr12:79843826..79843829,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr12:79843826..79843829, +
4.52e-50FFCP PHASE1:Hg19::chr1:160111883..160111891,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr1:160111883..160111891, +
4.52e-50FFCP PHASE1:Hg19::chr1:110546475..110546482,+#_54924227c21d8d9b8fb6aa86b2326f9ep27@AHCYL1
4.52e-50FFCP PHASE2:Hg19::chr1:160111883..160111891,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr1:160111883..160111891, +
4.52e-50FFCP PHASE1:Hg19::chrX:2291152..2291163,-#_54924227c21d8d9b8fb6aa86b2326f9ep@chrX:2291152..2291163, -
4.52e-50FFCP PHASE2:Hg19::chr7:11676048..11676067,-#_54924227c21d8d9b8fb6aa86b2326f9ep23@THSD7A
4.52e-50FFCP PHASE2:Hg19::chr9:88473657..88473661,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr9:88473657..88473661, +
4.52e-50FFCP PHASE2:Hg19::chr3:196731042..196731058,-#_54924227c21d8d9b8fb6aa86b2326f9ep6@MFI2
4.52e-50FFCP PHASE2:Hg19::chrX:2291152..2291163,-#_54924227c21d8d9b8fb6aa86b2326f9ep@chrX:2291152..2291163, -
4.52e-50FFCP PHASE1:Hg19::chr12:79843826..79843829,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr12:79843826..79843829, +
4.52e-50FFCP PHASE1:Hg19::chr7:11676048..11676067,-#_54924227c21d8d9b8fb6aa86b2326f9ep23@THSD7A
4.52e-50FFCP PHASE1:Hg19::chr4:16729019..16729026,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr4:16729019..16729026, +
5.15e-50FFCP PHASE2:Hg19::chr15:30305145..30305156,+#_6b9ab164aab0a0cc2abaf96f6d33e8d9p@chr15:30305145..30305156, +
5.15e-50FFCP PHASE1:Hg19::chr15:30305145..30305156,+#_6b9ab164aab0a0cc2abaf96f6d33e8d9p@chr15:30305145..30305156, +
8.5e-50FFCP PHASE2:Hg19::chr20:45062233..45062265,+#_778487169797adfdda939adaa449343ap1@AK054905
8.5e-50FFCP PHASE1:Hg19::chr20:45062233..45062265,+#_778487169797adfdda939adaa449343ap1@AK054905
1.09e-49FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_31c852b608e4f5dc118ee04fe2b957b9p10@PTPN5
1.09e-49FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_31c852b608e4f5dc118ee04fe2b957b9p10@PTPN5
2.04e-45FFCP PHASE2:Hg19::chr3:42687264..42687266,-#_2a5e59d3e97e1124d0eb5f8c3448498bp@chr3:42687264..42687266, -
2.04e-45FFCP PHASE1:Hg19::chr3:42687264..42687266,-#_2a5e59d3e97e1124d0eb5f8c3448498bp@chr3:42687264..42687266, -
7.83e-45FFCP PHASE1:Hg19::chr7:92123292..92123295,+#_ac36395ac55d5068f2ed7a904a04b293p@chr7:92123292..92123295, +
7.83e-45FFCP PHASE2:Hg19::chr4:648979..648991,-#_ac36395ac55d5068f2ed7a904a04b293p1@ENST00000489312
7.83e-45FFCP PHASE2:Hg19::chr1:109924481..109924486,-#_ac36395ac55d5068f2ed7a904a04b293p@chr1:109924481..109924486, -
7.83e-45FFCP PHASE1:Hg19::chr1:109924481..109924486,-#_ac36395ac55d5068f2ed7a904a04b293p@chr1:109924481..109924486, -
7.83e-45FFCP PHASE2:Hg19::chr7:92123292..92123295,+#_ac36395ac55d5068f2ed7a904a04b293p@chr7:92123292..92123295, +
7.83e-45FFCP PHASE1:Hg19::chr4:648979..648991,-#_ac36395ac55d5068f2ed7a904a04b293p1@ENST00000489312
9.79e-45FFCP PHASE2:Hg19::chr8:53313114..53313126,-#_30f25d9d821c2ef09c7c89198d38e7b7p@chr8:53313114..53313126, -
9.79e-45FFCP PHASE1:Hg19::chr8:53313114..53313126,-#_30f25d9d821c2ef09c7c89198d38e7b7p@chr8:53313114..53313126, -
1.22e-44FFCP PHASE2:Hg19::chr8:53312268..53312283,-#_29a14953f0998f34b7604f85c25138e0p@chr8:53312268..53312283, -
1.22e-44FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_29a14953f0998f34b7604f85c25138e0p@chr3:16851273..16851310, +
1.22e-44FFCP PHASE1:Hg19::chr8:53312268..53312283,-#_29a14953f0998f34b7604f85c25138e0p@chr8:53312268..53312283, -
1.22e-44FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_29a14953f0998f34b7604f85c25138e0p@chr3:16851273..16851310, +
1.22e-44FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_29a14953f0998f34b7604f85c25138e0p@chr7:67899920..67899958, -
1.22e-44FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_29a14953f0998f34b7604f85c25138e0p@chr7:67899920..67899958, -
