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UBERON:0010009

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Name:aggregate regional part of brain
Namespace:FANTOM
Definition:"A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NIF_GrossAnatomy:nlx_anat_20090509]
Xrefs:
links:

FMA:256381

NIF_GrossAnatomy:nlx_anat_20090509
Synonyms: "set of nuclei of neuraxis" EXACT [FMA:256381]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002616(regional part of brain)



Children

is a:UBERON:0010011 (collection of basal ganglia)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010009 (aggregate regional part of brain), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.82e-133FFCP PHASE1:Hg19::chr18:11751466..11751475,+#_f5aeaddf46c23a6bf89eb166a044e268p22@GNAL
1.82e-133FFCP PHASE2:Hg19::chr18:11751466..11751475,+#_f5aeaddf46c23a6bf89eb166a044e268p22@GNAL
1.42e-130FFCP PHASE2:Hg19::chr15:40582949..40582989,+#_0d5e60ea51f41a9dd5f38e786e277b34p@chr15:40582949..40582989, +
1.42e-130FFCP PHASE1:Hg19::chr15:40582949..40582989,+#_0d5e60ea51f41a9dd5f38e786e277b34p@chr15:40582949..40582989, +
1.21e-118FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_9eeb0a3ec917130a8471370d3e7c0037p28@ARPP21
1.21e-118FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_9eeb0a3ec917130a8471370d3e7c0037p28@ARPP21
3.02e-112FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_22c890d6eec46d762516903755acb474p@chr13:98995904..98995913, +
3.02e-112FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_22c890d6eec46d762516903755acb474p@chr13:98995904..98995913, +
3.66e-112FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_97817e3c73366744c13b77f293304e33p@chr11:80886203..80886231, +
3.66e-112FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_97817e3c73366744c13b77f293304e33p@chr11:80886203..80886231, +
6.51e-112FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_b53229448965931f8ba586f4e972f0bcp@chr2:7112752..7112770, +
6.51e-112FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_b53229448965931f8ba586f4e972f0bcp@chr2:7112752..7112770, +
7.88e-112FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_1a86cfb26b5d299b09f6e3da4e769829p3@ENST00000413244
7.88e-112FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_1a86cfb26b5d299b09f6e3da4e769829p3@ENST00000413244
4.6e-109FFCP PHASE2:Hg19::chr19:719510..719520,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr19:719510..719520, +
4.6e-109FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr2:3853961..3853984, +
4.6e-109FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_fc5bdd5c406b7fef78f66cccaca3f573p@chr15:35546024..35546035, -
4.6e-109FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr17:19390211..19390223, +
4.6e-109FFCP PHASE1:Hg19::chr19:719510..719520,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr19:719510..719520, +
4.6e-109FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr2:3853961..3853984, +
4.6e-109FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr17:19390211..19390223, +
4.6e-109FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_fc5bdd5c406b7fef78f66cccaca3f573p@chr15:35546024..35546035, -
4.01e-107FFCP PHASE2:Hg19::chr18:11751516..11751523,+#_96971685d46c45cd9e21e0cf05fa2a9ap17@GNAL
4.01e-107FFCP PHASE1:Hg19::chr18:11751516..11751523,+#_96971685d46c45cd9e21e0cf05fa2a9ap17@GNAL
1.41e-106FFCP PHASE1:Hg19::chr21:43917191..43917207,-#_ff842847903ef1bdac1f16d7f71ffd9ap@chr21:43917191..43917207, -
1.41e-106FFCP PHASE2:Hg19::chr21:43917191..43917207,-#_ff842847903ef1bdac1f16d7f71ffd9ap@chr21:43917191..43917207, -
3.33e-98FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_ff05fdecc10a0831f767d47b6c3e34d4p10@PTPN5
3.33e-98FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_ff05fdecc10a0831f767d47b6c3e34d4p10@PTPN5
1.43e-97FFCP PHASE1:Hg19::chr13:98995923..98995941,+#_dca22e73be6ec84997d3e3fade24f22c+, p@chr13:98995923..98995941
1.43e-97FFCP PHASE2:Hg19::chr13:98995923..98995941,+#_dca22e73be6ec84997d3e3fade24f22cp@chr13:98995923..98995941, +
