Personal tools

UBERON:0003076

From FANTOM5_SSTAR

Jump to: navigation, search

Name:posterior neural tube
Namespace:FANTOM
Xrefs:
links:

AAO:0011082
TAO:0007037
VHOG:0001383
XAO:0000250

ZFA:0007037
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:XAO_0000250-ZFA_0007037

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0003057(chordal neural plate)
part_of:UBERON:0001049(neural tube)



Children

develops from:UBERON:0002028 (hindbrain),UBERON:0002240 (spinal cord),UBERON:0007277 (presumptive hindbrain)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003076 (posterior neural tube), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.31e-117FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_8110f66f75e413153faa9ae1a8dddd88p1@SLC6A5
2.31e-117FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_8110f66f75e413153faa9ae1a8dddd88p1@SLC6A5
5.68e-99FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_bac084261ab1e1449ec9f3a44406efd1p9@TRPM3
5.68e-99FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_bac084261ab1e1449ec9f3a44406efd1p9@TRPM3
2.92e-96FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_31ecbbdb1a08ccaeb4414bce8ac2bdc2p@chr10:130489605..130489614, -
2.92e-96FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_31ecbbdb1a08ccaeb4414bce8ac2bdc2p@chr10:130489605..130489614, -
1.43e-91FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_b113df6bb89da3dfc1f1d7dbcc76d7a1p@chr2:69741832..69741847, -
1.43e-91FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_b113df6bb89da3dfc1f1d7dbcc76d7a1p@chr2:69741832..69741847, -
2.4e-88FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_58f3a308c603152e73ed996c228ac26ap@chr2:72381655..72381673, -
2.4e-88FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_58f3a308c603152e73ed996c228ac26ap@chr2:72381655..72381673, -
3.88e-87FFCP PHASE1:Hg19::chr5:151304948..151304984,-#_dc34375206c01d26361dbcdc5ca4c79dp@chr5:151304948..151304984, -
3.88e-87FFCP PHASE2:Hg19::chr5:151304948..151304984,-#_dc34375206c01d26361dbcdc5ca4c79dp@chr5:151304948..151304984, -
4.42e-84FFCP PHASE2:Hg19::chr5:151304337..151304405,-#_54a56ac4cca9d28cfd36bf43f2f06bb9p1@GLRA1
4.42e-84FFCP PHASE1:Hg19::chr5:151304337..151304405,-#_54a56ac4cca9d28cfd36bf43f2f06bb9p1@GLRA1
1.7e-81FFCP PHASE1:Hg19::chrX:106692537..106692551,+#_a195c61946e88aaea48e28d2ed5a5b29p@chrX:106692537..106692551, +
1.7e-81FFCP PHASE2:Hg19::chrX:106692537..106692551,+#_a195c61946e88aaea48e28d2ed5a5b29p@chrX:106692537..106692551, +
1.74e-81FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_610cec12f02e485464d0a25eb43c9195p@chr9:8779377..8779397, -
1.74e-81FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_610cec12f02e485464d0a25eb43c9195p@chr9:8779377..8779397, -
2.77e-80FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_4b1a6889377eca72f58b573d53e6f529p@chr9:128998376..128998387, -