1.53e-44FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_2e57326e6161ca889d37e26403b111b5p5@ANO3
1.53e-44FFCP PHASE2:Hg19::chrX:119589796..119589800,-#_2e57326e6161ca889d37e26403b111b5p@chrX:119589796..119589800, -
1.53e-44FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_2e57326e6161ca889d37e26403b111b5p5@ANO3
1.53e-44FFCP PHASE1:Hg19::chrX:119589796..119589800,-#_2e57326e6161ca889d37e26403b111b5p@chrX:119589796..119589800, -
1.91e-44FFCP PHASE2:Hg19::chr7:35756400..35756409,+#_293fedc4198402bccca13e66349aa38cp4@ENST00000458087, p4@uc003tew.1
1.91e-44FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_293fedc4198402bccca13e66349aa38cp@chr17:19390234..19390251, +
1.91e-44FFCP PHASE1:Hg19::chr9:139907538..139907555,-#_293fedc4198402bccca13e66349aa38cp25@ABCA2
1.91e-44FFCP PHASE2:Hg19::chr9:139907538..139907555,-#_293fedc4198402bccca13e66349aa38cp25@ABCA2
1.91e-44FFCP PHASE1:Hg19::chr7:35756400..35756409,+#_293fedc4198402bccca13e66349aa38cp4@ENST00000458087, p4@uc003tew.1
1.91e-44FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_293fedc4198402bccca13e66349aa38c+, p@chr17:19390234..19390251
1.91e-44FFCP PHASE2:Hg19::chr5:148442824..148442835,+#_293fedc4198402bccca13e66349aa38cp4@ENST00000515519
1.91e-44FFCP PHASE1:Hg19::chr5:148442824..148442835,+#_293fedc4198402bccca13e66349aa38cp4@ENST00000515519
2.98e-44FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_cdb24e23965af03eabfef9555b0bf12ap28@ARPP21
2.98e-44FFCP PHASE2:Hg19::chr3:50306390..50306399,+#_cdb24e23965af03eabfef9555b0bf12ap8@SEMA3B
2.98e-44FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_cdb24e23965af03eabfef9555b0bf12ap28@ARPP21
2.98e-44FFCP PHASE1:Hg19::chr3:50306390..50306399,+#_cdb24e23965af03eabfef9555b0bf12ap8@SEMA3B
1.34e-40FFCP PHASE1:Hg19::chr19:35789028..35789044,+#_0a5aba0d677de034908ef16c239f496fp@chr19:35789028..35789044, +
1.34e-40FFCP PHASE2:Hg19::chr19:35789028..35789044,+#_0a5aba0d677de034908ef16c239f496fp@chr19:35789028..35789044, +
2.01e-40FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_6d1bd0e11699ae7602ca76a79f5af94cp@chr6:166076645..166076657, -
2.01e-40FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_6d1bd0e11699ae7602ca76a79f5af94cp@chr6:166076645..166076657, -
2.46e-40FFCP PHASE2:Hg19::chr16:51302023..51302029,-#_d5bd6e1f74ac29acdc8e92c4f68478cdp@chr16:51302023..51302029, -
2.46e-40FFCP PHASE1:Hg19::chr16:51302023..51302029,-#_d5bd6e1f74ac29acdc8e92c4f68478cdp@chr16:51302023..51302029, -
3.01e-40FFCP PHASE1:Hg19::chr11:119846813..119846826,+#_f63fca0cad51c568a0beeb6297693110p@chr11:119846813..119846826, +
3.01e-40FFCP PHASE2:Hg19::chr11:119846813..119846826,+#_f63fca0cad51c568a0beeb6297693110p@chr11:119846813..119846826, +
3.68e-40FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_70fe223d9776c56246d6d88088a66448p6@PTPN5
3.68e-40FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_70fe223d9776c56246d6d88088a66448p2@ENST00000413244
3.68e-40FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_70fe223d9776c56246d6d88088a66448p2@ENST00000413244
3.68e-40FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_70fe223d9776c56246d6d88088a66448p6@PTPN5
4.49e-40FFCP PHASE1:Hg19::chr6:33161034..33161047,-#_52d059b90af7dd5d02e7bc0d1de4580cp@chr6:33161034..33161047, -
4.49e-40FFCP PHASE2:Hg19::chr6:33161034..33161047,-#_52d059b90af7dd5d02e7bc0d1de4580cp@chr6:33161034..33161047, -
4.49e-40FFCP PHASE2:Hg19::chr1:84413166..84413168,-#_52d059b90af7dd5d02e7bc0d1de4580cp4@TTLL7
4.49e-40FFCP PHASE1:Hg19::chr22:50431522..50431538,-#_52d059b90af7dd5d02e7bc0d1de4580cp@chr22:50431522..50431538, -
4.49e-40FFCP PHASE1:Hg19::chr1:84413166..84413168,-#_52d059b90af7dd5d02e7bc0d1de4580cp4@TTLL7
4.49e-40FFCP PHASE2:Hg19::chr22:50431522..50431538,-#_52d059b90af7dd5d02e7bc0d1de4580cp@chr22:50431522..50431538, -