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UBERON:0003057

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Name:chordal neural plate
Namespace:FANTOM
Definition:"The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator]
Xrefs:
links:

TAO:0007017
VHOG:0001201
XAO:0000046

ZFA:0007017
Synonyms: "posterior neural plate" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:XAO_0000046-ZFA_0007017

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0003075(neural plate)



Children

develops from:UBERON:0003076 (posterior neural tube)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003057 (chordal neural plate), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.31e-117FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_652bfd2b9d37248d039b0178a0da7d63p1@SLC6A5
2.31e-117FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_652bfd2b9d37248d039b0178a0da7d63p1@SLC6A5
5.68e-99FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_1ef39a3320d90e9ad7127418c8adc2f1p9@TRPM3
5.68e-99FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_1ef39a3320d90e9ad7127418c8adc2f1p9@TRPM3
2.92e-96FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_42482adf9a499861174a6d4d1b0ec6aap@chr10:130489605..130489614, -
2.92e-96FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_42482adf9a499861174a6d4d1b0ec6aap@chr10:130489605..130489614, -
1.43e-91FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_6a91f8af51f1c9a0e5690b9bac33c7e7p@chr2:69741832..69741847, -
1.43e-91FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_6a91f8af51f1c9a0e5690b9bac33c7e7p@chr2:69741832..69741847, -
2.4e-88FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_42be2dc86faa84033d4da29fcb4d7190p@chr2:72381655..72381673, -
2.4e-88FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_42be2dc86faa84033d4da29fcb4d7190p@chr2:72381655..72381673, -
3.88e-87FFCP PHASE1:Hg19::chr5:151304948..151304984,-#_d7e37ffc7c20cd655bc04cdf486c4002p@chr5:151304948..151304984, -
3.88e-87FFCP PHASE2:Hg19::chr5:151304948..151304984,-#_d7e37ffc7c20cd655bc04cdf486c4002p@chr5:151304948..151304984, -
4.42e-84FFCP PHASE2:Hg19::chr5:151304337..151304405,-#_24c21c67783f3b98d78fd06568658804p1@GLRA1
4.42e-84FFCP PHASE1:Hg19::chr5:151304337..151304405,-#_24c21c67783f3b98d78fd06568658804p1@GLRA1
1.7e-81FFCP PHASE1:Hg19::chrX:106692537..106692551,+#_bd339801162dd52a3cd272d79f8f081ep@chrX:106692537..106692551, +
1.7e-81FFCP PHASE2:Hg19::chrX:106692537..106692551,+#_bd339801162dd52a3cd272d79f8f081ep@chrX:106692537..106692551, +
1.74e-81FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_2f59db7decb06231a4a76d1771783a07p@chr9:8779377..8779397, -
1.74e-81FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_2f59db7decb06231a4a76d1771783a07p@chr9:8779377..8779397, -
2.77e-80FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_ff8974e12be8cc7c3bcb38c45b529377p@chr9:128998376..128998387, -