4.08e-91FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_0ef7d5d2df23c7e3c03af93fe7a37758p@chr10:97261901..97261919, -
4.08e-91FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_0ef7d5d2df23c7e3c03af93fe7a37758p@chr11:26497871..26497889, +
4.08e-91FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_0ef7d5d2df23c7e3c03af93fe7a37758p@chr10:97261901..97261919, -
4.08e-91FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_0ef7d5d2df23c7e3c03af93fe7a37758p@chr11:26497871..26497889, +
4.91e-91FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_152f121951bc63186e1c9002ebbe4accp8@ANO3
4.91e-91FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_152f121951bc63186e1c9002ebbe4accp1@ENST00000421878
4.91e-91FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_152f121951bc63186e1c9002ebbe4accp14@ADORA2A
4.91e-91FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_152f121951bc63186e1c9002ebbe4accp@chr19:1236637..1236645, -
4.91e-91FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_152f121951bc63186e1c9002ebbe4accp@chr19:1236637..1236645, -
4.91e-91FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_152f121951bc63186e1c9002ebbe4accp8@ANO3
4.91e-91FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_152f121951bc63186e1c9002ebbe4accp14@ADORA2A
4.91e-91FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_152f121951bc63186e1c9002ebbe4accp1@ENST00000421878
1.7e-89FFCP PHASE2:Hg19::chr11:18765553..18765567,-#_e09e07564b7f70eb8ca42f8df975694bp7@PTPN5
1.7e-89FFCP PHASE2:Hg19::chr1:174417095..174417131,+#_e09e07564b7f70eb8ca42f8df975694bp1@GPR52
1.7e-89FFCP PHASE1:Hg19::chr1:174417095..174417131,+#_e09e07564b7f70eb8ca42f8df975694bp1@GPR52
1.7e-89FFCP PHASE1:Hg19::chr11:18765553..18765567,-#_e09e07564b7f70eb8ca42f8df975694bp7@PTPN5
2.51e-89FFCP PHASE1:Hg19::chr1:101003675..101003682,+#_57e5b15b54f08b5b3293155793e6fbe4p5@GPR88
2.51e-89FFCP PHASE2:Hg19::chr1:101003675..101003682,+#_57e5b15b54f08b5b3293155793e6fbe4p5@GPR88
2.86e-89FFCP PHASE1:Hg19::chr11:67174819..67174825,-#_f8585fec163d767f7fcbba8264df984fp14@PPP1CA
2.86e-89FFCP PHASE2:Hg19::chr11:67174819..67174825,-#_f8585fec163d767f7fcbba8264df984fp14@PPP1CA
4.81e-88FFCP PHASE2:Hg19::chr11:18765881..18765897,-#_bdc200995b0c0da9b83552dd8e1380c3p3@PTPN5
4.81e-88FFCP PHASE1:Hg19::chr11:18765881..18765897,-#_bdc200995b0c0da9b83552dd8e1380c3p3@PTPN5
1.33e-87FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_ce0855f619f3fd4d36b127435d9f12a7+, p@chr17:19390234..19390251
1.33e-87FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_ce0855f619f3fd4d36b127435d9f12a7p@chr17:19390234..19390251, +
1.37e-87FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_200b5a0310c3309103abd9bd3fb87958p@chr14:78638610..78638621, +
1.37e-87FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_200b5a0310c3309103abd9bd3fb87958p@chr18:47967428..47967437, -
1.37e-87FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_200b5a0310c3309103abd9bd3fb87958p@chr13:112726433..112726446, +
1.37e-87FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_200b5a0310c3309103abd9bd3fb87958-, p@chr8:19799565..19799589
1.37e-87FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_200b5a0310c3309103abd9bd3fb87958p1@GNRH1
1.37e-87FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_200b5a0310c3309103abd9bd3fb87958p@chr15:35546154..35546174, -
1.37e-87FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_200b5a0310c3309103abd9bd3fb87958p@chr13:112726433..112726446, +
1.37e-87FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_200b5a0310c3309103abd9bd3fb87958p@chr14:78638610..78638621, +
1.37e-87FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_200b5a0310c3309103abd9bd3fb87958p@chr15:35546154..35546174, -
1.37e-87FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_200b5a0310c3309103abd9bd3fb87958p@chr18:47967428..47967437, -
1.37e-87FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_200b5a0310c3309103abd9bd3fb87958p@chr1:31352916..31352926, -
