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CL:0000898

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Name:naive T cell
Namespace:FANTOM
Definition:"Mature T cell not yet exposed to antigen with the phenotype CCR7-positive, CD45RA-positive, and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low." [GO_REF:0000031, GOC:add, GOC:pam, GOC:tfm, PMID:19100699]
Synonyms: "naive T lymphocyte" EXACT []
"naive T-cell" EXACT []
"naive T-lymphocyte" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0002419(mature T cell)



Children


is a:CL:0000895 (naive thymus-derived CD4-positive, alpha-beta T cell),CL:0002677 (naive regulatory T cell)
disjoint from:CL:0000813 (memory T cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
  • 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
  • 11786-124B4 (CD4+CD25-CD45RA- memory conventional T cells, donor1)
  • 11813-124E4 (CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J))
  • 11815-124E6 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J))
  • 11816-124E7 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J))
  • 11817-124E8 (CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl))
  • 11819-124F1 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl))
  • 11820-124F2 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl))

Mouse (Mus musculus)

  • 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
  • 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
  • 11786-124B4 (CD4+CD25-CD45RA- memory conventional T cells, donor1)
  • 11813-124E4 (CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J))
  • 11815-124E6 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J))
  • 11816-124E7 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J))
  • 11817-124E8 (CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl))
  • 11819-124F1 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl))
  • 11820-124F2 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl))