2.77e-80FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_4b1a6889377eca72f58b573d53e6f529p@chr9:128998376..128998387, -
3.36e-79FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_78fa9fe6e06afe802a76a797617d1bacp2@LOC100505835
3.36e-79FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_78fa9fe6e06afe802a76a797617d1bacp2@LOC100505835
1.03e-78FFCP PHASE1:Hg19::chr2:25720324..25720333,-#_f01d2a42f972eed28b16b94301e2c24fp15@DTNB
1.03e-78FFCP PHASE2:Hg19::chr2:25720324..25720333,-#_f01d2a42f972eed28b16b94301e2c24fp15@DTNB
2.25e-76FFCP PHASE1:Hg19::chr17:42983316..42983326,-#_10eada30848adc447e57e756097a89c5p@chr17:42983316..42983326, -
2.25e-76FFCP PHASE2:Hg19::chr17:42983316..42983326,-#_10eada30848adc447e57e756097a89c5p@chr17:42983316..42983326, -
1.02e-75FFCP PHASE2:Hg19::chr17:10741337..10741344,-#_23a63580e3cc79a662b6ca02c11be501p3@PIRT
1.02e-75FFCP PHASE1:Hg19::chr17:10741337..10741344,-#_23a63580e3cc79a662b6ca02c11be501p3@PIRT
1.18e-75FFCP PHASE1:Hg19::chr17:11143564..11143575,+#_85e97d7dab417f6bfb3942cf488a5167p@chr17:11143564..11143575, +
1.18e-75FFCP PHASE2:Hg19::chr17:11143564..11143575,+#_85e97d7dab417f6bfb3942cf488a5167p@chr17:11143564..11143575, +
6.09e-73FFCP PHASE2:Hg19::chr2:25720352..25720388,-#_34e08afd2b0bb8b74519e28d23d237cbp7@DTNB
6.09e-73FFCP PHASE1:Hg19::chr2:25720352..25720388,-#_34e08afd2b0bb8b74519e28d23d237cbp7@DTNB
7.63e-73FFCP PHASE1:Hg19::chr1:62417735..62417748,+#_e3c49fc8f04d804be83c131d6ca7d1c5p9@INADL
7.63e-73FFCP PHASE2:Hg19::chr1:62417735..62417748,+#_e3c49fc8f04d804be83c131d6ca7d1c5p9@INADL
4.62e-72FFCP PHASE1:Hg19::chr6:138959885..138959912,-#_7e340094ab88f0bac1d88992b5fbb2bbp@chr6:138959885..138959912, -
4.62e-72FFCP PHASE2:Hg19::chr6:138959885..138959912,-#_7e340094ab88f0bac1d88992b5fbb2bbp@chr6:138959885..138959912, -
8.09e-70FFCP PHASE1:Hg19::chrX:106692569..106692585,+#_10e5247eebdbec24ea84c41894504a94+, p@chrX:106692569..106692585
8.09e-70FFCP PHASE2:Hg19::chr16:290098..290109,+#_10e5247eebdbec24ea84c41894504a94p13@ITFG3
8.09e-70FFCP PHASE2:Hg19::chrX:106692569..106692585,+#_10e5247eebdbec24ea84c41894504a94p@chrX:106692569..106692585, +
8.09e-70FFCP PHASE1:Hg19::chr16:290098..290109,+#_10e5247eebdbec24ea84c41894504a94p13@ITFG3
4.02e-69FFCP PHASE1:Hg19::chr12:41136144..41136158,+#_60f659fe2e5fd3725e9d70e6ee38fb07p14@CNTN1
4.02e-69FFCP PHASE2:Hg19::chr12:41136144..41136158,+#_60f659fe2e5fd3725e9d70e6ee38fb07p14@CNTN1
1.26e-67FFCP PHASE1:Hg19::chr5:151304987..151304998,-#_b7a088ae7c313da5c7e5e48997b83c4bp@chr5:151304987..151304998, -
1.26e-67FFCP PHASE2:Hg19::chr5:151304987..151304998,-#_b7a088ae7c313da5c7e5e48997b83c4bp@chr5:151304987..151304998, -
1.41e-67FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_f3585368d96485d53ea44b094215f675p@chr17:42993851..42993858, -
1.41e-67FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_f3585368d96485d53ea44b094215f675p@chr17:42993851..42993858, -
1.41e-67FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_f3585368d96485d53ea44b094215f675p3@CRTAM