2.77e-80FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_ff8974e12be8cc7c3bcb38c45b529377p@chr9:128998376..128998387, -
3.36e-79FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_063c1aeeecef954af86444a89605200dp2@LOC100505835
3.36e-79FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_063c1aeeecef954af86444a89605200dp2@LOC100505835
1.03e-78FFCP PHASE1:Hg19::chr2:25720324..25720333,-#_b00ac2007be06e97c28c60d169400dd5p15@DTNB
1.03e-78FFCP PHASE2:Hg19::chr2:25720324..25720333,-#_b00ac2007be06e97c28c60d169400dd5p15@DTNB
2.25e-76FFCP PHASE1:Hg19::chr17:42983316..42983326,-#_e3f5893f6126ff4373813a5e7694ae7cp@chr17:42983316..42983326, -
2.25e-76FFCP PHASE2:Hg19::chr17:42983316..42983326,-#_e3f5893f6126ff4373813a5e7694ae7cp@chr17:42983316..42983326, -
1.02e-75FFCP PHASE2:Hg19::chr17:10741337..10741344,-#_d2e2868c6005563cd3a2fd617b94990fp3@PIRT
1.02e-75FFCP PHASE1:Hg19::chr17:10741337..10741344,-#_d2e2868c6005563cd3a2fd617b94990fp3@PIRT
1.18e-75FFCP PHASE1:Hg19::chr17:11143564..11143575,+#_8bb2bcc7a6819837fb26bed99f447bf6p@chr17:11143564..11143575, +
1.18e-75FFCP PHASE2:Hg19::chr17:11143564..11143575,+#_8bb2bcc7a6819837fb26bed99f447bf6p@chr17:11143564..11143575, +
6.09e-73FFCP PHASE2:Hg19::chr2:25720352..25720388,-#_6d6c0bf7116e5b3bdcb6f54024aa941fp7@DTNB
6.09e-73FFCP PHASE1:Hg19::chr2:25720352..25720388,-#_6d6c0bf7116e5b3bdcb6f54024aa941fp7@DTNB
7.63e-73FFCP PHASE1:Hg19::chr1:62417735..62417748,+#_7e0fc2ac46acff2863e01f2281c3117dp9@INADL
7.63e-73FFCP PHASE2:Hg19::chr1:62417735..62417748,+#_7e0fc2ac46acff2863e01f2281c3117dp9@INADL
4.62e-72FFCP PHASE1:Hg19::chr6:138959885..138959912,-#_98ecb79c09860e754245bcdfb20ca9e4p@chr6:138959885..138959912, -
4.62e-72FFCP PHASE2:Hg19::chr6:138959885..138959912,-#_98ecb79c09860e754245bcdfb20ca9e4p@chr6:138959885..138959912, -
8.09e-70FFCP PHASE1:Hg19::chrX:106692569..106692585,+#_d44bdb9c8df69edb2b92cbc3e8018370+, p@chrX:106692569..106692585
8.09e-70FFCP PHASE2:Hg19::chr16:290098..290109,+#_d44bdb9c8df69edb2b92cbc3e8018370p13@ITFG3
8.09e-70FFCP PHASE2:Hg19::chrX:106692569..106692585,+#_d44bdb9c8df69edb2b92cbc3e8018370p@chrX:106692569..106692585, +
8.09e-70FFCP PHASE1:Hg19::chr16:290098..290109,+#_d44bdb9c8df69edb2b92cbc3e8018370p13@ITFG3
4.02e-69FFCP PHASE1:Hg19::chr12:41136144..41136158,+#_2312beaf9d3a9d39487fb993bcf5227bp14@CNTN1
4.02e-69FFCP PHASE2:Hg19::chr12:41136144..41136158,+#_2312beaf9d3a9d39487fb993bcf5227bp14@CNTN1
1.26e-67FFCP PHASE1:Hg19::chr5:151304987..151304998,-#_ea0844a663489faa6ac38c22177df64cp@chr5:151304987..151304998, -
1.26e-67FFCP PHASE2:Hg19::chr5:151304987..151304998,-#_ea0844a663489faa6ac38c22177df64cp@chr5:151304987..151304998, -
1.41e-67FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_1bed52849e7d74f4341e3ca939399598p@chr17:42993851..42993858, -
1.41e-67FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_1bed52849e7d74f4341e3ca939399598p@chr17:42993851..42993858, -
