UBERON:0005721: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005721
|name=pronephric mesoderm
|namespace=
|def=
|xref=AAO:0011090;;EFO:0003479;;TAO:0000067;;VHOG:0001239;;XAO:0000264;;ZFA:0000067
|is_a=UBERON:...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:23, 15 June 2012
| Name: | pronephric mesoderm | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"pronephric anlage" RELATED [XAO:0000264] "pronephric bulge" RELATED [XAO:0000264] "pronephric mesenchyme" RELATED [XAO:0000264] "pronephric primordium" RELATED [XAO:0000264] | ||
| Comments: | the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0007297(presumptive pronephric mesoderm) |
| part_of: | UBERON:0003064(intermediate mesoderm) |
Children
| develops from: | UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:56469136..56469145,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:56469136..56469145, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164439019..164439029,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p1@Wfdc6b |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:16663110..16663116,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Ntsr2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:83143938..83143953,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:83143938..83143953, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:134913640..134913649,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:134913640..134913649, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:124447371..124447383,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:124447371..124447383, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:134913640..134913649,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:134913640..134913649, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51670340..51670346,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:51670340..51670346, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:89597834..89597840,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:89597834..89597840, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35651807..35651818,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@9230110F15Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr6:54359310..54359337,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr6:54359310..54359337, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:148676901..148676906,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p8@9230104L09Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:34107586..34107593,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:34107586..34107593, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:156776465..156776473,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:156776465..156776473, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:103896072..103896081,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr12:103896072..103896081, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:11079838..11079844,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:11079838..11079844, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:110131610..110131621,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p11@Wars |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:87922778..87922788,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:87922778..87922788, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:155722142..155722175,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:155722142..155722175, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:25565920..25565950,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:25565920..25565950, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:148676901..148676906,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p8@9230104L09Rik |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:63779573..63779582,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:63779573..63779582, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:20419453..20419476,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:20419453..20419476, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:112721323..112721328,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:112721323..112721328, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr17:14306714..14306740,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr17:14306714..14306740, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr17:73221062..73221084,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr17:73221062..73221084, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101958876..101958883,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101958876..101958883, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr17:35252614..35252635,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Ly6g5b |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:25349414..25349424,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p5@Lcn12 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:103896072..103896081,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr12:103896072..103896081, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr19:17585885..17585901,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr19:17585885..17585901, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:46041606..46041640,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:46041606..46041640, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379550..31379559,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379550..31379559, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:109379335..109379338,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p21@Pgap2 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379430..21379437,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379430..21379437, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:23057222..23057234,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p1@Defb13 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr3:107731917..107731926,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr3:107731917..107731926, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:63630486..63630493,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p5@Defb43 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379878..31379883,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379878..31379883, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr18:46301295..46301302,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr18:46301295..46301302, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:164787162..164787188,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:164787162..164787188, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:110132148..110132154,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Wdr25 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:74440187..74440209,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:74440187..74440209, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr10:56515486..56515496,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:56515486..56515496, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21383212..21383225,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21383212..21383225, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr17:73221016..73221031,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr17:73221016..73221031, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:110773718..110773729,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:110773718..110773729, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:52542831..52542836,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Rnase13 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr3:103650758..103650778,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr3:103650758..103650778, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152302739..152302742,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p5@Defb20 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:116901482..116901494,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@ENSMUST00000152401 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:35651764..35651782,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@9230110F15Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31377177..31377184,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31377177..31377184, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:63611201..63611210,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:63611201..63611210, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21381141..21381155,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21381141..21381155, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:25706074..25706082,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Ido1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:100634942..100634968,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:100634942..100634968, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:91107095..91107103,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:91107095..91107103, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr10:127470322..127470326,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:127470322..127470326, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr18:62816857..62816866,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p7@Spink10 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:113585714..113585722,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:113585714..113585722, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:50280199..50280211,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:50280199..50280211, + |