1.41e-67FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_f3585368d96485d53ea44b094215f675p3@CRTAM
1.58e-67FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_952eb783ad84ef3e6f3a448f5bd5eae0p1@BARHL1
1.58e-67FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_952eb783ad84ef3e6f3a448f5bd5eae0p1@BARHL1
1.99e-67FFCP PHASE2:Hg19::chr4:117675601..117675614,+#_b1d25eddb6f694f4868caf8419cca9edp@chr4:117675601..117675614, +
1.99e-67FFCP PHASE1:Hg19::chr4:117675601..117675614,+#_b1d25eddb6f694f4868caf8419cca9edp@chr4:117675601..117675614, +
1.58e-66FFCP PHASE1:Hg19::chr6:132937878..132937891,-#_b4c054ae75403da3555fea5694365027p@chr6:132937878..132937891, -
1.58e-66FFCP PHASE2:Hg19::chr6:132937878..132937891,-#_b4c054ae75403da3555fea5694365027p@chr6:132937878..132937891, -
4.89e-66FFCP PHASE2:Hg19::chr10:130489635..130489656,-#_a7c1e348edcc38d2e006731e89b76df0p@chr10:130489635..130489656, -
4.89e-66FFCP PHASE1:Hg19::chr10:130489635..130489656,-#_a7c1e348edcc38d2e006731e89b76df0p@chr10:130489635..130489656, -
7.04e-66FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_d13166cea4b4421c335b8896643786f1p@chr11:114146042..114146050, -
7.04e-66FFCP PHASE1:Hg19::chr11:31788840..31788847,-#_d13166cea4b4421c335b8896643786f1p@chr11:31788840..31788847, -
7.04e-66FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_d13166cea4b4421c335b8896643786f1p@chr6:152884391..152884402, -
7.04e-66FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_d13166cea4b4421c335b8896643786f1p@chr4:117873850..117873861, -
7.04e-66FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_d13166cea4b4421c335b8896643786f1p@chr4:117873850..117873861, -
7.04e-66FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_d13166cea4b4421c335b8896643786f1p@chr11:114146042..114146050, -
7.04e-66FFCP PHASE2:Hg19::chr11:31788840..31788847,-#_d13166cea4b4421c335b8896643786f1p@chr11:31788840..31788847, -
7.04e-66FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_d13166cea4b4421c335b8896643786f1p@chr6:152884391..152884402, -
2.03e-65FFCP PHASE2:Hg19::chr11:17172327..17172344,-#_eeb60e14f9faa84fcaf78cb9d1cc3c9bp@chr11:17172327..17172344, -
2.03e-65FFCP PHASE1:Hg19::chr11:17172327..17172344,-#_eeb60e14f9faa84fcaf78cb9d1cc3c9bp@chr11:17172327..17172344, -
2.32e-65FFCP PHASE1:Hg19::chr17:26902537..26902548,-#_156ce3de0bcc8e6c4be429174364f2d1p3@ALDOC
2.32e-65FFCP PHASE2:Hg19::chr17:26902537..26902548,-#_156ce3de0bcc8e6c4be429174364f2d1p3@ALDOC
3.04e-65FFCP PHASE2:Hg19::chr16:290135..290154,+#_91d242b38e68f8f51c8f384f7e8b96c2p10@ITFG3
3.04e-65FFCP PHASE1:Hg19::chr16:290135..290154,+#_91d242b38e68f8f51c8f384f7e8b96c2p10@ITFG3
3.8e-64FFCP PHASE1:Hg19::chr18:77014816..77014819,-#_90dcd6c5b3f1ee0cf79c64f8c0d7add4p@chr18:77014816..77014819, -
3.8e-64FFCP PHASE2:Hg19::chr18:77014816..77014819,-#_90dcd6c5b3f1ee0cf79c64f8c0d7add4p@chr18:77014816..77014819, -