1.37e-87FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_200b5a0310c3309103abd9bd3fb87958p@chr2:152828264..152828299, -
1.37e-87FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_200b5a0310c3309103abd9bd3fb87958p@chr12:6031299..6031315, -
1.37e-87FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_200b5a0310c3309103abd9bd3fb87958p@chr7:22382758..22382765, -
1.37e-87FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_200b5a0310c3309103abd9bd3fb87958p20@WIPF3
1.37e-87FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_200b5a0310c3309103abd9bd3fb87958p@chr12:6031299..6031315, -
1.37e-87FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_200b5a0310c3309103abd9bd3fb87958p@chr2:152828264..152828299, -
1.37e-87FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_200b5a0310c3309103abd9bd3fb87958p@chr8:19799565..19799589, -
1.37e-87FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_200b5a0310c3309103abd9bd3fb87958p1@GNRH1
1.37e-87FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_200b5a0310c3309103abd9bd3fb87958p@chr1:31352916..31352926, -
1.37e-87FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_200b5a0310c3309103abd9bd3fb87958p@chr7:22382758..22382765, -
1.37e-87FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_200b5a0310c3309103abd9bd3fb87958p20@WIPF3
1.79e-87FFCP PHASE2:Hg19::chr10:73313437..73313451,-#_c44f41648eb2fa87b6e418f7686d969fp@chr10:73313437..73313451, -
1.79e-87FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_c44f41648eb2fa87b6e418f7686d969fp5@ANO3
1.79e-87FFCP PHASE1:Hg19::chr10:73313437..73313451,-#_c44f41648eb2fa87b6e418f7686d969fp@chr10:73313437..73313451, -
1.79e-87FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_c44f41648eb2fa87b6e418f7686d969fp5@ANO3
2.08e-87FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_2fee23c448ecb1b54ed0ccc362c51387p@chr3:16851273..16851310, +
2.08e-87FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_2fee23c448ecb1b54ed0ccc362c51387p@chr3:16851273..16851310, +
2.42e-87FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_ee8617d746c69f416877b0cd53aece22p@chr7:67899920..67899958, -
2.42e-87FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_ee8617d746c69f416877b0cd53aece22p@chr7:67899920..67899958, -
2.8e-87FFCP PHASE2:Hg19::chr9:95569585..95569596,+#_d1a3835ecba172f4f30efab1122c64ccp@chr9:95569585..95569596, +
2.8e-87FFCP PHASE1:Hg19::chr9:95569585..95569596,+#_d1a3835ecba172f4f30efab1122c64ccp@chr9:95569585..95569596, +
4.39e-83FFCP PHASE2:Hg19::chr18:11751493..11751507,+#_221982d148ab154064bedc04849eea10p12@GNAL
4.39e-83FFCP PHASE1:Hg19::chr18:11751493..11751507,+#_221982d148ab154064bedc04849eea10p12@GNAL
3.09e-79FFCP PHASE1:Hg19::chr11:13461601..13461620,-#_1e633958dd1fd8a6937cbc06cb964725p5@BTBD10
3.09e-79FFCP PHASE2:Hg19::chr11:13461601..13461620,-#_1e633958dd1fd8a6937cbc06cb964725p5@BTBD10
5.29e-79FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_8a473f5433ef39e818c0a95754ff5a32p@chr6:166076645..166076657, -
5.29e-79FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_8a473f5433ef39e818c0a95754ff5a32p@chr6:166076645..166076657, -
6.06e-79FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_8be7f06153ec6da667f8d2b45b071749p6@PTPN5
6.06e-79FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_8be7f06153ec6da667f8d2b45b071749p2@ENST00000413244
6.06e-79FFCP PHASE2:Hg19::chr2:26781521..26781537,-#_8be7f06153ec6da667f8d2b45b071749p2@OTOF
6.06e-79FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_8be7f06153ec6da667f8d2b45b071749p6@PTPN5
6.06e-79FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_8be7f06153ec6da667f8d2b45b071749p2@ENST00000413244
6.06e-79FFCP PHASE1:Hg19::chr2:26781521..26781537,-#_8be7f06153ec6da667f8d2b45b071749p2@OTOF
6.93e-79FFCP PHASE1:Hg19::chr19:19640188..19640201,+#_15d7344995935eb80ba0eb576a3cc556p@chr19:19640188..19640201, +
6.93e-79FFCP PHASE2:Hg19::chr19:19640188..19640201,+#_15d7344995935eb80ba0eb576a3cc556p@chr19:19640188..19640201, +


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