1.41e-67FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_1bed52849e7d74f4341e3ca939399598p3@CRTAM
1.41e-67FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_1bed52849e7d74f4341e3ca939399598p3@CRTAM
1.58e-67FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_5cc356945565bb4ca8571f2d8288e2ecp1@BARHL1
1.58e-67FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_5cc356945565bb4ca8571f2d8288e2ecp1@BARHL1
1.99e-67FFCP PHASE2:Hg19::chr4:117675601..117675614,+#_c824f89275be9db0a21387178d0f3b8cp@chr4:117675601..117675614, +
1.99e-67FFCP PHASE1:Hg19::chr4:117675601..117675614,+#_c824f89275be9db0a21387178d0f3b8cp@chr4:117675601..117675614, +
1.58e-66FFCP PHASE1:Hg19::chr6:132937878..132937891,-#_e4f0001b705f0be07d91a787a5412fc2p@chr6:132937878..132937891, -
1.58e-66FFCP PHASE2:Hg19::chr6:132937878..132937891,-#_e4f0001b705f0be07d91a787a5412fc2p@chr6:132937878..132937891, -
4.89e-66FFCP PHASE2:Hg19::chr10:130489635..130489656,-#_d4b2124df94313484a6a16ab0726acfdp@chr10:130489635..130489656, -
4.89e-66FFCP PHASE1:Hg19::chr10:130489635..130489656,-#_d4b2124df94313484a6a16ab0726acfdp@chr10:130489635..130489656, -
7.04e-66FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr11:114146042..114146050, -
7.04e-66FFCP PHASE1:Hg19::chr11:31788840..31788847,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr11:31788840..31788847, -
7.04e-66FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr6:152884391..152884402, -
7.04e-66FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr4:117873850..117873861, -
7.04e-66FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr4:117873850..117873861, -
7.04e-66FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr11:114146042..114146050, -
7.04e-66FFCP PHASE2:Hg19::chr11:31788840..31788847,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr11:31788840..31788847, -
7.04e-66FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr6:152884391..152884402, -
2.03e-65FFCP PHASE2:Hg19::chr11:17172327..17172344,-#_91ab23cde3ceb515b526a3aea6dde932p@chr11:17172327..17172344, -
2.03e-65FFCP PHASE1:Hg19::chr11:17172327..17172344,-#_91ab23cde3ceb515b526a3aea6dde932p@chr11:17172327..17172344, -
2.32e-65FFCP PHASE1:Hg19::chr17:26902537..26902548,-#_b8a883eb302e88476c79e5a8b42a6d5dp3@ALDOC
2.32e-65FFCP PHASE2:Hg19::chr17:26902537..26902548,-#_b8a883eb302e88476c79e5a8b42a6d5dp3@ALDOC
3.04e-65FFCP PHASE2:Hg19::chr16:290135..290154,+#_bd445acec3454d6a483735ac6ee18a63p10@ITFG3
3.04e-65FFCP PHASE1:Hg19::chr16:290135..290154,+#_bd445acec3454d6a483735ac6ee18a63p10@ITFG3
3.8e-64FFCP PHASE1:Hg19::chr18:77014816..77014819,-#_f79aff5977fef861f42558e5118149e7p@chr18:77014816..77014819, -
3.8e-64FFCP PHASE2:Hg19::chr18:77014816..77014819,-#_f79aff5977fef861f42558e5118149e7p@chr18:77014816..77014819, -
4.17e-64FFCP PHASE1:Hg19::chr14:62010202..62010207,-#_3eb2a9dd74b4b35bfaff2d6d80a0a156p@chr14:62010202..62010207, -