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000898 (naive T cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.24e-88FFCP PHASE1:Hg19::chr1:113160702..113160706,-#_0e6a555c017994ed14f9f27d9b9f697fp21@ST7L
6.24e-88FFCP PHASE2:Hg19::chr1:113160702..113160706,-#_0e6a555c017994ed14f9f27d9b9f697fp21@ST7L
1.36e-86FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_45c0a2126c7877feb5d999ce26f98663p@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_45c0a2126c7877feb5d999ce26f98663p@chrX:54476786..54476810, +
1.36e-86FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_45c0a2126c7877feb5d999ce26f98663p@chr13:30878406..30878419, +
1.36e-86FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_45c0a2126c7877feb5d999ce26f98663p@chrX:54476786..54476810, +
1.01e-74FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_9884e2aa3b61967731720194b725a5b9p@chr16:52032670..52032685, +
1.01e-74FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_9884e2aa3b61967731720194b725a5b9p@chr16:52032670..52032685, +
1.66e-74FFCP PHASE2:Hg19::chr8:1709009..1709019,-#_8677c07e684fdc4afc5a720fab195413p1@BC025336
1.66e-74FFCP PHASE1:Hg19::chr8:1709009..1709019,-#_8677c07e684fdc4afc5a720fab195413p1@BC025336
2.41e-74FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_5bc897c4c8d830c640d716873849f2aep@chr16:93777453..93777464, +
2.41e-74FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_5bc897c4c8d830c640d716873849f2aep1@ENSMUST00000103701
2.41e-74FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_5bc897c4c8d830c640d716873849f2aep1@ENSMUST00000103701
2.41e-74FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_5bc897c4c8d830c640d716873849f2aep@chr16:93777453..93777464, +
2.48e-72FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_e0fbc23f46ccd6199e51917edd62aa44p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_e0fbc23f46ccd6199e51917edd62aa44p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_e0fbc23f46ccd6199e51917edd62aa44p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_e0fbc23f46ccd6199e51917edd62aa44p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_e0fbc23f46ccd6199e51917edd62aa44p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_e0fbc23f46ccd6199e51917edd62aa44p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_e0fbc23f46ccd6199e51917edd62aa44p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_e0fbc23f46ccd6199e51917edd62aa44p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_e0fbc23f46ccd6199e51917edd62aa44p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_e0fbc23f46ccd6199e51917edd62aa44p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_e0fbc23f46ccd6199e51917edd62aa44p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_e0fbc23f46ccd6199e51917edd62aa44p@chr13:30853488..30853499, +
7.85e-67FFCP PHASE2:Hg19::chr8:1708601..1708607,+#_2d481c41ea5db668b3d3a0901775417ap@chr8:1708601..1708607, +
7.85e-67FFCP PHASE1:Hg19::chr8:1708601..1708607,+#_2d481c41ea5db668b3d3a0901775417ap@chr8:1708601..1708607, +
1.23e-66FFCP PHASE1:Hg19::chrX:153238522..153238533,-#_0693803d27b5a4e14ac753d07b7e83bep@chrX:153238522..153238533, -
1.23e-66FFCP PHASE2:Hg19::chrX:153238522..153238533,-#_0693803d27b5a4e14ac753d07b7e83bep@chrX:153238522..153238533, -
1.71e-66FFCP PHASE2:Hg19::chr11:111410267..111410269,+#_15dbfbc0ec1948d3f204290393d22a8ap@chr11:111410267..111410269, +
1.71e-66FFCP PHASE1:Hg19::chr11:111410267..111410269,+#_15dbfbc0ec1948d3f204290393d22a8ap@chr11:111410267..111410269, +
1.92e-66FFCP PHASE1:Hg19::chr3:66444556..66444563,-#_cb7bb655692e46c1f1814a28b93e1d9bp@chr3:66444556..66444563, -
1.92e-66FFCP PHASE2:Hg19::chr3:66444556..66444563,-#_cb7bb655692e46c1f1814a28b93e1d9bp@chr3:66444556..66444563, -
2.39e-66FFCP PHASE1:Hg19::chr3:73015629..73015632,+#_42563d1820aa30a9c82a335dfbbeedc6p@chr3:73015629..73015632, +
2.39e-66FFCP PHASE2:Hg19::chr3:73015629..73015632,+#_42563d1820aa30a9c82a335dfbbeedc6p@chr3:73015629..73015632, +
3.01e-66FFCP PHASE2:Hg19::chr10:6337053..6337076,+#_645827c27322427a1add7d3bf330a7dbp@chr10:6337053..6337076, +
3.01e-66FFCP PHASE1:Hg19::chr10:6337053..6337076,+#_645827c27322427a1add7d3bf330a7dbp@chr10:6337053..6337076, +
3.35e-66FFCP PHASE1:Hg19::chr10:116301431..116301440,+#_104dac11964e6565862d3770b6001925p@chr10:116301431..116301440, +
3.35e-66FFCP PHASE1:Hg19::chr12:53039683..53039695,+#_104dac11964e6565862d3770b6001925p@chr12:53039683..53039695, +
3.35e-66FFCP PHASE2:Hg19::chr10:116301431..116301440,+#_104dac11964e6565862d3770b6001925p@chr10:116301431..116301440, +
3.35e-66FFCP PHASE2:Hg19::chr12:53039683..53039695,+#_104dac11964e6565862d3770b6001925p@chr12:53039683..53039695, +
4.68e-66FFCP PHASE1:Hg19::chr6:167527627..167527634,-#_e2d64b51206373f86df1ea6da43002d8p@chr6:167527627..167527634, -
4.68e-66FFCP PHASE2:Hg19::chr6:167527627..167527634,-#_e2d64b51206373f86df1ea6da43002d8p@chr6:167527627..167527634, -
6.53e-66FFCP PHASE2:Hg19::chr12:8472866..8472868,-#_d6f8e3e64d83caea80435481f4abfb59p@chr12:8472866..8472868, -
6.53e-66FFCP PHASE1:Hg19::chr12:8472866..8472868,-#_d6f8e3e64d83caea80435481f4abfb59p@chr12:8472866..8472868, -
1.05e-65FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_6bdd723be00fda3b84690ee8bae866a6p@chr14:53242248..53242261, +
1.05e-65FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_6bdd723be00fda3b84690ee8bae866a6p@chr14:53242248..53242261, +
1.74e-65FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_02670d72da72016cabbf5861daafbbf7p4@ENSMUST00000148466, p4@uc008zmw.1