4.17e-64FFCP PHASE1:Hg19::chr14:62010202..62010207,-#_04a123859de5a769792db0af13e2592cp@chr14:62010202..62010207, -
4.17e-64FFCP PHASE2:Hg19::chr14:62010202..62010207,-#_04a123859de5a769792db0af13e2592cp@chr14:62010202..62010207, -
4.32e-64FFCP PHASE2:Hg19::chr5:136070614..136070625,+#_89d7b7ead0bc9ba6c62a138fa39594ecp1@ENST00000502421
4.32e-64FFCP PHASE1:Hg19::chr5:136070614..136070625,+#_89d7b7ead0bc9ba6c62a138fa39594ecp1@ENST00000502421
5.53e-64FFCP PHASE2:Hg19::chr2:179739649..179739660,-#_652896de7432e054359ef749d8461c35p@chr2:179739649..179739660, -
5.53e-64FFCP PHASE1:Hg19::chr1:62417689..62417701,+#_652896de7432e054359ef749d8461c35p10@INADL
5.53e-64FFCP PHASE1:Hg19::chr2:179739649..179739660,-#_652896de7432e054359ef749d8461c35p@chr2:179739649..179739660, -
5.53e-64FFCP PHASE2:Hg19::chr1:62417689..62417701,+#_652896de7432e054359ef749d8461c35p10@INADL
7.09e-64FFCP PHASE1:Hg19::chr15:79356984..79356998,-#_a22eb32513b699d14285872095511184p8@RASGRF1
7.09e-64FFCP PHASE2:Hg19::chr15:79356984..79356998,-#_a22eb32513b699d14285872095511184p8@RASGRF1
6.57e-63FFCP PHASE1:Hg19::chr2:25720404..25720435,-#_bd143f804a23665958753b0e4727deffp8@DTNB
6.57e-63FFCP PHASE2:Hg19::chr2:25720404..25720435,-#_bd143f804a23665958753b0e4727deffp8@DTNB
4.25e-62FFCP PHASE1:Hg19::chr5:72570629..72570651,-#_4b1b9b49b0eb1e34f20b218a3b8d37c6p@chr5:72570629..72570651, -
4.25e-62FFCP PHASE2:Hg19::chr5:72570629..72570651,-#_4b1b9b49b0eb1e34f20b218a3b8d37c6p@chr5:72570629..72570651, -
9.47e-62FFCP PHASE2:Hg19::chr17:68101098..68101109,+#_7d2f273edd874c0e0c920fd08909b8d0p6@KCNJ16
9.47e-62FFCP PHASE1:Hg19::chr17:68101098..68101109,+#_7d2f273edd874c0e0c920fd08909b8d0p6@KCNJ16
9.66e-62FFCP PHASE1:Hg19::chr5:20575812..20575831,-#_cf11ca39cde5af5eab2813c8f41bc22fp4@CDH18
9.66e-62FFCP PHASE2:Hg19::chr5:20575812..20575831,-#_cf11ca39cde5af5eab2813c8f41bc22fp4@CDH18
1.29e-60FFCP PHASE1:Mm9::chr7:57167425..57167443,+#_a71cd6314987cae49c0987eb96ba3412p@chr7:57167425..57167443, +
1.29e-60FFCP PHASE2:Mm9::chr7:57167425..57167443,+#_a71cd6314987cae49c0987eb96ba3412p@chr7:57167425..57167443, +
7.99e-60FFCP PHASE2:Hg19::chr1:90885681..90885693,-#_467b1ce60b90189098505d07bdfeadd4p@chr1:90885681..90885693, -
7.99e-60FFCP PHASE1:Hg19::chr1:90885681..90885693,-#_467b1ce60b90189098505d07bdfeadd4p@chr1:90885681..90885693, -
9.54e-60FFCP PHASE1:Hg19::chr6:158438086..158438095,+#_780de74a6611e5ead709903a33f3312ep8@SYNJ2
9.54e-60FFCP PHASE2:Hg19::chr12:26765770..26765792,-#_780de74a6611e5ead709903a33f3312ep@chr12:26765770..26765792, -
9.54e-60FFCP PHASE1:Hg19::chr12:26765770..26765792,-#_780de74a6611e5ead709903a33f3312ep@chr12:26765770..26765792, -
9.54e-60FFCP PHASE2:Hg19::chr6:158438086..158438095,+#_780de74a6611e5ead709903a33f3312ep8@SYNJ2
1.03e-59FFCP PHASE2:Hg19::chr17:43035276..43035287,+#_5c816b8a12f01a9b4f1ef62f5491726dp@chr17:43035276..43035287, +
1.03e-59FFCP PHASE1:Hg19::chr17:43035276..43035287,+#_5c816b8a12f01a9b4f1ef62f5491726dp@chr17:43035276..43035287, +