4.17e-64FFCP PHASE2:Hg19::chr14:62010202..62010207,-#_3eb2a9dd74b4b35bfaff2d6d80a0a156p@chr14:62010202..62010207, -
4.32e-64FFCP PHASE2:Hg19::chr5:136070614..136070625,+#_6866b05e9da74deaf1ffb0e5dc736a1fp1@ENST00000502421
4.32e-64FFCP PHASE1:Hg19::chr5:136070614..136070625,+#_6866b05e9da74deaf1ffb0e5dc736a1fp1@ENST00000502421
5.53e-64FFCP PHASE2:Hg19::chr2:179739649..179739660,-#_53a62636f3fe1fbda15df9c2633efe83p@chr2:179739649..179739660, -
5.53e-64FFCP PHASE1:Hg19::chr1:62417689..62417701,+#_53a62636f3fe1fbda15df9c2633efe83p10@INADL
5.53e-64FFCP PHASE1:Hg19::chr2:179739649..179739660,-#_53a62636f3fe1fbda15df9c2633efe83p@chr2:179739649..179739660, -
5.53e-64FFCP PHASE2:Hg19::chr1:62417689..62417701,+#_53a62636f3fe1fbda15df9c2633efe83p10@INADL
7.09e-64FFCP PHASE1:Hg19::chr15:79356984..79356998,-#_16eb6ee85b0c07ab7aa72fd8032c372dp8@RASGRF1
7.09e-64FFCP PHASE2:Hg19::chr15:79356984..79356998,-#_16eb6ee85b0c07ab7aa72fd8032c372dp8@RASGRF1
6.57e-63FFCP PHASE1:Hg19::chr2:25720404..25720435,-#_653363687ea066244a7d35aa1cc0e87fp8@DTNB
6.57e-63FFCP PHASE2:Hg19::chr2:25720404..25720435,-#_653363687ea066244a7d35aa1cc0e87fp8@DTNB
4.25e-62FFCP PHASE1:Hg19::chr5:72570629..72570651,-#_6d1ef3b15020b7822bf0c95d98667b29p@chr5:72570629..72570651, -
4.25e-62FFCP PHASE2:Hg19::chr5:72570629..72570651,-#_6d1ef3b15020b7822bf0c95d98667b29p@chr5:72570629..72570651, -
9.47e-62FFCP PHASE2:Hg19::chr17:68101098..68101109,+#_77564d21b5966a31a6738b492941e850p6@KCNJ16
9.47e-62FFCP PHASE1:Hg19::chr17:68101098..68101109,+#_77564d21b5966a31a6738b492941e850p6@KCNJ16
9.66e-62FFCP PHASE1:Hg19::chr5:20575812..20575831,-#_872474e13bb963589a8f8b8e12d124f0p4@CDH18
9.66e-62FFCP PHASE2:Hg19::chr5:20575812..20575831,-#_872474e13bb963589a8f8b8e12d124f0p4@CDH18
1.29e-60FFCP PHASE1:Mm9::chr7:57167425..57167443,+#_32cd34303bb738a6eaf2cb10cb93f08bp@chr7:57167425..57167443, +
1.29e-60FFCP PHASE2:Mm9::chr7:57167425..57167443,+#_32cd34303bb738a6eaf2cb10cb93f08bp@chr7:57167425..57167443, +
7.99e-60FFCP PHASE2:Hg19::chr1:90885681..90885693,-#_d65aa569cdd0ee4054f8edcc13aa4afep@chr1:90885681..90885693, -
7.99e-60FFCP PHASE1:Hg19::chr1:90885681..90885693,-#_d65aa569cdd0ee4054f8edcc13aa4afep@chr1:90885681..90885693, -
9.54e-60FFCP PHASE1:Hg19::chr6:158438086..158438095,+#_366a6b9a538bc521de3d22a7ef6d06dbp8@SYNJ2
9.54e-60FFCP PHASE2:Hg19::chr12:26765770..26765792,-#_366a6b9a538bc521de3d22a7ef6d06dbp@chr12:26765770..26765792, -
9.54e-60FFCP PHASE1:Hg19::chr12:26765770..26765792,-#_366a6b9a538bc521de3d22a7ef6d06dbp@chr12:26765770..26765792, -
9.54e-60FFCP PHASE2:Hg19::chr6:158438086..158438095,+#_366a6b9a538bc521de3d22a7ef6d06dbp8@SYNJ2
1.03e-59FFCP PHASE2:Hg19::chr17:43035276..43035287,+#_6f8ca14b0cb56ece3331bfdedc1f9f04p@chr17:43035276..43035287, +
1.03e-59FFCP PHASE1:Hg19::chr17:43035276..43035287,+#_6f8ca14b0cb56ece3331bfdedc1f9f04p@chr17:43035276..43035287, +