1.74e-65FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_02670d72da72016cabbf5861daafbbf7p4@ENSMUST00000148466, p4@uc008zmw.1
2.25e-65FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_fca3ff5343d0480ea74e60b6096e6f40p@chr5:123465978..123465989, -
2.25e-65FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_fca3ff5343d0480ea74e60b6096e6f40p@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_fca3ff5343d0480ea74e60b6096e6f40p10@Grap2
2.25e-65FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_fca3ff5343d0480ea74e60b6096e6f40p@chr1:140069290..140069308, +
2.25e-65FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_fca3ff5343d0480ea74e60b6096e6f40p10@Grap2
2.25e-65FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_fca3ff5343d0480ea74e60b6096e6f40+, p@chr1:140069290..140069308
2.9e-65FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_b6f83c645f3ed464bd5a52ff2e4cfdf9p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_b6f83c645f3ed464bd5a52ff2e4cfdf9p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_b6f83c645f3ed464bd5a52ff2e4cfdf9p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_b6f83c645f3ed464bd5a52ff2e4cfdf9p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_b6f83c645f3ed464bd5a52ff2e4cfdf9p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_b6f83c645f3ed464bd5a52ff2e4cfdf9p@chr6:41504409..41504422, -
3.74e-65FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_2ed236a925482c8ba8f6bc611fe4daf2p@chr4:32328217..32328228, -
3.74e-65FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_2ed236a925482c8ba8f6bc611fe4daf2p@chr4:32328217..32328228, -
6.21e-65FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_880fdaf57160532714bf01e116816c8cp@chr13:105412781..105412798, +
6.21e-65FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_880fdaf57160532714bf01e116816c8cp@chr5:123465955..123465966, -
6.21e-65FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_880fdaf57160532714bf01e116816c8cp@chr5:123465955..123465966, -
6.21e-65FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_880fdaf57160532714bf01e116816c8cp@chr13:105412781..105412798, +
6.21e-65FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_880fdaf57160532714bf01e116816c8cp@chr11:46200110..46200124, -
6.21e-65FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_880fdaf57160532714bf01e116816c8cp@chr11:46200110..46200124, -
1.0e-60FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_73ed6a76eecb8ff1e346e3368bca33dep@chr2:11097490..11097500, +
1.0e-60FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_73ed6a76eecb8ff1e346e3368bca33dep@chr2:11097490..11097500, +
1.33e-60FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_903c4cfa9568c292b2f6400bab9dc9e5p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_903c4cfa9568c292b2f6400bab9dc9e5p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_903c4cfa9568c292b2f6400bab9dc9e5p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_903c4cfa9568c292b2f6400bab9dc9e5p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_903c4cfa9568c292b2f6400bab9dc9e5p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_903c4cfa9568c292b2f6400bab9dc9e5p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_903c4cfa9568c292b2f6400bab9dc9e5p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_903c4cfa9568c292b2f6400bab9dc9e5p@chr10:128157769..128157772, -
1.77e-60FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_a1fcf65d83d447385839a18373ec4976p1@ENSMUST00000103582
1.77e-60FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_a1fcf65d83d447385839a18373ec4976p1@ENSMUST00000103582
2.34e-60FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_c12dd5dc7f0874a0c2d3f21568f13981p@chr2:73290853..73290866, +
2.34e-60FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_c12dd5dc7f0874a0c2d3f21568f13981p@chr2:73290853..73290866, +
4.1e-60FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_e0d96801021be733a0165d0a127ce642p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_e0d96801021be733a0165d0a127ce642p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_e0d96801021be733a0165d0a127ce642p8@Folr4
4.1e-60FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_e0d96801021be733a0165d0a127ce642p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_e0d96801021be733a0165d0a127ce642p8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_e0d96801021be733a0165d0a127ce642p@chr2:11181142..11181148, -
6.68e-60FFCP PHASE2:Hg19::chr13:40765017..40765053,-#_53410b305f867886d7adfec7e6441c55p@chr13:40765017..40765053, -
6.68e-60FFCP PHASE1:Hg19::chr13:40765017..40765053,-#_53410b305f867886d7adfec7e6441c55p@chr13:40765017..40765053, -
8.17e-60FFCP PHASE1:Hg19::chr1:118201616..118201641,+#_38d88d3f3906b50debc4125b89b0f296p@chr1:118201616..118201641, +
8.17e-60FFCP PHASE2:Hg19::chr1:118201616..118201641,+#_38d88d3f3906b50debc4125b89b0f296p@chr1:118201616..118201641, +
6.9e-59FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_f25b2cf476009afcc04e46b8a6917950p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_f25b2cf476009afcc04e46b8a6917950p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_f25b2cf476009afcc04e46b8a6917950p4@Cd40lg
6.9e-59FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_f25b2cf476009afcc04e46b8a6917950p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_f25b2cf476009afcc04e46b8a6917950p4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_f25b2cf476009afcc04e46b8a6917950p@chrX:54477240..54477286, +